FFCP PHASE1:Mm9::chr2:157385838..157385855,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr2:157385838..157385855,+ to FFCP PHASE1:Mm9::chr2:157385838..157385855,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=18111 | |EntrezGene=18111 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=470 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q2N6,Q61979,G3UWR7,G3UWR4,Q548P9 | |UniProt=E9Q2N6,Q61979,G3UWR7,G3UWR4,Q548P9 | ||
|association_with_transcript=0bp_to_ENSMUST00000088485,ENSMUST00000109526,ENSMUST00000173595,ENSMUST00000173839,NM_010923,NM_180960,uc008npe.1,uc008npf.1_5end | |||
|cluster_id=chr2:157385838..157385855,+ | |||
|description=CAGE_peak_1_at_Nnat_5end | |||
|id=chr2:157385838..157385855,+ | |||
|ontology_enrichment_celltype=CL:0000540!7.65e-15!33;CL:0000047!7.65e-15!33;CL:0000031!7.65e-15!33;CL:0000404!7.65e-15!33;CL:0000117!1.25e-14!23;CL:0000337!1.25e-14!23;CL:0002319!1.94e-13!43;CL:0000221!2.05e-13!44;CL:0000133!2.05e-13!44;CL:0000393!1.15e-10!39;CL:0000211!1.15e-10!39;CL:0000055!1.42e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.97e-15,33;CL:0000047,5.97e-15,33;CL:0000031,5.97e-15,33;CL:0000404,5.97e-15,33;CL:0000117,9.81e-15,23;CL:0000337,9.81e-15,23;CL:0002319,1.55e-13,43;CL:0000221,1.64e-13,44;CL:0000133,1.64e-13,44;CL:0000393,1.67e-10,39;CL:0000211,1.67e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.63e-25!102;UBERON:0000924!1.63e-25!102;UBERON:0006601!1.63e-25!102;UBERON:0001017!1.43e-23!73;UBERON:0005743!1.43e-23!73;UBERON:0000073!6.69e-23!75;UBERON:0001016!6.69e-23!75;UBERON:0002346!7.42e-22!71;UBERON:0003075!7.42e-22!71;UBERON:0007284!7.42e-22!71;UBERON:0000033!4.69e-18!63;UBERON:0001049!9.66e-18!52;UBERON:0005068!9.66e-18!52;UBERON:0006241!9.66e-18!52;UBERON:0007135!9.66e-18!52;UBERON:0003056!9.08e-17!49;UBERON:0000955!2.07e-16!50;UBERON:0006238!2.07e-16!50;UBERON:0002616!3.10e-16!49;UBERON:0003080!2.71e-14!40;UBERON:0002780!6.21e-14!39;UBERON:0001890!6.21e-14!39;UBERON:0006240!6.21e-14!39;UBERON:0002020!5.91e-11!34;UBERON:0000468!8.59e-11!333;UBERON:0000922!1.33e-08!328;UBERON:0002791!2.55e-08!29;UBERON:0003528!2.55e-08!29;UBERON:0001893!2.55e-08!29;UBERON:0000153!8.63e-08!94;UBERON:0001894!2.53e-07!10;UBERON:0006222!2.53e-07!10;UBERON:0007811!6.93e-07!86;UBERON:0000007!8.32e-07!8;UBERON:0003296!8.32e-07!8;UBERON:0010133!8.32e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.63e-24,95;UBERON:0000924,1.63e-24,95;UBERON:0006601,1.63e-24,95;UBERON:0001017,9.47e-24,73;UBERON:0001016,4.48e-23,75;UBERON:0002346,3.24e-21,64;UBERON:0003075,3.24e-21,64;UBERON:0007284,3.24e-21,64;UBERON:0010371,2.47e-20,73;UBERON:0000073,2.35e-19,54;UBERON:0001049,7.13e-18,52;UBERON:0005068,7.13e-18,52;UBERON:0006241,7.13e-18,52;UBERON:0007135,7.13e-18,52;UBERON:0003056,6.83e-17,49;UBERON:0010314,2.88e-15,92;UBERON:0000955,4.14e-15,47;UBERON:0006238,4.14e-15,47;UBERON:0002616,6.19e-15,46;UBERON:0003080,2.14e-14,40;UBERON:0002780,4.93e-14,39;UBERON:0001890,4.93e-14,39;UBERON:0006240,4.93e-14,39;UBERON:0002020,4.96e-11,34;UBERON:0003528,2.25e-08,29;UBERON:0002791,2.25e-08,29;UBERON:0001893,2.25e-08,29;UBERON:0000922,9.15e-08,320;UBERON:0001894,2.27e-07,10;UBERON:0006222,2.27e-07,10;UBERON:0000479,3.68e-07,349;UBERON:0000007,7.53e-07,8;UBERON:0003296,7.53e-07,8;UBERON:0010133,7.53e-07,8 | |||
|phase1_expression=184.491471864723,0.697950815278722,3.18499467572675,0,0,1.51091344720701,0.934450562382103,0,0.281577444303333,0.70219357896598,0,0,0,0,0,0,0,0,0,0,54.2576191163825,0,0,0.159992422793407,1.14704640533585,0.57423196411502,0.86152399231815,0.861884930743556,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.506884656097573,1.65192076945513,369.288714532274,128.852867420844,2.41654801007919,1.1665793944457,25.0575694709399,109.251948917378,0,0,0,2.82985379639542,3.43840127926508,12.8918023069361,5153.00025809396,8474.43548793797,5428.76597103042,43.3721001048489,38.239676232779,0.899899717281399,9.88866362566974,0.7104801149461,291.211307423889,1241.40934449394,1365.79957332727,2203.02690169653,1309.27288441235,1193.44981283909,1298.26528371358,2123.86796758809,2889.74095119983,2433.17212815673,452.576270907488,369.654843756618,424.414851387001,6198.25986445592,7742.05035221031,5569.60575799288,738.997398356655,968.514451864521,1169.97618322704,1529.12235860834,1308.82286158615,1913.20391195089,20.143167426627,10.202160614416,0.869593466105033,0.860423876981386,1.3599426674155,2.69851595818909,0,0,25.9822177243741,0,0,0,95.4918386085894,0,0,0,0.432982082022428,0,0,19.7538111913974,7.76813650941515,53.7360543414666,227.439263390404,266.711759001436,134.218219403026,160.821057469648,159.685464290287,63.7129618041455,242.251068379686,60.2979318356032,8.84610551949874,7.60304194752823,6.8460870722722,8.24287930329878,1.86391761218122,65.290117733575,49.4294228079754,1.78819938646014,0.11981512450592,0,0,330.737731805849,227.377799600857,1368.12458580487,158.006307054779,96.1490119562043,412.874844539846,234.925348922113,34.7272230729579,17.416975885413,6.82351447770922,17.8875577503503,407.016745587337,470.149803566452,668.390625837456,333.359057052602,297.523610788757,351.928389622482,371.433636154765,43.7208696548936,949.361440876237,700.63802702177,370.377116365112,154.53299136144,91.1994977459961,25.7706603226403,19.3435208223467,97.1287222074247,0,0,0,110.398036761423,67.3089792145746,42.4946465047995,55.161523391354,14.1670246858131,16.0437797402873,7.67362017676346,8.31647544338819,4.55384835231961,4.44311594766397,2.79084688934462,0.648550476366846,1.46199987425332,2.19550115291051,0.536825675041487,328.052319760039,841.039396975892,2.64335026387038,0.793351699990633,362.803314160433,277.522822873224,185.698011765136,99.8333446885545,83.8365225295161,47.7466321542523,4.74529061544512,38.0454585412465,19.604146286421,20.2935601481974,13.4525220112193,8.98819408654222,3.24207074812041,1.7922714592893,182.650188617818,77.5747400620059,81.1495696846179,42.3594761918254,33.9416852543345,14.5181147172959,9.35900749439008,1.32849133181642,1.255989822731,0.370191491765402,0,44.7144883319132,23.5870794135844,17.7641068784034,8.72298521970563,9.88826354984909,12.731292589071,10.9324532231308,3.72911021582581,1.09824565275233,7.18841032636773,4.83783231969054,3.12037673114561,0.757736633841335,0.358794827043824,0,7.57488079683079,239.138161654352,234.832531052959,143.94383273736,161.701581070778,217.255615902035,129.019653360219,22.0501022079313,45.398921502583,46.9505142055403,27.9045845150602,8.35702905050264,10.1884139300878,8.24499633914616,0,0,29.0140921081231,164.734237543925,210.963475243959,167.964346886627,0,3.7870639080656,168.165880948865,194.438494659726,223.394063448912,120.679242966039,147.492722242545,125.119826608664,119.823967695769,163.078768714512,137.164858947444,175.762760082728,60.3245362135142,64.6378141312136,42.0248355132226,8.08353602565424,6.63725691699814,144.211697876059,116.092245874464,168.424336222017,371.785083136893,212.437687229254,124.045580720746,29.0826983582004,33.5107535681638,13.5895805912401,2.10837217149998,6.18813259489121,6601.4643951717,2667.06492479177,5677.55263122509,5635.77799912069,14080.2825304956,10670.0226689559,5922.11925147033,8664.76798685238,17.6003781047783,19.0648863777438,11.688005096913,165.545797953246,3.06782410722221,31.4230338875692,35.3342138249284,22.9797259643086,4.66369338607761,105.32157154197,0.170870880797853,172.745808485217,176.675579110705,4.33247451110789,0.410082683163076,0,0.169978429993855,0.139951452323658,0,16.2294005062569,344.648065006647,162.045615300098,81.004005616351,72.9718153090496,59.3946173389603,39.6501178371373,24.7960367176008,3.40282724579238,2.72191443912765,3.72803587852155,1.69107881605257,110.044177888368,67.83798108741,42.5848102473464,47.6599748632828,24.4986381961628,30.2781675706045,12.6298253298632,6.18670132111694,2.17425708743405,2.59227005632079,2.8441000856536,40.747768273323,13.9686901744165,2.07873316764472,6.44496104402933,4.56967115996909,3.72605893511903,3.98761723371358,2.22126189885925,2.13379058634,1.00826185136841,0.38983152295901,0,0.233753804363138,2.26730383615211,0,0.0897138566094757,0.503653849092235,40.7630043407922,3.75364950902364,3.47988086107804,3.00115730710692,17.0534515372024,105.043842726774,126.589440039474,128.901490523864,100.018552124026,84.265149931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| |phase1_expression=184.491471864723,0.697950815278722,3.18499467572675,0,0,1.51091344720701,0.934450562382103,0,0.281577444303333,0.70219357896598,0,0,0,0,0,0,0,0,0,0,54.2576191163825,0,0,0.159992422793407,1.14704640533585,0.57423196411502,0.86152399231815,0.861884930743556,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.506884656097573,1.65192076945513,369.288714532274,128.852867420844,2.41654801007919,1.1665793944457,25.0575694709399,109.251948917378,0,0,0,2.82985379639542,3.43840127926508,12.8918023069361,5153.00025809396,8474.43548793797,5428.76597103042,43.3721001048489,38.239676232779,0.899899717281399,9.88866362566974,0.7104801149461,291.211307423889,1241.40934449394,1365.79957332727,2203.02690169653,1309.27288441235,1193.44981283909,1298.26528371358,2123.86796758809,2889.74095119983,2433.17212815673,452.576270907488,369.654843756618,424.414851387001,6198.25986445592,7742.05035221031,5569.60575799288,738.997398356655,968.514451864521,1169.97618322704,1529.12235860834,1308.82286158615,1913.20391195089,20.143167426627,10.202160614416,0.869593466105033,0.860423876981386,1.3599426674155,2.69851595818909,0,0,25.9822177243741,0,0,0,95.4918386085894,0,0,0,0.432982082022428,0,0,19.7538111913974,7.76813650941515,53.7360543414666,227.439263390404,266.711759001436,134.218219403026,160.821057469648,159.685464290287,63.7129618041455,242.251068379686,60.2979318356032,8.84610551949874,7.60304194752823,6.8460870722722,8.24287930329878,1.86391761218122,65.290117733575,49.4294228079754,1.78819938646014,0.11981512450592,0,0,330.737731805849,227.377799600857,1368.12458580487,158.006307054779,96.1490119562043,412.874844539846,234.925348922113,34.7272230729579,17.416975885413,6.82351447770922,17.8875577503503,407.016745587337,470.149803566452,668.390625837456,333.359057052602,297.523610788757,351.928389622482,371.433636154765,43.7208696548936,949.361440876237,700.63802702177,370.377116365112,154.53299136144,91.1994977459961,25.7706603226403,19.3435208223467,97.1287222074247,0,0,0,110.398036761423,67.3089792145746,42.4946465047995,55.161523391354,14.1670246858131,16.0437797402873,7.67362017676346,8.31647544338819,4.55384835231961,4.44311594766397,2.79084688934462,0.648550476366846,1.46199987425332,2.19550115291051,0.536825675041487,328.052319760039,841.039396975892,2.64335026387038,0.793351699990633,362.803314160433,277.522822873224,185.698011765136,99.8333446885545,83.8365225295161,47.7466321542523,4.74529061544512,38.0454585412465,19.604146286421,20.2935601481974,13.4525220112193,8.98819408654222,3.24207074812041,1.7922714592893,182.650188617818,77.5747400620059,81.1495696846179,42.3594761918254,33.9416852543345,14.5181147172959,9.35900749439008,1.32849133181642,1.255989822731,0.370191491765402,0,44.7144883319132,23.5870794135844,17.7641068784034,8.72298521970563,9.88826354984909,12.731292589071,10.9324532231308,3.72911021582581,1.09824565275233,7.18841032636773,4.83783231969054,3.12037673114561,0.757736633841335,0.358794827043824,0,7.57488079683079,239.138161654352,234.832531052959,143.94383273736,161.701581070778,217.255615902035,129.019653360219,22.0501022079313,45.398921502583,46.9505142055403,27.9045845150602,8.35702905050264,10.1884139300878,8.24499633914616,0,0,29.0140921081231,164.734237543925,210.963475243959,167.964346886627,0,3.7870639080656,168.165880948865,194.438494659726,223.394063448912,120.679242966039,147.492722242545,125.119826608664,119.823967695769,163.078768714512,137.164858947444,175.762760082728,60.3245362135142,64.6378141312136,42.0248355132226,8.08353602565424,6.63725691699814,144.211697876059,116.092245874464,168.424336222017,371.785083136893,212.437687229254,124.045580720746,29.0826983582004,33.5107535681638,13.5895805912401,2.10837217149998,6.18813259489121,6601.4643951717,2667.06492479177,5677.55263122509,5635.77799912069,14080.2825304956,10670.0226689559,5922.11925147033,8664.76798685238,17.6003781047783,19.0648863777438,11.688005096913,165.545797953246,3.06782410722221,31.4230338875692,35.3342138249284,22.9797259643086,4.66369338607761,105.32157154197,0.170870880797853,172.745808485217,176.675579110705,4.33247451110789,0.410082683163076,0,0.169978429993855,0.139951452323658,0,16.2294005062569,344.648065006647,162.045615300098,81.004005616351,72.9718153090496,59.3946173389603,39.6501178371373,24.7960367176008,3.40282724579238,2.72191443912765,3.72803587852155,1.69107881605257,110.044177888368,67.83798108741,42.5848102473464,47.6599748632828,24.4986381961628,30.2781675706045,12.6298253298632,6.18670132111694,2.17425708743405,2.59227005632079,2.8441000856536,40.747768273323,13.9686901744165,2.07873316764472,6.44496104402933,4.56967115996909,3.72605893511903,3.98761723371358,2.22126189885925,2.13379058634,1.00826185136841,0.38983152295901,0,0.233753804363138,2.26730383615211,0,0.0897138566094757,0.503653849092235,40.7630043407922,3.75364950902364,3.47988086107804,3.00115730710692,17.0534515372024,105.043842726774,126.589440039474,128.901490523864,100.018552124026,84.265149931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| ||
|short_description=p1@Nnat | |||
}} | }} |
Latest revision as of 00:48, 26 September 2015
Short description: | p1@Nnat |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nnat_5end |
Coexpression cluster: | MCL_coexpression_mm9:470 |
Association with transcript: | 0bp_to_ENSMUST00000088485, ENSMUST00000109526, ENSMUST00000173595, ENSMUST00000173839, NM_010923, NM_180960, uc008npe.1, uc008npf.1_5end |
EntrezGene: | Nnat |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.97e-15 | 33 |
neuronal stem cell | 5.97e-15 | 33 |
neuroblast | 5.97e-15 | 33 |
electrically signaling cell | 5.97e-15 | 33 |
CNS neuron (sensu Vertebrata) | 9.81e-15 | 23 |
neuroblast (sensu Vertebrata) | 9.81e-15 | 23 |
neural cell | 1.55e-13 | 43 |
ectodermal cell | 1.64e-13 | 44 |
neurectodermal cell | 1.64e-13 | 44 |
electrically responsive cell | 1.67e-10 | 39 |
electrically active cell | 1.67e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.63e-24 | 95 |
ectoderm | 1.63e-24 | 95 |
presumptive ectoderm | 1.63e-24 | 95 |
central nervous system | 9.47e-24 | 73 |
nervous system | 4.48e-23 | 75 |
neurectoderm | 3.24e-21 | 64 |
neural plate | 3.24e-21 | 64 |
presumptive neural plate | 3.24e-21 | 64 |
ecto-epithelium | 2.47e-20 | 73 |
regional part of nervous system | 2.35e-19 | 54 |
neural tube | 7.13e-18 | 52 |
neural rod | 7.13e-18 | 52 |
future spinal cord | 7.13e-18 | 52 |
neural keel | 7.13e-18 | 52 |
pre-chordal neural plate | 6.83e-17 | 49 |
structure with developmental contribution from neural crest | 2.88e-15 | 92 |
brain | 4.14e-15 | 47 |
future brain | 4.14e-15 | 47 |
regional part of brain | 6.19e-15 | 46 |
anterior neural tube | 2.14e-14 | 40 |
regional part of forebrain | 4.93e-14 | 39 |
forebrain | 4.93e-14 | 39 |
future forebrain | 4.93e-14 | 39 |
gray matter | 4.96e-11 | 34 |
brain grey matter | 2.25e-08 | 29 |
regional part of telencephalon | 2.25e-08 | 29 |
telencephalon | 2.25e-08 | 29 |
embryo | 9.15e-08 | 320 |
diencephalon | 2.27e-07 | 10 |
future diencephalon | 2.27e-07 | 10 |
tissue | 3.68e-07 | 349 |
pituitary gland | 7.53e-07 | 8 |
gland of diencephalon | 7.53e-07 | 8 |
neuroendocrine gland | 7.53e-07 | 8 |