FFCP PHASE1:Mm9::chr5:53225284..53225351,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=52206 | |EntrezGene=52206 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=321 | |||
|TSSclassifier=NA | |||
|UniProt=D6RDT6 | |UniProt=D6RDT6 | ||
|association_with_transcript=-13bp_to_ENSMUST00000144574_5end | |association_with_transcript=-13bp_to_ENSMUST00000144574_5end | ||
|cluster_id=chr5:53225284..53225351,+ | |||
|description=CAGE_peak_2_at_Anapc4_5end | |description=CAGE_peak_2_at_Anapc4_5end | ||
|id=chr5:53225284..53225351,+ | |id=chr5:53225284..53225351,+ | ||
|ontology_enrichment_celltype=CL:0000393!6.93e-16!39;CL:0000211!6.93e-16!39;CL:0000540!9.46e-14!33;CL:0000047!9.46e-14!33;CL:0000031!9.46e-14!33;CL:0000404!9.46e-14!33;CL:0000055!3.69e-09!50;CL:0000221!4.27e-08!44;CL:0000133!4.27e-08!44;CL:0000117!4.68e-08!23;CL:0000337!4.68e-08!23;CL:0002319!4.83e-08!43;CL:0000107!6.70e-07!9 | |ontology_enrichment_celltype=CL:0000393!6.93e-16!39;CL:0000211!6.93e-16!39;CL:0000540!9.46e-14!33;CL:0000047!9.46e-14!33;CL:0000031!9.46e-14!33;CL:0000404!9.46e-14!33;CL:0000055!3.69e-09!50;CL:0000221!4.27e-08!44;CL:0000133!4.27e-08!44;CL:0000117!4.68e-08!23;CL:0000337!4.68e-08!23;CL:0002319!4.83e-08!43;CL:0000107!6.70e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,6.93e-16,39;CL:0000211,6.93e-16,39;CL:0000540,9.46e-14,33;CL:0000047,9.46e-14,33;CL:0000031,9.46e-14,33;CL:0000404,9.46e-14,33;CL:0000221,4.27e-08,44;CL:0000133,4.27e-08,44;CL:0000117,4.68e-08,23;CL:0000337,4.68e-08,23;CL:0002319,4.83e-08,43;CL:0000107,6.70e-07,9 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.91e-16!75;UBERON:0001016!9.91e-16!75;UBERON:0001017!5.81e-15!73;UBERON:0005743!5.81e-15!73;UBERON:0002346!3.03e-14!71;UBERON:0003075!3.03e-14!71;UBERON:0007284!3.03e-14!71;UBERON:0004121!3.14e-14!102;UBERON:0000924!3.14e-14!102;UBERON:0006601!3.14e-14!102;UBERON:0000033!4.05e-11!63;UBERON:0001049!6.38e-11!52;UBERON:0005068!6.38e-11!52;UBERON:0006241!6.38e-11!52;UBERON:0007135!6.38e-11!52;UBERON:0003056!7.10e-11!49;UBERON:0000955!6.71e-10!50;UBERON:0006238!6.71e-10!50;UBERON:0002616!8.45e-10!49;UBERON:0003080!4.89e-09!40;UBERON:0002780!1.27e-08!39;UBERON:0001890!1.27e-08!39;UBERON:0006240!1.27e-08!39;UBERON:0002020!3.38e-08!34;UBERON:0000153!6.38e-08!94;UBERON:0000010!1.68e-07!11;UBERON:0002410!6.70e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.91e-16,75;UBERON:0001017,5.81e-15,73;UBERON:0002346,1.79e-14,64;UBERON:0003075,1.79e-14,64;UBERON:0007284,1.79e-14,64;UBERON:0010314,3.14e-14,92;UBERON:0004121,4.06e-14,95;UBERON:0000924,4.06e-14,95;UBERON:0006601,4.06e-14,95;UBERON:0010371,3.51e-12,73;UBERON:0000073,9.69e-12,54;UBERON:0001049,6.38e-11,52;UBERON:0005068,6.38e-11,52;UBERON:0006241,6.38e-11,52;UBERON:0007135,6.38e-11,52;UBERON:0003056,7.10e-11,49;UBERON:0003080,4.89e-09,40;UBERON:0000955,1.04e-08,47;UBERON:0006238,1.04e-08,47;UBERON:0002780,1.27e-08,39;UBERON:0001890,1.27e-08,39;UBERON:0006240,1.27e-08,39;UBERON:0002616,1.31e-08,46;UBERON:0002020,3.38e-08,34;UBERON:0000922,1.19e-07,320;UBERON:0000010,1.68e-07,11;UBERON:0002410,6.70e-07,9 | |||
|phase1_expression=20.8193501236232,4.18770489167233,3.63999391511629,3.93203474698879,2.50447864973174,7.72244650794693,6.30754129607919,5.03580961422147,2.25261955442667,4.21316147379588,5.82141091966717,4.30769658574817,5.9920255475922,4.10875891369288,6.66219523631325,5.06188168474565,7.69518065940961,6.62470547252299,7.26706498110415,3.81950686618227,10.7154545590348,7.4468213400664,7.57479388502913,4.31979541542198,5.73523202667925,3.44539178469012,2.58457197695445,3.66301095566011,2.85035129184561,4.28451220591882,4.21287970245079,5.08024538767705,7.99584223859941,15.8481681015439,5.48818077527422,5.15327400611326,4.90006455029686,9.20769587621197,7.0320181007142,8.37637990358077,10.5881667845583,2.04913645487534,8.25367600152961,19.1363163322877,18.6533553443907,17.6204882075214,5.47673941043627,5.45062890951116,5.05278220289285,6.41618666945135,6.15940255151595,4.31257693094915,5.36904339384756,8.70434570413613,4.7053131879945,23.9251275513431,20.057340795713,21.6582278756526,14.566785181891,22.2176211294254,9.50747105259269,7.45457970552091,8.00365316500025,4.49949858640699,2.96659908770092,0.7104801149461,4.19440154725767,5.37905627450176,22.5006458709397,15.6606888464761,18.5085965989216,19.7099179238624,16.3442720304194,23.3957426500562,19.2649396746655,22.0612508786405,26.4278114398533,18.6423513604374,21.9657342556428,14.2437190748609,18.1145534332771,23.962015045611,16.1926139420801,23.0732670112989,24.142123148736,24.7488011797881,27.1929910326287,21.2495368240843,20.976155553292,19.4974625075507,14.7830889237856,1.72084775396277,2.719885334831,2.69851595818909,4.54843492213368,3.58421509677868,6.46044332606059,10.2258193546835,9.87186817490901,11.6602059588412,15.3519327556582,16.6824420638613,20.3844191765317,21.3320010945999,11.2575341325831,11.4011939463794,8.08839112023653,4.33898742932428,7.25026074212081,13.3597925158342,16.4811060427829,14.9188084372949,11.5307748628029,14.770818774157,14.8161770990988,12.3153259503082,11.6181634835156,6.2177723475562,6.19227386364912,12.2942805960031,8.17113618303456,6.78825354389311,9.31958806090611,15.517382241612,16.7557365450764,4.08731288333746,8.50687383992034,9.59844369589452,9.27612657633372,21.5698520742945,16.9275223042892,23.4973638451056,13.9059456153821,13.0414883238469,19.5320761885986,14.4394724130304,19.3494791315601,9.33052279575698,11.1198013710817,6.52369753248069,21.2096322029207,23.2201125477808,20.1669585381991,22.0029034040144,19.6625482547337,19.0889443224426,21.082888025939,11.3829483125167,19.8322553498215,23.6382600209774,22.1698416446576,27.3994665534469,18.3511184488895,17.7608604926305,12.1411460480687,18.7092210809384,7.72434506044558,7.97778512055617,10.5140494776369,12.4275463521301,14.540615718828,16.0255234700303,16.5721314909647,12.7896750635812,10.7986979021165,10.4640275137684,10.7309360559848,10.6256461554124,11.6837493438571,10.5067177010621,13.2952847655203,12.5731989185786,13.8316572633362,13.2864354572768,18.2952255250791,29.2249099157168,2.64335026387038,5.28901133327089,19.1959425481711,19.043407092556,15.3352278973291,11.4959609035305,10.229390016864,9.70150693174052,6.64340686162316,8.39964669092456,9.80207314321051,7.16243299348143,7.21367122340745,3.59527763461689,3.24207074812041,4.58024928485045,16.8804431848243,14.6238096140453,20.2873924211545,16.2921062276251,14.7403890247396,13.1153983194896,12.7737804991,6.6424566590821,6.59394656933774,5.42947521255922,2.96452627087149,9.67701613153345,8.45203678986773,6.07127703439105,6.28866376304359,7.95884627182976,5.60176873919124,6.32931502391783,5.83686816390127,6.31491250332587,1.43768206527355,4.83783231969054,4.36852742360385,2.52578877947112,4.4849353380478,2.41221760681684,10.3461786493299,23.1179522359991,23.3039916312097,19.5206848641466,17.6017686216377,19.095713348367,18.5674039891091,15.8058254764817,13.0837169608139,15.5025282754142,15.6265673284337,10.8149787712387,10.8791538575514,8.82359257347221,1.50791283939272,6.52686820582452,5.90117127622843,8.55403913544671,19.5871719785106,20.1604100938589,20.4918681720844,13.1284882146274,28.3957397474631,20.6932534477218,27.3587715120655,23.4189421993501,26.2902435417225,26.8922704249391,23.8838313988188,26.8875389278407,31.6230222357219,16.0660658210904,10.5035663054119,18.5188227813945,21.501078634672,15.6721616823909,2.65490276679926,16.2663026223838,13.302236506449,15.2770114602277,8.56375489354241,10.1453598821496,12.4045580720746,12.3601468022352,11.0514187299264,6.32073515871632,3.16255825724996,2.06271086496374,20.7668159509811,21.6073312837572,13.8413791647547,19.7190072229065,22.5222096725687,19.9773075714319,17.7712942250291,15.22324745573,12.9069439435041,13.1335883935569,7.27743713581374,8.57408515295696,12.1098320021929,11.7007074360622,8.95292580023523,6.07321329056727,4.95517422270746,21.6947603352296,6.32222258952055,17.9556575128004,11.4820606969221,6.78126445216888,6.28793447516716,4.34678529092393,6.96911562974807,8.25713568709582,8.7065983496787,3.81868247206045,23.8833675153757,14.0290432317526,13.5006676027252,12.3362094648537,9.17122767733946,12.5423842137883,11.571483801547,8.63794608547298,5.31421390496351,3.72803587852155,26.4935681181569,21.081832992201,19.0277264025662,22.3618866595655,17.1782565225382,18.5851738039856,21.00694571759,20.962905959876,27.7877262728134,25.3663326867306,20.7381604505663,8.84831137758899,12.5689633479902,10.7846505023069,12.2125573599127,10.2045216530464,9.53670502950071,11.658958603437,11.3720935924424,12.4188733436222,10.592746125045,8.87270429204197,11.3051141658113,8.37043022270866,11.92144402252,8.61575457737803,15.5390167361845,12.9187953517645,13.0950000763981,12.5573236120924,8.82107634620555,12.454310450174,6.85978813053011,9.02829787263654,21.4605700194485,20.2543104063158,16.6139698897425,19.4194096048367,16.4419804744954,16.6186657425734,13.5004500046361,17.5625269257446,14.0474146785103,17.6038505995619,25.9468368960442,27.1336913912701,21.8539015365292,18.4761104971903,17.3978924981225,18.2005073365514,16.0017644017163,13.1862436632892,10.5903339165299,11.6240717411347,12.9274442944022,12.449338531481,17.1363958669885,15.2379862723589,16.483979590261,20.4806287251722,15.1808466987761,16.2043745189512,10.3021475200827,15.1614887738429,13.7147700954166,18.4574838405711,18.1211504359964,18.7496877455704,16.9396884747595,15.3998586362851,14.2683818840763,15.7841826862706,14.3952360676613,21.8845485946518,16.8461725736327,14.677167873959,18.0061658994663,19.0572314658738,15.2396222675102,18.485982767408,13.5680332898337,12.6773921888496,12.8163182486125,10.5883881177367,11.3615239454007 | |phase1_expression=20.8193501236232,4.18770489167233,3.63999391511629,3.93203474698879,2.50447864973174,7.72244650794693,6.30754129607919,5.03580961422147,2.25261955442667,4.21316147379588,5.82141091966717,4.30769658574817,5.9920255475922,4.10875891369288,6.66219523631325,5.06188168474565,7.69518065940961,6.62470547252299,7.26706498110415,3.81950686618227,10.7154545590348,7.4468213400664,7.57479388502913,4.31979541542198,5.73523202667925,3.44539178469012,2.58457197695445,3.66301095566011,2.85035129184561,4.28451220591882,4.21287970245079,5.08024538767705,7.99584223859941,15.8481681015439,5.48818077527422,5.15327400611326,4.90006455029686,9.20769587621197,7.0320181007142,8.37637990358077,10.5881667845583,2.04913645487534,8.25367600152961,19.1363163322877,18.6533553443907,17.6204882075214,5.47673941043627,5.45062890951116,5.05278220289285,6.41618666945135,6.15940255151595,4.31257693094915,5.36904339384756,8.70434570413613,4.7053131879945,23.9251275513431,20.057340795713,21.6582278756526,14.566785181891,22.2176211294254,9.50747105259269,7.45457970552091,8.00365316500025,4.49949858640699,2.96659908770092,0.7104801149461,4.19440154725767,5.37905627450176,22.5006458709397,15.6606888464761,18.5085965989216,19.7099179238624,16.3442720304194,23.3957426500562,19.2649396746655,22.0612508786405,26.4278114398533,18.6423513604374,21.9657342556428,14.2437190748609,18.1145534332771,23.962015045611,16.1926139420801,23.0732670112989,24.142123148736,24.7488011797881,27.1929910326287,21.2495368240843,20.976155553292,19.4974625075507,14.7830889237856,1.72084775396277,2.719885334831,2.69851595818909,4.54843492213368,3.58421509677868,6.46044332606059,10.2258193546835,9.87186817490901,11.6602059588412,15.3519327556582,16.6824420638613,20.3844191765317,21.3320010945999,11.2575341325831,11.4011939463794,8.08839112023653,4.33898742932428,7.25026074212081,13.3597925158342,16.4811060427829,14.9188084372949,11.5307748628029,14.770818774157,14.8161770990988,12.3153259503082,11.6181634835156,6.2177723475562,6.19227386364912,12.2942805960031,8.17113618303456,6.78825354389311,9.31958806090611,15.517382241612,16.7557365450764,4.08731288333746,8.50687383992034,9.59844369589452,9.27612657633372,21.5698520742945,16.9275223042892,23.4973638451056,13.9059456153821,13.0414883238469,19.5320761885986,14.4394724130304,19.3494791315601,9.33052279575698,11.1198013710817,6.52369753248069,21.2096322029207,23.2201125477808,20.1669585381991,22.0029034040144,19.6625482547337,19.0889443224426,21.082888025939,11.3829483125167,19.8322553498215,23.6382600209774,22.1698416446576,27.3994665534469,18.3511184488895,17.7608604926305,12.1411460480687,18.7092210809384,7.72434506044558,7.97778512055617,10.5140494776369,12.4275463521301,14.540615718828,16.0255234700303,16.5721314909647,12.7896750635812,10.7986979021165,10.4640275137684,10.7309360559848,10.6256461554124,11.6837493438571,10.5067177010621,13.2952847655203,12.5731989185786,13.8316572633362,13.2864354572768,18.2952255250791,29.2249099157168,2.64335026387038,5.28901133327089,19.1959425481711,19.043407092556,15.3352278973291,11.4959609035305,10.229390016864,9.70150693174052,6.64340686162316,8.39964669092456,9.80207314321051,7.16243299348143,7.21367122340745,3.59527763461689,3.24207074812041,4.58024928485045,16.8804431848243,14.6238096140453,20.2873924211545,16.2921062276251,14.7403890247396,13.1153983194896,12.7737804991,6.6424566590821,6.59394656933774,5.42947521255922,2.96452627087149,9.67701613153345,8.45203678986773,6.07127703439105,6.28866376304359,7.95884627182976,5.60176873919124,6.32931502391783,5.83686816390127,6.31491250332587,1.43768206527355,4.83783231969054,4.36852742360385,2.52578877947112,4.4849353380478,2.41221760681684,10.3461786493299,23.1179522359991,23.3039916312097,19.5206848641466,17.6017686216377,19.095713348367,18.5674039891091,15.8058254764817,13.0837169608139,15.5025282754142,15.6265673284337,10.8149787712387,10.8791538575514,8.82359257347221,1.50791283939272,6.52686820582452,5.90117127622843,8.55403913544671,19.5871719785106,20.1604100938589,20.4918681720844,13.1284882146274,28.3957397474631,20.6932534477218,27.3587715120655,23.4189421993501,26.2902435417225,26.8922704249391,23.8838313988188,26.8875389278407,31.6230222357219,16.0660658210904,10.5035663054119,18.5188227813945,21.501078634672,15.6721616823909,2.65490276679926,16.2663026223838,13.302236506449,15.2770114602277,8.56375489354241,10.1453598821496,12.4045580720746,12.3601468022352,11.0514187299264,6.32073515871632,3.16255825724996,2.06271086496374,20.7668159509811,21.6073312837572,13.8413791647547,19.7190072229065,22.5222096725687,19.9773075714319,17.7712942250291,15.22324745573,12.9069439435041,13.1335883935569,7.27743713581374,8.57408515295696,12.1098320021929,11.7007074360622,8.95292580023523,6.07321329056727,4.95517422270746,21.6947603352296,6.32222258952055,17.9556575128004,11.4820606969221,6.78126445216888,6.28793447516716,4.34678529092393,6.96911562974807,8.25713568709582,8.7065983496787,3.81868247206045,23.8833675153757,14.0290432317526,13.5006676027252,12.3362094648537,9.17122767733946,12.5423842137883,11.571483801547,8.63794608547298,5.31421390496351,3.72803587852155,26.4935681181569,21.081832992201,19.0277264025662,22.3618866595655,17.1782565225382,18.5851738039856,21.00694571759,20.962905959876,27.7877262728134,25.3663326867306,20.7381604505663,8.84831137758899,12.5689633479902,10.7846505023069,12.2125573599127,10.2045216530464,9.53670502950071,11.658958603437,11.3720935924424,12.4188733436222,10.592746125045,8.87270429204197,11.3051141658113,8.37043022270866,11.92144402252,8.61575457737803,15.5390167361845,12.9187953517645,13.0950000763981,12.5573236120924,8.82107634620555,12.454310450174,6.85978813053011,9.02829787263654,21.4605700194485,20.2543104063158,16.6139698897425,19.4194096048367,16.4419804744954,16.6186657425734,13.5004500046361,17.5625269257446,14.0474146785103,17.6038505995619,25.9468368960442,27.1336913912701,21.8539015365292,18.4761104971903,17.3978924981225,18.2005073365514,16.0017644017163,13.1862436632892,10.5903339165299,11.6240717411347,12.9274442944022,12.449338531481,17.1363958669885,15.2379862723589,16.483979590261,20.4806287251722,15.1808466987761,16.2043745189512,10.3021475200827,15.1614887738429,13.7147700954166,18.4574838405711,18.1211504359964,18.7496877455704,16.9396884747595,15.3998586362851,14.2683818840763,15.7841826862706,14.3952360676613,21.8845485946518,16.8461725736327,14.677167873959,18.0061658994663,19.0572314658738,15.2396222675102,18.485982767408,13.5680332898337,12.6773921888496,12.8163182486125,10.5883881177367,11.3615239454007 | ||
|short_description=p2@Anapc4 | |short_description=p2@Anapc4 | ||
}} | }} |
Latest revision as of 02:01, 26 September 2015
Short description: | p2@Anapc4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Anapc4_5end |
Coexpression cluster: | MCL_coexpression_mm9:321 |
Association with transcript: | -13bp_to_ENSMUST00000144574_5end |
EntrezGene: | Anapc4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 6.93e-16 | 39 |
electrically active cell | 6.93e-16 | 39 |
neuron | 9.46e-14 | 33 |
neuronal stem cell | 9.46e-14 | 33 |
neuroblast | 9.46e-14 | 33 |
electrically signaling cell | 9.46e-14 | 33 |
ectodermal cell | 4.27e-08 | 44 |
neurectodermal cell | 4.27e-08 | 44 |
CNS neuron (sensu Vertebrata) | 4.68e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.68e-08 | 23 |
neural cell | 4.83e-08 | 43 |
autonomic neuron | 6.70e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.91e-16 | 75 |
central nervous system | 5.81e-15 | 73 |
neurectoderm | 1.79e-14 | 64 |
neural plate | 1.79e-14 | 64 |
presumptive neural plate | 1.79e-14 | 64 |
structure with developmental contribution from neural crest | 3.14e-14 | 92 |
ectoderm-derived structure | 4.06e-14 | 95 |
ectoderm | 4.06e-14 | 95 |
presumptive ectoderm | 4.06e-14 | 95 |
ecto-epithelium | 3.51e-12 | 73 |
regional part of nervous system | 9.69e-12 | 54 |
neural tube | 6.38e-11 | 52 |
neural rod | 6.38e-11 | 52 |
future spinal cord | 6.38e-11 | 52 |
neural keel | 6.38e-11 | 52 |
pre-chordal neural plate | 7.10e-11 | 49 |
anterior neural tube | 4.89e-09 | 40 |
brain | 1.04e-08 | 47 |
future brain | 1.04e-08 | 47 |
regional part of forebrain | 1.27e-08 | 39 |
forebrain | 1.27e-08 | 39 |
future forebrain | 1.27e-08 | 39 |
regional part of brain | 1.31e-08 | 46 |
gray matter | 3.38e-08 | 34 |
embryo | 1.19e-07 | 320 |
peripheral nervous system | 1.68e-07 | 11 |
autonomic nervous system | 6.70e-07 | 9 |