FFCP PHASE1:Mm9::chr15:41680509..41680512,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=52 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr15:41680509..41680512,+ | |||
|description=CAGE_peak_at_chr15:41680509..41680512,+ | |description=CAGE_peak_at_chr15:41680509..41680512,+ | ||
|id=chr15:41680509..41680512,+ | |id=chr15:41680509..41680512,+ | ||
|ontology_enrichment_celltype=CL:0000540!4.80e-13!33;CL:0000047!4.80e-13!33;CL:0000031!4.80e-13!33;CL:0000404!4.80e-13!33;CL:0000393!2.34e-12!39;CL:0000211!2.34e-12!39;CL:0000221!1.95e-11!44;CL:0000133!1.95e-11!44;CL:0002319!6.05e-11!43;CL:0000055!3.75e-10!50;CL:0000107!8.65e-08!9;CL:0000117!7.15e-07!23;CL:0000337!7.15e-07!23 | |ontology_enrichment_celltype=CL:0000540!4.80e-13!33;CL:0000047!4.80e-13!33;CL:0000031!4.80e-13!33;CL:0000404!4.80e-13!33;CL:0000393!2.34e-12!39;CL:0000211!2.34e-12!39;CL:0000221!1.95e-11!44;CL:0000133!1.95e-11!44;CL:0002319!6.05e-11!43;CL:0000055!3.75e-10!50;CL:0000107!8.65e-08!9;CL:0000117!7.15e-07!23;CL:0000337!7.15e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.23e-28,33;CL:0000047,1.23e-28,33;CL:0000031,1.23e-28,33;CL:0000404,1.23e-28,33;CL:0000393,1.60e-26,39;CL:0000211,1.60e-26,39;CL:0002319,1.29e-23,43;CL:0000221,5.42e-23,44;CL:0000133,5.42e-23,44;CL:0000107,1.20e-22,9;CL:0002321,2.08e-20,70;CL:0000117,2.57e-12,23;CL:0000337,2.57e-12,23;CL:0000723,8.83e-12,91;CL:0000048,8.83e-12,91;CL:0000034,8.62e-11,97;CL:0002614,1.29e-10,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.99e-10!75;UBERON:0001016!2.99e-10!75;UBERON:0001017!1.30e-09!73;UBERON:0005743!1.30e-09!73;UBERON:0004121!3.09e-09!102;UBERON:0000924!3.09e-09!102;UBERON:0006601!3.09e-09!102;UBERON:0000010!2.59e-08!11;UBERON:0002410!8.65e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,8.42e-23,11;UBERON:0002410,1.20e-22,9;UBERON:0001016,2.31e-13,75;UBERON:0001017,2.39e-12,73;UBERON:0000013,5.25e-11,3;UBERON:0002038,1.29e-10,3;UBERON:0009663,1.29e-10,3;UBERON:0009661,1.29e-10,3;UBERON:0000125,1.29e-10,3;UBERON:0002308,1.29e-10,3;UBERON:0010313,1.74e-10,3;UBERON:0002342,1.74e-10,3;UBERON:0002005,1.74e-10,3;UBERON:0005428,1.74e-10,3;UBERON:0005062,1.74e-10,3;UBERON:0004121,1.06e-09,95;UBERON:0000924,1.06e-09,95;UBERON:0006601,1.06e-09,95;UBERON:0002950,4.59e-08,4;UBERON:0001891,4.59e-08,4;UBERON:0009616,4.59e-08,4;UBERON:0010286,4.59e-08,4 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0.258246646883153,0,0,0,0.0797721589953364,0.513602189793617,0.174840804837995,0,0.404950534779652,0.699561878128147,0,0.274228867211478,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0.219686182734472,0.388859798148567,0,0,0,0,0,1.54355661621568,0.85960031981627,0.515672092277442,0,1.05798195854407,0,0,0,0,1.97773272513395,0,0,0.384218305321555,0.829516898467821,0.405017814995072,0.210324961351382,1.42825492201902,0.883474163806454,0.734944795289724,0.575072826109418,0,0,2.29837208553338,2.4577045320999,0.263772575460388,0.0914876436024097,1.56274011167028,1.3959149950069,3.37657566019008,2.90316670775939,3.83017161115768,1.42371680799103,0.186399445825301,0.227178579999552,1.058001841495,0,0,0,3.2382191498269,0,0,0,0,0,0.35333957451034,0.704217098883403,1.28326477414318,0,14.2213340630666,0.216491041011214,0,0,0,0,0,0,0,0,0.301445281105245,0.23517741427141,0.125666591329675,0.741584903203122,0,0,0.161766849947409,0,0,0,0.878342391034642,0.83778682725382,0,0,0,0,0.449371918214468,0,0,0.347648640384553,0,0.41557608911912,0,0.101839363850316,0.248813941220186,0,0,0.130120442962704,0,0.180062129805349,0.30140963567143,0.0680364991513279,0.384341160854549,0.0937017245597288,0.258703370739016,0,0.189106080167819,0,0,0.556094498451196,0,0.411564272815887,0,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0.697601834251224,0.268273401399619,0.233530684734339,0.16455984991348,0.32833492815819,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.210289948564127,0,0,0.528901133327089,0,0.232236671860439,0,0,0,0.380451252225118,0.474529061544512,0.164698954724011,0.251335208800269,0.198956472041151,0.19496408711912,0,0.216138049874694,0,0,0.456994050438915,0,0.203651327845314,0.387904974335251,0.210407459670956,0.189709611372772,0.442830443938806,0,0.246794327843601,0,0,0.196558995113203,0,0.202860121388503,0.241177159752417,0,0,0.162135226775035,0,4.31304619582064,0.372140947668503,0.312037673114561,0.252578877947112,0.179397413521912,0,0.184753190166605,0.189491411770485,0,0.169745085775188,0.234690248288502,0.670025029767263,0,0,0,0.8858587585951,0.318909537314974,0,0,0.144649058581512,0,0,0.491764273019036,0,0.481651769963376,0.117211686592203,0,0.252470927204373,1.89304931649754,2.34263246577983,2.58508077279359,0.955875191810208,2.00518806674155,1.98153571552183,2.42886421004937,2.63030272120181,3.55759000151871,0.321321316421807,0,0.178065603667255,0,0.164970122972535,0,0,0,0.377210159511796,0.295301892880773,0.307435147943927,0,0.363533729477506,0.712994756769443,0,2.10837217149998,1.03135543248187,0,0.36012218806262,0.129358683782755,0.214337035031592,0,0,0,0,0,0.21183207086382,0,0,0.161464426695906,0.0603129249281559,0.119372344003136,0,0,0.18542530201051,0,0.206386867963223,0,0.188368457004691,0.136694227721025,0.457556346413045,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0.436725127492355,0.269728692769641,0.247960367176008,0.26175594198403,0.129614973291793,0.621339313086926,0,0,0,0,0.258319646955462,0,0,0,0,0,0,0.632022241256357,0,0.205421914329655,0,0,0,0.240390899039938,0,0.201932899896295,0.0762068066549998,0.201652370273681,0.292373642219257,0.0962118416403295,0,0,0.221985953374065,0.0897138566094757,0,0.19318959403219,0.375364950902364,0,0,0,0,0,0,0.68741272937475,0.685082519770642,0.755393897389701,0,0.45032120322422,1.35942722695261,0.51776031175182,0.103787347584177,0,0.170733605754134,0.243106717068294,0,0,0.222246727801615,0.206035057238894,0,0,0,0.188626341386076,0.0936415074698824,0.128050304809739,0.0574354689556133,0,0.115884325944855,0.192909220463705,0,0,0.685738504770831,0.354951612318675,0.715308569841963,0.436039249896986,0.0941093804153306,0.338458431566706,0,0,0.407412341537585,0,0,0.197008964751127,0.409231043169689,0,0.192906610981141,0,0,0.214871054048298,0,0,0.231867835620421 | |phase1_expression=0.480446541314382,0,0,0,0,0,0,0.258246646883153,0,0,0,0.0797721589953364,0.513602189793617,0.174840804837995,0,0.404950534779652,0.699561878128147,0,0.274228867211478,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0.219686182734472,0.388859798148567,0,0,0,0,0,1.54355661621568,0.85960031981627,0.515672092277442,0,1.05798195854407,0,0,0,0,1.97773272513395,0,0,0.384218305321555,0.829516898467821,0.405017814995072,0.210324961351382,1.42825492201902,0.883474163806454,0.734944795289724,0.575072826109418,0,0,2.29837208553338,2.4577045320999,0.263772575460388,0.0914876436024097,1.56274011167028,1.3959149950069,3.37657566019008,2.90316670775939,3.83017161115768,1.42371680799103,0.186399445825301,0.227178579999552,1.058001841495,0,0,0,3.2382191498269,0,0,0,0,0,0.35333957451034,0.704217098883403,1.28326477414318,0,14.2213340630666,0.216491041011214,0,0,0,0,0,0,0,0,0.301445281105245,0.23517741427141,0.125666591329675,0.741584903203122,0,0,0.161766849947409,0,0,0,0.878342391034642,0.83778682725382,0,0,0,0,0.449371918214468,0,0,0.347648640384553,0,0.41557608911912,0,0.101839363850316,0.248813941220186,0,0,0.130120442962704,0,0.180062129805349,0.30140963567143,0.0680364991513279,0.384341160854549,0.0937017245597288,0.258703370739016,0,0.189106080167819,0,0,0.556094498451196,0,0.411564272815887,0,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0.697601834251224,0.268273401399619,0.233530684734339,0.16455984991348,0.32833492815819,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.210289948564127,0,0,0.528901133327089,0,0.232236671860439,0,0,0,0.380451252225118,0.474529061544512,0.164698954724011,0.251335208800269,0.198956472041151,0.19496408711912,0,0.216138049874694,0,0,0.456994050438915,0,0.203651327845314,0.387904974335251,0.210407459670956,0.189709611372772,0.442830443938806,0,0.246794327843601,0,0,0.196558995113203,0,0.202860121388503,0.241177159752417,0,0,0.162135226775035,0,4.31304619582064,0.372140947668503,0.312037673114561,0.252578877947112,0.179397413521912,0,0.184753190166605,0.189491411770485,0,0.169745085775188,0.234690248288502,0.670025029767263,0,0,0,0.8858587585951,0.318909537314974,0,0,0.144649058581512,0,0,0.491764273019036,0,0.481651769963376,0.117211686592203,0,0.252470927204373,1.89304931649754,2.34263246577983,2.58508077279359,0.955875191810208,2.00518806674155,1.98153571552183,2.42886421004937,2.63030272120181,3.55759000151871,0.321321316421807,0,0.178065603667255,0,0.164970122972535,0,0,0,0.377210159511796,0.295301892880773,0.307435147943927,0,0.363533729477506,0.712994756769443,0,2.10837217149998,1.03135543248187,0,0.36012218806262,0.129358683782755,0.214337035031592,0,0,0,0,0,0.21183207086382,0,0,0.161464426695906,0.0603129249281559,0.119372344003136,0,0,0.18542530201051,0,0.206386867963223,0,0.188368457004691,0.136694227721025,0.457556346413045,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0.436725127492355,0.269728692769641,0.247960367176008,0.26175594198403,0.129614973291793,0.621339313086926,0,0,0,0,0.258319646955462,0,0,0,0,0,0,0.632022241256357,0,0.205421914329655,0,0,0,0.240390899039938,0,0.201932899896295,0.0762068066549998,0.201652370273681,0.292373642219257,0.0962118416403295,0,0,0.221985953374065,0.0897138566094757,0,0.19318959403219,0.375364950902364,0,0,0,0,0,0,0.68741272937475,0.685082519770642,0.755393897389701,0,0.45032120322422,1.35942722695261,0.51776031175182,0.103787347584177,0,0.170733605754134,0.243106717068294,0,0,0.222246727801615,0.206035057238894,0,0,0,0.188626341386076,0.0936415074698824,0.128050304809739,0.0574354689556133,0,0.115884325944855,0.192909220463705,0,0,0.685738504770831,0.354951612318675,0.715308569841963,0.436039249896986,0.0941093804153306,0.338458431566706,0,0,0.407412341537585,0,0,0.197008964751127,0.409231043169689,0,0.192906610981141,0,0,0.214871054048298,0,0,0.231867835620421 | ||
|short_description=p@chr15:41680509..41680512,+ | |short_description=p@chr15:41680509..41680512,+ | ||
}} | }} |
Latest revision as of 06:17, 5 August 2015
Short description: | p@chr15:41680509..41680512, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:41680509..41680512, + |
Coexpression cluster: | MCL_coexpression_mm9:52 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.23e-28 | 33 |
neuronal stem cell | 1.23e-28 | 33 |
neuroblast | 1.23e-28 | 33 |
electrically signaling cell | 1.23e-28 | 33 |
electrically responsive cell | 1.60e-26 | 39 |
electrically active cell | 1.60e-26 | 39 |
neural cell | 1.29e-23 | 43 |
ectodermal cell | 5.42e-23 | 44 |
neurectodermal cell | 5.42e-23 | 44 |
autonomic neuron | 1.20e-22 | 9 |
embryonic cell | 2.08e-20 | 70 |
CNS neuron (sensu Vertebrata) | 2.57e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.57e-12 | 23 |
somatic stem cell | 8.83e-12 | 91 |
multi fate stem cell | 8.83e-12 | 91 |
stem cell | 8.62e-11 | 97 |
neuron of the substantia nigra | 1.29e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 8.42e-23 | 11 |
autonomic nervous system | 1.20e-22 | 9 |
nervous system | 2.31e-13 | 75 |
central nervous system | 2.39e-12 | 73 |
sympathetic nervous system | 5.25e-11 | 3 |
substantia nigra | 1.29e-10 | 3 |
telencephalic nucleus | 1.29e-10 | 3 |
midbrain nucleus | 1.29e-10 | 3 |
neural nucleus | 1.29e-10 | 3 |
nucleus of brain | 1.29e-10 | 3 |
neural crest-derived structure | 1.74e-10 | 3 |
neural crest | 1.74e-10 | 3 |
enteric nervous system | 1.74e-10 | 3 |
vagal neural crest | 1.74e-10 | 3 |
neural fold | 1.74e-10 | 3 |
ectoderm-derived structure | 1.06e-09 | 95 |
ectoderm | 1.06e-09 | 95 |
presumptive ectoderm | 1.06e-09 | 95 |
regional part of midbrain | 4.59e-08 | 4 |
midbrain | 4.59e-08 | 4 |
presumptive midbrain | 4.59e-08 | 4 |
midbrain neural tube | 4.59e-08 | 4 |