UBERON:0003076: Difference between revisions
From FANTOM5_SSTAR
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:03, 26 June 2012
| Name: | posterior neural tube | ||
|---|---|---|---|
| Xrefs: |
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| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:XAO_0000250-ZFA_0007037 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|
Children
| develops from: | UBERON:0002028 (hindbrain),UBERON:0002240 (spinal cord),UBERON:0007277 (presumptive hindbrain) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003076 (posterior neural tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.31e-117 | FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_8110f66f75e413153faa9ae1a8dddd88 | p1@SLC6A5 |
| 2.31e-117 | FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_8110f66f75e413153faa9ae1a8dddd88 | p1@SLC6A5 |
| 5.68e-99 | FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_bac084261ab1e1449ec9f3a44406efd1 | p9@TRPM3 |
| 5.68e-99 | FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_bac084261ab1e1449ec9f3a44406efd1 | p9@TRPM3 |
| 2.92e-96 | FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_31ecbbdb1a08ccaeb4414bce8ac2bdc2 | p@chr10:130489605..130489614, - |
| 2.92e-96 | FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_31ecbbdb1a08ccaeb4414bce8ac2bdc2 | p@chr10:130489605..130489614, - |
| 1.43e-91 | FFCP PHASE1:Hg19::chr2:69741832..69741847,-#_b113df6bb89da3dfc1f1d7dbcc76d7a1 | p@chr2:69741832..69741847, - |
| 1.43e-91 | FFCP PHASE2:Hg19::chr2:69741832..69741847,-#_b113df6bb89da3dfc1f1d7dbcc76d7a1 | p@chr2:69741832..69741847, - |
| 2.4e-88 | FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_58f3a308c603152e73ed996c228ac26a | p@chr2:72381655..72381673, - |
| 2.4e-88 | FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_58f3a308c603152e73ed996c228ac26a | p@chr2:72381655..72381673, - |
| 3.88e-87 | FFCP PHASE2:Hg19::chr5:151304948..151304984,-#_dc34375206c01d26361dbcdc5ca4c79d | p@chr5:151304948..151304984, - |
| 3.88e-87 | FFCP PHASE1:Hg19::chr5:151304948..151304984,-#_dc34375206c01d26361dbcdc5ca4c79d | p@chr5:151304948..151304984, - |
| 4.42e-84 | FFCP PHASE1:Hg19::chr5:151304337..151304405,-#_54a56ac4cca9d28cfd36bf43f2f06bb9 | p1@GLRA1 |
| 4.42e-84 | FFCP PHASE2:Hg19::chr5:151304337..151304405,-#_54a56ac4cca9d28cfd36bf43f2f06bb9 | p1@GLRA1 |
| 1.7e-81 | FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_a195c61946e88aaea48e28d2ed5a5b29 | p@chrX:106692537..106692551, + |
| 1.7e-81 | FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_a195c61946e88aaea48e28d2ed5a5b29 | p@chrX:106692537..106692551, + |
| 1.74e-81 | FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_610cec12f02e485464d0a25eb43c9195 | p@chr9:8779377..8779397, - |
| 1.74e-81 | FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_610cec12f02e485464d0a25eb43c9195 | p@chr9:8779377..8779397, - |
| 2.77e-80 | FFCP PHASE1:Hg19::chr9:128998376..128998387,-#_4b1a6889377eca72f58b573d53e6f529 | p@chr9:128998376..128998387, - |
| 2.77e-80 | FFCP PHASE2:Hg19::chr9:128998376..128998387,-#_4b1a6889377eca72f58b573d53e6f529 | p@chr9:128998376..128998387, - |
| 3.36e-79 | FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_78fa9fe6e06afe802a76a797617d1bac | p2@LOC100505835 |
| 3.36e-79 | FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_78fa9fe6e06afe802a76a797617d1bac | p2@LOC100505835 |
| 1.03e-78 | FFCP PHASE1:Hg19::chr2:25720324..25720333,-#_f01d2a42f972eed28b16b94301e2c24f | p15@DTNB |
| 1.03e-78 | FFCP PHASE2:Hg19::chr2:25720324..25720333,-#_f01d2a42f972eed28b16b94301e2c24f | p15@DTNB |
| 2.25e-76 | FFCP PHASE1:Hg19::chr17:42983316..42983326,-#_10eada30848adc447e57e756097a89c5 | p@chr17:42983316..42983326, - |
| 2.25e-76 | FFCP PHASE2:Hg19::chr17:42983316..42983326,-#_10eada30848adc447e57e756097a89c5 | p@chr17:42983316..42983326, - |
| 1.02e-75 | FFCP PHASE1:Hg19::chr17:10741337..10741344,-#_23a63580e3cc79a662b6ca02c11be501 | p3@PIRT |
| 1.02e-75 | FFCP PHASE2:Hg19::chr17:10741337..10741344,-#_23a63580e3cc79a662b6ca02c11be501 | p3@PIRT |
| 1.18e-75 | FFCP PHASE1:Hg19::chr17:11143564..11143575,+#_85e97d7dab417f6bfb3942cf488a5167 | p@chr17:11143564..11143575, + |
| 1.18e-75 | FFCP PHASE2:Hg19::chr17:11143564..11143575,+#_85e97d7dab417f6bfb3942cf488a5167 | p@chr17:11143564..11143575, + |
| 6.09e-73 | FFCP PHASE1:Hg19::chr2:25720352..25720388,-#_34e08afd2b0bb8b74519e28d23d237cb | p7@DTNB |
| 6.09e-73 | FFCP PHASE2:Hg19::chr2:25720352..25720388,-#_34e08afd2b0bb8b74519e28d23d237cb | p7@DTNB |
| 7.63e-73 | FFCP PHASE2:Hg19::chr1:62417735..62417748,+#_e3c49fc8f04d804be83c131d6ca7d1c5 | p9@INADL |
| 7.63e-73 | FFCP PHASE1:Hg19::chr1:62417735..62417748,+#_e3c49fc8f04d804be83c131d6ca7d1c5 | p9@INADL |
| 4.62e-72 | FFCP PHASE1:Hg19::chr6:138959885..138959912,-#_7e340094ab88f0bac1d88992b5fbb2bb | p@chr6:138959885..138959912, - |
| 4.62e-72 | FFCP PHASE2:Hg19::chr6:138959885..138959912,-#_7e340094ab88f0bac1d88992b5fbb2bb | p@chr6:138959885..138959912, - |
| 8.09e-70 | FFCP PHASE1:Hg19::chr16:290098..290109,+#_10e5247eebdbec24ea84c41894504a94 | p13@ITFG3 |
| 8.09e-70 | FFCP PHASE1:Hg19::chrX:106692569..106692585,+#_10e5247eebdbec24ea84c41894504a94 | p@chrX:106692569..106692585, + |
| 8.09e-70 | FFCP PHASE2:Hg19::chr16:290098..290109,+#_10e5247eebdbec24ea84c41894504a94 | p13@ITFG3 |
| 8.09e-70 | FFCP PHASE2:Hg19::chrX:106692569..106692585,+#_10e5247eebdbec24ea84c41894504a94 | p@chrX:106692569..106692585, + |
| 4.02e-69 | FFCP PHASE1:Hg19::chr12:41136144..41136158,+#_60f659fe2e5fd3725e9d70e6ee38fb07 | p14@CNTN1 |
| 4.02e-69 | FFCP PHASE2:Hg19::chr12:41136144..41136158,+#_60f659fe2e5fd3725e9d70e6ee38fb07 | p14@CNTN1 |
| 1.26e-67 | FFCP PHASE2:Hg19::chr5:151304987..151304998,-#_b7a088ae7c313da5c7e5e48997b83c4b | p@chr5:151304987..151304998, - |
| 1.26e-67 | FFCP PHASE1:Hg19::chr5:151304987..151304998,-#_b7a088ae7c313da5c7e5e48997b83c4b | p@chr5:151304987..151304998, - |
| 1.41e-67 | FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_f3585368d96485d53ea44b094215f675 | p3@CRTAM |
| 1.41e-67 | FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_f3585368d96485d53ea44b094215f675 | p@chr17:42993851..42993858, - |
| 1.41e-67 | FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_f3585368d96485d53ea44b094215f675 | p@chr17:42993851..42993858, - |
| 1.41e-67 | FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_f3585368d96485d53ea44b094215f675 | p3@CRTAM |
| 1.58e-67 | FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_952eb783ad84ef3e6f3a448f5bd5eae0 | p1@BARHL1 |
| 1.58e-67 | FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_952eb783ad84ef3e6f3a448f5bd5eae0 | p1@BARHL1 |
| 1.99e-67 | FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_b1d25eddb6f694f4868caf8419cca9ed | p@chr4:117675601..117675614, + |
| 1.99e-67 | FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_b1d25eddb6f694f4868caf8419cca9ed | p@chr4:117675601..117675614, + |
| 1.58e-66 | FFCP PHASE2:Hg19::chr6:132937878..132937891,-#_b4c054ae75403da3555fea5694365027 | p@chr6:132937878..132937891, - |
| 1.58e-66 | FFCP PHASE1:Hg19::chr6:132937878..132937891,-#_b4c054ae75403da3555fea5694365027 | p@chr6:132937878..132937891, - |
| 4.89e-66 | FFCP PHASE2:Hg19::chr10:130489635..130489656,-#_a7c1e348edcc38d2e006731e89b76df0 | p@chr10:130489635..130489656, - |
| 4.89e-66 | FFCP PHASE1:Hg19::chr10:130489635..130489656,-#_a7c1e348edcc38d2e006731e89b76df0 | p@chr10:130489635..130489656, - |
| 7.04e-66 | FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_d13166cea4b4421c335b8896643786f1 | p@chr6:152884391..152884402, - |
| 7.04e-66 | FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_d13166cea4b4421c335b8896643786f1 | p@chr6:152884391..152884402, - |
| 7.04e-66 | FFCP PHASE1:Hg19::chr11:31788840..31788847,-#_d13166cea4b4421c335b8896643786f1 | p@chr11:31788840..31788847, - |
| 7.04e-66 | FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_d13166cea4b4421c335b8896643786f1 | p@chr4:117873850..117873861, - |
| 7.04e-66 | FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_d13166cea4b4421c335b8896643786f1 | p@chr4:117873850..117873861, - |
| 7.04e-66 | FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_d13166cea4b4421c335b8896643786f1 | p@chr11:114146042..114146050, - |
| 7.04e-66 | FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_d13166cea4b4421c335b8896643786f1 | p@chr11:114146042..114146050, - |
| 7.04e-66 | FFCP PHASE2:Hg19::chr11:31788840..31788847,-#_d13166cea4b4421c335b8896643786f1 | p@chr11:31788840..31788847, - |
| 2.03e-65 | FFCP PHASE1:Hg19::chr11:17172327..17172344,-#_eeb60e14f9faa84fcaf78cb9d1cc3c9b | p@chr11:17172327..17172344, - |
| 2.03e-65 | FFCP PHASE2:Hg19::chr11:17172327..17172344,-#_eeb60e14f9faa84fcaf78cb9d1cc3c9b | p@chr11:17172327..17172344, - |
| 2.32e-65 | FFCP PHASE2:Hg19::chr17:26902537..26902548,-#_156ce3de0bcc8e6c4be429174364f2d1 | p3@ALDOC |
| 2.32e-65 | FFCP PHASE1:Hg19::chr17:26902537..26902548,-#_156ce3de0bcc8e6c4be429174364f2d1 | p3@ALDOC |
| 3.04e-65 | FFCP PHASE1:Hg19::chr16:290135..290154,+#_91d242b38e68f8f51c8f384f7e8b96c2 | p10@ITFG3 |
| 3.04e-65 | FFCP PHASE2:Hg19::chr16:290135..290154,+#_91d242b38e68f8f51c8f384f7e8b96c2 | p10@ITFG3 |
| 3.8e-64 | FFCP PHASE2:Hg19::chr18:77014816..77014819,-#_90dcd6c5b3f1ee0cf79c64f8c0d7add4 | p@chr18:77014816..77014819, - |
| 3.8e-64 | FFCP PHASE1:Hg19::chr18:77014816..77014819,-#_90dcd6c5b3f1ee0cf79c64f8c0d7add4 | p@chr18:77014816..77014819, - |
| 4.17e-64 | FFCP PHASE1:Hg19::chr14:62010202..62010207,-#_04a123859de5a769792db0af13e2592c | p@chr14:62010202..62010207, - |
| 4.17e-64 | FFCP PHASE2:Hg19::chr14:62010202..62010207,-#_04a123859de5a769792db0af13e2592c | p@chr14:62010202..62010207, - |
| 4.32e-64 | FFCP PHASE2:Hg19::chr5:136070614..136070625,+#_89d7b7ead0bc9ba6c62a138fa39594ec | p1@ENST00000502421 |
| 4.32e-64 | FFCP PHASE1:Hg19::chr5:136070614..136070625,+#_89d7b7ead0bc9ba6c62a138fa39594ec | p1@ENST00000502421 |
| 5.53e-64 | FFCP PHASE2:Hg19::chr2:179739649..179739660,-#_652896de7432e054359ef749d8461c35 | p@chr2:179739649..179739660, - |
| 5.53e-64 | FFCP PHASE1:Hg19::chr1:62417689..62417701,+#_652896de7432e054359ef749d8461c35 | p10@INADL |
| 5.53e-64 | FFCP PHASE1:Hg19::chr2:179739649..179739660,-#_652896de7432e054359ef749d8461c35 | p@chr2:179739649..179739660, - |
| 5.53e-64 | FFCP PHASE2:Hg19::chr1:62417689..62417701,+#_652896de7432e054359ef749d8461c35 | p10@INADL |
| 7.09e-64 | FFCP PHASE2:Hg19::chr15:79356984..79356998,-#_a22eb32513b699d14285872095511184 | p8@RASGRF1 |
| 7.09e-64 | FFCP PHASE1:Hg19::chr15:79356984..79356998,-#_a22eb32513b699d14285872095511184 | p8@RASGRF1 |
| 6.57e-63 | FFCP PHASE1:Hg19::chr2:25720404..25720435,-#_bd143f804a23665958753b0e4727deff | p8@DTNB |
| 6.57e-63 | FFCP PHASE2:Hg19::chr2:25720404..25720435,-#_bd143f804a23665958753b0e4727deff | p8@DTNB |
| 4.25e-62 | FFCP PHASE2:Hg19::chr5:72570629..72570651,-#_4b1b9b49b0eb1e34f20b218a3b8d37c6 | p@chr5:72570629..72570651, - |
| 4.25e-62 | FFCP PHASE1:Hg19::chr5:72570629..72570651,-#_4b1b9b49b0eb1e34f20b218a3b8d37c6 | p@chr5:72570629..72570651, - |
| 9.47e-62 | FFCP PHASE1:Hg19::chr17:68101098..68101109,+#_7d2f273edd874c0e0c920fd08909b8d0 | p6@KCNJ16 |
| 9.47e-62 | FFCP PHASE2:Hg19::chr17:68101098..68101109,+#_7d2f273edd874c0e0c920fd08909b8d0 | p6@KCNJ16 |
| 9.66e-62 | FFCP PHASE1:Hg19::chr5:20575812..20575831,-#_cf11ca39cde5af5eab2813c8f41bc22f | p4@CDH18 |
| 9.66e-62 | FFCP PHASE2:Hg19::chr5:20575812..20575831,-#_cf11ca39cde5af5eab2813c8f41bc22f | p4@CDH18 |
| 1.29e-60 | FFCP PHASE1:Mm9::chr7:57167425..57167443,+#_a71cd6314987cae49c0987eb96ba3412 | p@chr7:57167425..57167443, + |
| 1.29e-60 | FFCP PHASE2:Mm9::chr7:57167425..57167443,+#_a71cd6314987cae49c0987eb96ba3412 | p@chr7:57167425..57167443, + |
| 7.99e-60 | FFCP PHASE2:Hg19::chr1:90885681..90885693,-#_467b1ce60b90189098505d07bdfeadd4 | p@chr1:90885681..90885693, - |
| 7.99e-60 | FFCP PHASE1:Hg19::chr1:90885681..90885693,-#_467b1ce60b90189098505d07bdfeadd4 | p@chr1:90885681..90885693, - |
| 9.54e-60 | FFCP PHASE1:Hg19::chr12:26765770..26765792,-#_780de74a6611e5ead709903a33f3312e | p@chr12:26765770..26765792, - |
| 9.54e-60 | FFCP PHASE2:Hg19::chr6:158438086..158438095,+#_780de74a6611e5ead709903a33f3312e | p8@SYNJ2 |
| 9.54e-60 | FFCP PHASE2:Hg19::chr12:26765770..26765792,-#_780de74a6611e5ead709903a33f3312e | p@chr12:26765770..26765792, - |
| 9.54e-60 | FFCP PHASE1:Hg19::chr6:158438086..158438095,+#_780de74a6611e5ead709903a33f3312e | p8@SYNJ2 |
| 1.03e-59 | FFCP PHASE1:Hg19::chr17:43035276..43035287,+#_5c816b8a12f01a9b4f1ef62f5491726d | p@chr17:43035276..43035287, + |
| 1.03e-59 | FFCP PHASE2:Hg19::chr17:43035276..43035287,+#_5c816b8a12f01a9b4f1ef62f5491726d | p@chr17:43035276..43035287, + |
