FFCP PHASE1:Mm9::chr5:104182963..104182982,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr5:104182963..104182982,+ to FFCP PHASE1:Mm9::chr5:104182963..104182982,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=17355 | |EntrezGene=17355 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=4 | |||
|TSSclassifier=NA | |||
|UniProt=A3KMF4,Q3UP77,Q3UQD9 | |UniProt=A3KMF4,Q3UP77,Q3UQD9 | ||
|association_with_transcript=-198bp_to_ENSMUST00000054979,NM_133919,uc008yjt.1_5end | |||
|cluster_id=chr5:104182963..104182982,+ | |||
|description=CAGE_peak_5_at_Aff1_5end | |||
|id=chr5:104182963..104182982,+ | |||
|ontology_enrichment_celltype=CL:0000791!7.70e-07!9;CL:0000789!7.70e-07!9;CL:0002420!7.70e-07!9;CL:0002419!7.70e-07!9;CL:0000790!7.70e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.74e-07,9;CL:0000789,1.74e-07,9;CL:0002420,1.74e-07,9;CL:0002419,1.74e-07,9;CL:0000790,1.74e-07,9;CL:0000624,8.47e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.13e-12!29;UBERON:0002370!2.03e-10!23;UBERON:0000974!2.03e-10!23;UBERON:0004807!2.03e-10!23;UBERON:0005058!2.03e-10!23;UBERON:0003351!2.03e-10!23;UBERON:0009113!2.03e-10!23;UBERON:0003295!2.03e-10!23;UBERON:0009722!2.03e-10!23;UBERON:0005562!2.03e-10!23;UBERON:0007690!2.03e-10!23;UBERON:0006562!2.39e-10!24;UBERON:0001557!2.39e-10!24;UBERON:0001042!2.39e-10!24;UBERON:0008814!2.39e-10!24;UBERON:0009145!2.39e-10!24;UBERON:0003408!3.03e-10!24;UBERON:0002390!3.11e-10!45;UBERON:0003061!3.11e-10!45;UBERON:0002193!8.65e-10!48;UBERON:0003081!1.63e-08!88;UBERON:0000072!1.37e-07!27;UBERON:0005057!2.64e-07!51;UBERON:0002405!9.48e-07!70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,6.36e-15,29;UBERON:0005057,6.36e-15,29;UBERON:0007811,2.57e-13,36;UBERON:0000153,5.36e-13,43;UBERON:0002370,2.13e-12,23;UBERON:0000974,2.13e-12,23;UBERON:0004807,2.13e-12,23;UBERON:0005058,2.13e-12,23;UBERON:0003351,2.13e-12,23;UBERON:0009113,2.13e-12,23;UBERON:0003295,2.13e-12,23;UBERON:0009722,2.13e-12,23;UBERON:0005562,2.13e-12,23;UBERON:0007690,2.13e-12,23;UBERON:0006562,2.70e-12,24;UBERON:0001557,2.70e-12,24;UBERON:0001042,2.70e-12,24;UBERON:0008814,2.70e-12,24;UBERON:0009145,2.70e-12,24;UBERON:0003408,3.57e-12,24;UBERON:0002390,3.59e-12,45;UBERON:0003061,3.59e-12,45;UBERON:0002193,6.00e-12,48;UBERON:0002405,6.00e-12,48;UBERON:0000077,8.77e-12,35;UBERON:0003081,8.87e-10,87;UBERON:0000072,1.28e-09,27;UBERON:0001048,1.44e-07,134 | |||
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| ||
|short_description=p5@Aff1 | |||
}} | }} |
Latest revision as of 12:36, 1 October 2015
Short description: | p5@Aff1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Aff1_5end |
Coexpression cluster: | MCL_coexpression_mm9:4 |
Association with transcript: | -198bp_to_ENSMUST00000054979, NM_133919, uc008yjt.1_5end |
EntrezGene: | Aff1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.74e-07 | 9 |
alpha-beta T cell | 1.74e-07 | 9 |
immature T cell | 1.74e-07 | 9 |
mature T cell | 1.74e-07 | 9 |
immature alpha-beta T cell | 1.74e-07 | 9 |
CD4-positive, alpha-beta T cell | 8.47e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 6.36e-15 | 29 |
immune organ | 6.36e-15 | 29 |
craniocervical region | 2.57e-13 | 36 |
anterior region of body | 5.36e-13 | 43 |
thymus | 2.13e-12 | 23 |
neck | 2.13e-12 | 23 |
respiratory system epithelium | 2.13e-12 | 23 |
hemolymphoid system gland | 2.13e-12 | 23 |
pharyngeal epithelium | 2.13e-12 | 23 |
thymic region | 2.13e-12 | 23 |
pharyngeal gland | 2.13e-12 | 23 |
entire pharyngeal arch endoderm | 2.13e-12 | 23 |
thymus primordium | 2.13e-12 | 23 |
early pharyngeal endoderm | 2.13e-12 | 23 |
pharynx | 2.70e-12 | 24 |
upper respiratory tract | 2.70e-12 | 24 |
chordate pharynx | 2.70e-12 | 24 |
pharyngeal arch system | 2.70e-12 | 24 |
pharyngeal region of foregut | 2.70e-12 | 24 |
gland of gut | 3.57e-12 | 24 |
hematopoietic system | 3.59e-12 | 45 |
blood island | 3.59e-12 | 45 |
hemolymphoid system | 6.00e-12 | 48 |
immune system | 6.00e-12 | 48 |
mixed endoderm/mesoderm-derived structure | 8.77e-12 | 35 |
lateral plate mesoderm | 8.87e-10 | 87 |
segment of respiratory tract | 1.28e-09 | 27 |
primordium | 1.44e-07 | 134 |