FFCP PHASE1:Mm9::chr1:169619239..169619257,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=110648 | |EntrezGene=110648 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=148 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JKU8 | |UniProt=Q9JKU8 | ||
|association_with_transcript=-112bp_to_ENSMUST00000111377_5end | |association_with_transcript=-112bp_to_ENSMUST00000111377_5end | ||
|cluster_id=chr1:169619239..169619257,+ | |||
|description=CAGE_peak_4_at_Lmx1a_5end | |description=CAGE_peak_4_at_Lmx1a_5end | ||
|id=chr1:169619239..169619257,+ | |id=chr1:169619239..169619257,+ | ||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.68e-58,2;CL:0002604,1.68e-58,2;CL:0000128,1.98e-20,6;CL:0000126,1.98e-20,6;CL:0000127,1.98e-20,6;CL:0002453,1.23e-15,8;CL:0000333,9.45e-13,10;CL:0000095,9.45e-13,10;CL:0000243,9.45e-13,10;CL:0000123,9.45e-13,10;CL:0000125,9.45e-13,10;CL:0000030,9.45e-13,10;CL:0000339,9.45e-13,10;CL:0002613,7.15e-11,3;CL:0002319,4.30e-07,43;CL:0000221,5.93e-07,44;CL:0000133,5.93e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.59e-09!63;UBERON:0003056!1.02e-08!49;UBERON:0002420!1.84e-08!8;UBERON:0007245!1.84e-08!8;UBERON:0010009!1.84e-08!8;UBERON:0010011!1.84e-08!8;UBERON:0000454!1.84e-08!8;UBERON:0002346!7.71e-07!71;UBERON:0003075!7.71e-07!71;UBERON:0007284!7.71e-07!71;UBERON:0004121!7.72e-07!102;UBERON:0000924!7.72e-07!102;UBERON:0006601!7.72e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,1.08e-17,7;UBERON:0003022,1.08e-17,7;UBERON:0002421,1.08e-17,7;UBERON:0000349,1.08e-17,7;UBERON:0002600,1.08e-17,7;UBERON:0003528,4.90e-10,29;UBERON:0002791,4.90e-10,29;UBERON:0001893,4.90e-10,29;UBERON:0002020,1.04e-08,34;UBERON:0002619,5.82e-08,17;UBERON:0002780,1.01e-07,39;UBERON:0001890,1.01e-07,39;UBERON:0006240,1.01e-07,39;UBERON:0003080,1.49e-07,40;UBERON:0000369,4.77e-07,5;UBERON:0002435,4.77e-07,5;UBERON:0000204,4.77e-07,5;UBERON:0010082,4.77e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,3.51497892375155,4.27745777963423,0.279972843250725,0,0,0,0,0,0,0,0.404632921719196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263772575460388,0.365950574409639,1.04182674111352,0,0.56276261003168,0.61119299110724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0,0,0.251308704225729,0,0,0.20778804455956,0.162241263067758,0.509196819251581,0,0,0.210441855886474,0,0,0,0.150704817835715,0.272145996605311,0.2562274405697,0.281105173679186,0.517406741478031,0,0,0,0,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0,0.141940085208269,0.35613120733451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0.214337035031592,0,0,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0,0,0.222246727801615,0,0.320919209591815,0,0,0,0.0936415074698824,0,0,0,0,0.578727661391115,0,0,0.342869252385415,0,0.238436189947321,0.145346416632329,0,0,0,0,0,0,0.118635018124174,0,0,0,0.192906610981141,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0 | |phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,3.51497892375155,4.27745777963423,0.279972843250725,0,0,0,0,0,0,0,0.404632921719196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263772575460388,0.365950574409639,1.04182674111352,0,0.56276261003168,0.61119299110724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845060518660083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0,0,0.251308704225729,0,0,0.20778804455956,0.162241263067758,0.509196819251581,0,0,0.210441855886474,0,0,0,0.150704817835715,0.272145996605311,0.2562274405697,0.281105173679186,0.517406741478031,0,0,0,0,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0,0.141940085208269,0.35613120733451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0.214337035031592,0,0,0,0,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0,0,0.222246727801615,0,0.320919209591815,0,0,0,0.0936415074698824,0,0,0,0,0.578727661391115,0,0,0.342869252385415,0,0.238436189947321,0.145346416632329,0,0,0,0,0,0,0.118635018124174,0,0,0,0.192906610981141,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0 | ||
|short_description=p4@Lmx1a | |short_description=p4@Lmx1a | ||
}} | }} |
Latest revision as of 17:56, 26 September 2015
Short description: | p4@Lmx1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Lmx1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:148 |
Association with transcript: | -112bp_to_ENSMUST00000111377_5end |
EntrezGene: | Lmx1a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.68e-58 | 2 |
astrocyte of the hippocampus | 1.68e-58 | 2 |
oligodendrocyte | 1.98e-20 | 6 |
macroglial cell | 1.98e-20 | 6 |
astrocyte | 1.98e-20 | 6 |
oligodendrocyte precursor cell | 1.23e-15 | 8 |
migratory neural crest cell | 9.45e-13 | 10 |
neuron associated cell | 9.45e-13 | 10 |
glial cell (sensu Vertebrata) | 9.45e-13 | 10 |
neuron associated cell (sensu Vertebrata) | 9.45e-13 | 10 |
glial cell | 9.45e-13 | 10 |
glioblast | 9.45e-13 | 10 |
glioblast (sensu Vertebrata) | 9.45e-13 | 10 |
striatum neuron | 7.15e-11 | 3 |
neural cell | 4.30e-07 | 43 |
ectodermal cell | 5.93e-07 | 44 |
neurectodermal cell | 5.93e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 1.08e-17 | 7 |
lobe parts of cerebral cortex | 1.08e-17 | 7 |
hippocampal formation | 1.08e-17 | 7 |
limbic system | 1.08e-17 | 7 |
limbic lobe | 1.08e-17 | 7 |
brain grey matter | 4.90e-10 | 29 |
regional part of telencephalon | 4.90e-10 | 29 |
telencephalon | 4.90e-10 | 29 |
gray matter | 1.04e-08 | 34 |
regional part of cerebral cortex | 5.82e-08 | 17 |
regional part of forebrain | 1.01e-07 | 39 |
forebrain | 1.01e-07 | 39 |
future forebrain | 1.01e-07 | 39 |
anterior neural tube | 1.49e-07 | 40 |
corpus striatum | 4.77e-07 | 5 |
striatum | 4.77e-07 | 5 |
ventral part of telencephalon | 4.77e-07 | 5 |
future corpus striatum | 4.77e-07 | 5 |