FFCP PHASE1:Hg19::chr12:10875831..10876025,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8531 | |EntrezGene=8531 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2428 | |HGNC=2428 | ||
|TSSclassifier=strong | |||
|UniProt=P16989 | |UniProt=P16989 | ||
|association_with_transcript=0bp_to_ENST00000228251,ENST00000279550,NM_001145426,NM_003651,uc001qyt.2,uc001qyu.2_5end | |association_with_transcript=0bp_to_ENST00000228251,ENST00000279550,NM_001145426,NM_003651,uc001qyt.2,uc001qyu.2_5end | ||
|cluster_id=chr12:10875831..10876025,- | |||
|coexpression_cluster_id=C72 | |||
|description=CAGE_peak_1_at_CSDA_5end | |description=CAGE_peak_1_at_CSDA_5end | ||
|id=chr12:10875831..10876025,- | |id=chr12:10875831..10876025,- | ||
|ontology_enrichment_celltype=CL:0000066!5.19e-11!254;CL:0002139!1.99e-08!24;CL:0000115!4.00e-07!35;CL:0000076!4.86e-07!62;CL:0000860!5.35e-07!45;CL:0000071!9.96e-07!18;CL:0002546!9.96e-07!18 | |ontology_enrichment_celltype=CL:0000066!5.19e-11!254;CL:0002139!1.99e-08!24;CL:0000115!4.00e-07!35;CL:0000076!4.86e-07!62;CL:0000860!5.35e-07!45;CL:0000071!9.96e-07!18;CL:0002546!9.96e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.99e-08;24!CL:0000860;2.16e-08;33!CL:0002057;2.16e-08;33!CL:0000071;9.94e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.03e-10,253;CL:0002139,1.99e-08,24;CL:0000076,2.76e-07,63;CL:0000071,9.96e-07,18;CL:0002546,9.96e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;9.94e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!6.36e-20!448;UBERON:0004120!6.36e-20!448;UBERON:0006603!6.36e-20!448;UBERON:0000468!1.59e-12!659;UBERON:0003081!1.48e-11!216;UBERON:0000922!2.87e-10!612;UBERON:0000467!2.38e-09!625;UBERON:0000480!4.04e-09!626;UBERON:0000923!4.17e-09!604;UBERON:0005291!4.17e-09!604;UBERON:0006598!4.17e-09!604;UBERON:0002532!4.17e-09!604;UBERON:0002050!4.62e-09!605;UBERON:0005423!4.62e-09!605;UBERON:0001009!1.10e-08!113;UBERON:0004535!1.36e-07!110;UBERON:0003103!2.08e-07!69;UBERON:0003104!3.23e-07!238;UBERON:0009142!3.23e-07!238;UBERON:0001986!9.96e-07!18;UBERON:0004638!9.96e-07!18;UBERON:0004852!9.96e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;9.94e-07;18!UBERON:0001986;9.94e-07;18!UBERON:0004852;9.94e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,8.99e-12,315;UBERON:0004120,8.99e-12,315;UBERON:0006603,8.99e-12,315;UBERON:0003081,3.17e-10,203;UBERON:0001009,5.60e-09,112;UBERON:0000922,1.15e-08,592;UBERON:0004535,7.28e-08,109;UBERON:0005423,1.53e-07,581;UBERON:0003103,4.71e-07,68;UBERON:0004638,9.96e-07,18;UBERON:0001986,9.96e-07,18;UBERON:0004852,9.96e-07,18 | |||
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| ||
|short_description=p1@CSDA | |short_description=p1@CSDA | ||
}} | }} |
Latest revision as of 04:44, 16 September 2015
Short description: | p1@CSDA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CSDA_5end |
Coexpression cluster: | C72_skeletal_tongue_throat_heart_diaphragm_penis_left |
Association with transcript: | 0bp_to_ENST00000228251, ENST00000279550, NM_001145426, NM_003651, uc001qyt.2, uc001qyu.2_5end |
EntrezGene: | CSDA |
HGNC: | 2428 |
UniProt: | P16989 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.03e-10 | 253 |
endothelial cell of vascular tree | 1.99e-08 | 24 |
squamous epithelial cell | 2.76e-07 | 63 |
blood vessel endothelial cell | 9.96e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.96e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 8.99e-12 | 315 |
mesoderm-derived structure | 8.99e-12 | 315 |
presumptive mesoderm | 8.99e-12 | 315 |
lateral plate mesoderm | 3.17e-10 | 203 |
circulatory system | 5.60e-09 | 112 |
embryo | 1.15e-08 | 592 |
cardiovascular system | 7.28e-08 | 109 |
developing anatomical structure | 1.53e-07 | 581 |
compound organ | 4.71e-07 | 68 |
blood vessel endothelium | 9.96e-07 | 18 |
endothelium | 9.96e-07 | 18 |
cardiovascular system endothelium | 9.96e-07 | 18 |