FFCP PHASE1:Mm9::chr6:29347545..29347556,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 7: | Line 7: | ||
|id=chr6:29347545..29347556,+ | |id=chr6:29347545..29347556,+ | ||
|ontology_enrichment_celltype=CL:0002319!2.24e-16!43;CL:0000221!8.99e-16!44;CL:0000133!8.99e-16!44;CL:0000540!1.76e-13!33;CL:0000047!1.76e-13!33;CL:0000031!1.76e-13!33;CL:0000404!1.76e-13!33;CL:0000117!1.94e-13!23;CL:0000337!1.94e-13!23;CL:0000055!1.10e-12!50;CL:0000393!3.14e-10!39;CL:0000211!3.14e-10!39;CL:0002321!5.74e-08!70;CL:0000220!5.74e-08!70 | |ontology_enrichment_celltype=CL:0002319!2.24e-16!43;CL:0000221!8.99e-16!44;CL:0000133!8.99e-16!44;CL:0000540!1.76e-13!33;CL:0000047!1.76e-13!33;CL:0000031!1.76e-13!33;CL:0000404!1.76e-13!33;CL:0000117!1.94e-13!23;CL:0000337!1.94e-13!23;CL:0000055!1.10e-12!50;CL:0000393!3.14e-10!39;CL:0000211!3.14e-10!39;CL:0002321!5.74e-08!70;CL:0000220!5.74e-08!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.85e-11,23;CL:0000337,1.85e-11,23;CL:0002610,2.91e-11,3;CL:0002614,4.61e-11,3;CL:0002319,5.27e-08,43;CL:0000540,6.60e-08,33;CL:0000047,6.60e-08,33;CL:0000031,6.60e-08,33;CL:0000404,6.60e-08,33;CL:0000221,8.22e-08,44;CL:0000133,8.22e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.39e-27!73;UBERON:0005743!7.39e-27!73;UBERON:0000073!1.09e-25!75;UBERON:0001016!1.09e-25!75;UBERON:0004121!2.90e-22!102;UBERON:0000924!2.90e-22!102;UBERON:0006601!2.90e-22!102;UBERON:0002346!3.37e-22!71;UBERON:0003075!3.37e-22!71;UBERON:0007284!3.37e-22!71;UBERON:0001049!2.21e-21!52;UBERON:0005068!2.21e-21!52;UBERON:0006241!2.21e-21!52;UBERON:0007135!2.21e-21!52;UBERON:0000033!4.61e-20!63;UBERON:0002616!2.71e-19!49;UBERON:0000955!1.14e-18!50;UBERON:0006238!1.14e-18!50;UBERON:0003056!2.23e-16!49;UBERON:0002020!5.11e-15!34;UBERON:0003080!6.12e-13!40;UBERON:0002780!1.74e-12!39;UBERON:0001890!1.74e-12!39;UBERON:0006240!1.74e-12!39;UBERON:0002791!3.39e-12!29;UBERON:0003528!3.39e-12!29;UBERON:0001893!3.39e-12!29;UBERON:0007811!3.62e-12!86;UBERON:0000153!1.89e-11!94;UBERON:0003076!6.57e-10!12;UBERON:0003057!6.57e-10!12;UBERON:0000956!2.00e-07!21;UBERON:0001869!2.00e-07!21;UBERON:0000203!2.00e-07!21;UBERON:0000025!5.88e-07!114;UBERON:0004733!7.65e-07!6;UBERON:0004732!7.65e-07!6;UBERON:0002028!7.65e-07!6;UBERON:0007277!7.65e-07!6;UBERON:0002298!9.07e-07!6 | |ontology_enrichment_uberon=UBERON:0001017!7.39e-27!73;UBERON:0005743!7.39e-27!73;UBERON:0000073!1.09e-25!75;UBERON:0001016!1.09e-25!75;UBERON:0004121!2.90e-22!102;UBERON:0000924!2.90e-22!102;UBERON:0006601!2.90e-22!102;UBERON:0002346!3.37e-22!71;UBERON:0003075!3.37e-22!71;UBERON:0007284!3.37e-22!71;UBERON:0001049!2.21e-21!52;UBERON:0005068!2.21e-21!52;UBERON:0006241!2.21e-21!52;UBERON:0007135!2.21e-21!52;UBERON:0000033!4.61e-20!63;UBERON:0002616!2.71e-19!49;UBERON:0000955!1.14e-18!50;UBERON:0006238!1.14e-18!50;UBERON:0003056!2.23e-16!49;UBERON:0002020!5.11e-15!34;UBERON:0003080!6.12e-13!40;UBERON:0002780!1.74e-12!39;UBERON:0001890!1.74e-12!39;UBERON:0006240!1.74e-12!39;UBERON:0002791!3.39e-12!29;UBERON:0003528!3.39e-12!29;UBERON:0001893!3.39e-12!29;UBERON:0007811!3.62e-12!86;UBERON:0000153!1.89e-11!94;UBERON:0003076!6.57e-10!12;UBERON:0003057!6.57e-10!12;UBERON:0000956!2.00e-07!21;UBERON:0001869!2.00e-07!21;UBERON:0000203!2.00e-07!21;UBERON:0000025!5.88e-07!114;UBERON:0004733!7.65e-07!6;UBERON:0004732!7.65e-07!6;UBERON:0002028!7.65e-07!6;UBERON:0007277!7.65e-07!6;UBERON:0002298!9.07e-07!6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,2.91e-11,3;UBERON:0002275,2.91e-11,3;UBERON:0002038,4.61e-11,3;UBERON:0009663,4.61e-11,3;UBERON:0009661,4.61e-11,3;UBERON:0000125,4.61e-11,3;UBERON:0002308,4.61e-11,3;UBERON:0001017,3.22e-09,73;UBERON:0001016,6.01e-09,75;UBERON:0002950,1.61e-08,4;UBERON:0001891,1.61e-08,4;UBERON:0009616,1.61e-08,4;UBERON:0010286,1.61e-08,4;UBERON:0000073,3.39e-08,54;UBERON:0004121,7.44e-07,95;UBERON:0000924,7.44e-07,95;UBERON:0006601,7.44e-07,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.872100625521786,0,0.972149495371417,0.839918529752175,0,0,0,0,0,0,0,0.606949382578793,1.05798195854407,0,0,0,0,0,0,0.599200221036809,1.15265491596466,0.622137673850866,1.21505344498522,0.630974884054146,0.856952953211411,0.883474163806454,0.122490799214954,0.575072826109418,0,0,4.08599481872601,2.4577045320999,0.395658863190582,0.731901148819277,0,1.67509799400829,0.56276261003168,1.98637722109853,0,0.854230084794618,0.372798891650601,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,1.28326477414318,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0.149790639404823,0.457500602818626,0.125654352112864,0.173824320192276,0.255715457330331,1.24672826735736,0.162241263067758,0.101839363850316,0,0,0,0.260240885925407,0,0.540186389416048,0.150704817835715,0.272145996605311,0.2562274405697,0.281105173679186,0.258703370739016,0.215567992932842,0.189106080167819,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0.134206418760372,0,0.205809224758569,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.703270119553219,0,0,0,0.390438744296638,0.646270193198397,0.238968797952552,0,0.283076530788832,0,0.292255857911312,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0.177340233642274,0,0,0.913394847343798,0.469343416127421,0,0,0.16488625294148,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.134864346384821,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358855426437903,0.335769232728157,0,0,0,0,0,1.12950368523413,1.38097570952153,0,0.171853182343688,0,0,0,0.900642406448441,0.906284817968409,0.51776031175182,0,0.399024873401031,0,0,0,0,0,0,0.320919209591815,0,0,0,0.0936415074698824,0.192075457214608,0,0,0,0,0,0,0,0.354951612318675,0.238436189947321,0.145346416632329,0.188218760830661,0.0846146078916765,0.182927972872773,0,0,0,0,0.197008964751127,0,0,0,0,0,0,0.191288332068843,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.872100625521786,0,0.972149495371417,0.839918529752175,0,0,0,0,0,0,0,0.606949382578793,1.05798195854407,0,0,0,0,0,0,0.599200221036809,1.15265491596466,0.622137673850866,1.21505344498522,0.630974884054146,0.856952953211411,0.883474163806454,0.122490799214954,0.575072826109418,0,0,4.08599481872601,2.4577045320999,0.395658863190582,0.731901148819277,0,1.67509799400829,0.56276261003168,1.98637722109853,0,0.854230084794618,0.372798891650601,0,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0,1.28326477414318,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0.149790639404823,0.457500602818626,0.125654352112864,0.173824320192276,0.255715457330331,1.24672826735736,0.162241263067758,0.101839363850316,0,0,0,0.260240885925407,0,0.540186389416048,0.150704817835715,0.272145996605311,0.2562274405697,0.281105173679186,0.258703370739016,0.215567992932842,0.189106080167819,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0.134206418760372,0,0.205809224758569,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.703270119553219,0,0,0,0.390438744296638,0.646270193198397,0.238968797952552,0,0.283076530788832,0,0.292255857911312,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0.177340233642274,0,0,0.913394847343798,0.469343416127421,0,0,0.16488625294148,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0.134864346384821,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358855426437903,0.335769232728157,0,0,0,0,0,1.12950368523413,1.38097570952153,0,0.171853182343688,0,0,0,0.900642406448441,0.906284817968409,0.51776031175182,0,0.399024873401031,0,0,0,0,0,0,0.320919209591815,0,0,0,0.0936415074698824,0.192075457214608,0,0,0,0,0,0,0,0.354951612318675,0.238436189947321,0.145346416632329,0.188218760830661,0.0846146078916765,0.182927972872773,0,0,0,0,0.197008964751127,0,0,0,0,0,0,0.191288332068843,0,0 | ||
|short_description=p3@Ccdc136 | |short_description=p3@Ccdc136 | ||
}} | }} |
Revision as of 17:49, 14 November 2012
Short description: | p3@Ccdc136 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ccdc136_5end |
Coexpression cluster: | NA |
Association with transcript: | 12bp_to_uc012ejb.1_5end |
EntrezGene: | Ccdc136 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.85e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.85e-11 | 23 |
raphe nuclei neuron | 2.91e-11 | 3 |
neuron of the substantia nigra | 4.61e-11 | 3 |
neural cell | 5.27e-08 | 43 |
neuron | 6.60e-08 | 33 |
neuronal stem cell | 6.60e-08 | 33 |
neuroblast | 6.60e-08 | 33 |
electrically signaling cell | 6.60e-08 | 33 |
ectodermal cell | 8.22e-08 | 44 |
neurectodermal cell | 8.22e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 2.91e-11 | 3 |
reticular formation | 2.91e-11 | 3 |
substantia nigra | 4.61e-11 | 3 |
telencephalic nucleus | 4.61e-11 | 3 |
midbrain nucleus | 4.61e-11 | 3 |
neural nucleus | 4.61e-11 | 3 |
nucleus of brain | 4.61e-11 | 3 |
central nervous system | 3.22e-09 | 73 |
nervous system | 6.01e-09 | 75 |
regional part of midbrain | 1.61e-08 | 4 |
midbrain | 1.61e-08 | 4 |
presumptive midbrain | 1.61e-08 | 4 |
midbrain neural tube | 1.61e-08 | 4 |
regional part of nervous system | 3.39e-08 | 54 |
ectoderm-derived structure | 7.44e-07 | 95 |
ectoderm | 7.44e-07 | 95 |
presumptive ectoderm | 7.44e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.