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{{CL
{{CL
|id=CL:0002612
|alt_id=
|name=neuron of the ventral spinal cord
|namespace=cell
|def="A neuron of the ventral spinal cord." [GOC:tfm]
|xref=
|is_a=CL:0000117
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T07:46:03Z
|def="A neuron of the ventral spinal cord." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002612
|is_a=CL:0000117
|is_obsolete=
|located_in=
|located_in=
|name=neuron of the ventral spinal cord
|namespace=cell
|obo_creation_date=2011-03-06T07:46:03Z
|part_of=UBERON:0002257
|part_of=UBERON:0002257
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:30, 12 September 2014

Name:neuron of the ventral spinal cord
Namespace:cell
Definition:"A neuron of the ventral spinal cord." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T07:46:03Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000117(CNS neuron (sensu Vertebrata))
part_of:UBERON:0002257(ventral horn of spinal cord)



Children


derives from:FF:0000207 (mouse neuron of the ventral spinal cord sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
  • 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
  • 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)

Mouse (Mus musculus)

  • 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
  • 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
  • 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002612 (neuron of the ventral spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.33e-65FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_9645099b8561b1892ea2e0b639b67f99p@chr11:96148092..96148105, +
1.33e-65FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_9645099b8561b1892ea2e0b639b67f99p@chr11:96148092..96148105, +
2.21e-65FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_a926a64447ed98e921a572f9b6e21651p13@Grm5
2.21e-65FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_a926a64447ed98e921a572f9b6e21651p13@Grm5
3.28e-58FFCP PHASE1:Mm9::chr5:23665663..23665666,+#_4123cea3a0ff324fe57d0a0e7b2092f6p@chr5:23665663..23665666, +
3.28e-58FFCP PHASE2:Mm9::chr5:23665663..23665666,+#_4123cea3a0ff324fe57d0a0e7b2092f6p@chr5:23665663..23665666, +
4.9e-53FFCP PHASE2:Mm9::chr5:77527885..77527900,+#_737c8205c3e54d215ccdf99fed1abbfcp@chr5:77527885..77527900, +
4.9e-53FFCP PHASE1:Mm9::chr5:77527885..77527900,+#_737c8205c3e54d215ccdf99fed1abbfcp@chr5:77527885..77527900, +
7.35e-53FFCP PHASE2:Mm9::chr12:47797986..47798011,-#_d8abc0a6cf2e40a7f9f4831a29c42a92p@chr12:47797986..47798011, -
7.35e-53FFCP PHASE1:Mm9::chr12:47797986..47798011,-#_d8abc0a6cf2e40a7f9f4831a29c42a92p@chr12:47797986..47798011, -
1.1e-52FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_21d82753bf3a722d88144ce159e67018p3@Prrxl1
1.1e-52FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_21d82753bf3a722d88144ce159e67018p@chr18:84268738..84268777, -
1.1e-52FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_21d82753bf3a722d88144ce159e67018p3@Prrxl1
1.1e-52FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_21d82753bf3a722d88144ce159e67018p@chr18:84268738..84268777, -
1.65e-52FFCP PHASE2:Mm9::chr10:101630272..101630276,+#_4cff3db22ffd7cccec642c19009e8bb7p@chr10:101630272..101630276, +
1.65e-52FFCP PHASE1:Mm9::chr10:101630272..101630276,+#_4cff3db22ffd7cccec642c19009e8bb7p@chr10:101630272..101630276, +
1.65e-52FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_4cff3db22ffd7cccec642c19009e8bb7p@chr11:96608388..96608420, +
1.65e-52FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_4cff3db22ffd7cccec642c19009e8bb7p@chr11:96608388..96608420, +
1.66e-44FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_6b5934e1d7128030b5cae3820eb01854p6@Hoxb8
1.66e-44FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_6b5934e1d7128030b5cae3820eb01854p6@Hoxb8
1.17e-38FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_384137167319a57758855de456d76aa7p@chr2:74530108..74530131, +
1.17e-38FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_384137167319a57758855de456d76aa7p@chr2:74530108..74530131, +
2.09e-38FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_7af1a0069f64a3c1353ce8f402d75ebbp8@Hoxb6
2.09e-38FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_7af1a0069f64a3c1353ce8f402d75ebbp8@Hoxb6
3.73e-38FFCP PHASE1:Mm9::chr11:96132544..96132553,+#_589ca8f5be5c01f8f1002a212feeded9p6@Hoxb9
3.73e-38FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_589ca8f5be5c01f8f1002a212feeded9p5@Hoxd10
3.73e-38FFCP PHASE2:Mm9::chr11:96132544..96132553,+#_589ca8f5be5c01f8f1002a212feeded9p6@Hoxb9
3.73e-38FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_589ca8f5be5c01f8f1002a212feeded9p5@Hoxd10
2.8e-37FFCP PHASE2:Mm9::chr7:6659121..6659133,-#_83d6a7545b05fb9a4a05482ed15a852bp@chr7:6659121..6659133, -
2.8e-37FFCP PHASE1:Mm9::chr7:6659121..6659133,-#_83d6a7545b05fb9a4a05482ed15a852bp@chr7:6659121..6659133, -
3.67e-34FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_2c22e665a57d86c57a068b02c15324b2p4@Hoxb9
3.67e-34FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_2c22e665a57d86c57a068b02c15324b2p4@Hoxb9
7.89e-34FFCP PHASE1:Mm9::chr12:110843236..110843239,+#_0e22a6fac25fceb80768d4382639854ep@chr12:110843236..110843239, +
7.89e-34FFCP PHASE2:Mm9::chr12:110843236..110843239,+#_0e22a6fac25fceb80768d4382639854ep@chr12:110843236..110843239, +
5.97e-33FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_303c5885d0c71fbb62ecdfe65e08d2fdp6@Slc6a5
5.97e-33FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_303c5885d0c71fbb62ecdfe65e08d2fdp6@Slc6a5
1.16e-30FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_c7e2ffcfec4d06bc8cc53c884967e023p3@Tlx3
1.16e-30FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_c7e2ffcfec4d06bc8cc53c884967e023p3@Tlx3
1.83e-30FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_523c703df16ea8bab0671592c13fe3d4p@chr11:96146541..96146544, +
1.83e-30FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_523c703df16ea8bab0671592c13fe3d4p@chr11:96146541..96146544, +
4.03e-30FFCP PHASE2:Mm9::chr8:33760116..33760119,-#_156a22c9e00fea737a7c711754b066dbp@chr8:33760116..33760119, -
4.03e-30FFCP PHASE1:Mm9::chr8:33760116..33760119,-#_156a22c9e00fea737a7c711754b066dbp@chr8:33760116..33760119, -
5.64e-30FFCP PHASE1:Mm9::chr5:89666281..89666294,+#_70b68a16154d603dc837e7d80530472cp@chr5:89666281..89666294, +
5.64e-30FFCP PHASE2:Mm9::chr12:47886256..47886259,-#_70b68a16154d603dc837e7d80530472cp@chr12:47886256..47886259, -
5.64e-30FFCP PHASE1:Mm9::chr12:47886256..47886259,-#_70b68a16154d603dc837e7d80530472cp@chr12:47886256..47886259, -
5.64e-30FFCP PHASE2:Mm9::chr5:89666281..89666294,+#_70b68a16154d603dc837e7d80530472cp@chr5:89666281..89666294, +
5.7e-30FFCP PHASE2:Mm9::chr11:104171794..104171805,+#_4a8089440ee8d94ba1ef81a76299b3f6p@chr11:104171794..104171805, +
5.7e-30FFCP PHASE1:Mm9::chr11:104171794..104171805,+#_4a8089440ee8d94ba1ef81a76299b3f6p@chr11:104171794..104171805, +
7.89e-30FFCP PHASE1:Mm9::chr4:58340140..58340151,+#_7c2e4203e1367df234ed1d3384e3b7adp@chr4:58340140..58340151, +
7.89e-30FFCP PHASE2:Mm9::chr4:58340140..58340151,+#_7c2e4203e1367df234ed1d3384e3b7adp@chr4:58340140..58340151, +
1.4e-29FFCP PHASE2:Mm9::chr14:94197171..94197177,-#_ead2570d921b07e2d56dd110cd86c979p@chr14:94197171..94197177, -
1.4e-29FFCP PHASE1:Mm9::chr14:94197171..94197177,-#_ead2570d921b07e2d56dd110cd86c979p@chr14:94197171..94197177, -
1.4e-29FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_ead2570d921b07e2d56dd110cd86c979p1@Uts2
1.4e-29FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_ead2570d921b07e2d56dd110cd86c979p1@Uts2
1.54e-29FFCP PHASE1:Mm9::chr8:84578004..84578010,+#_f925e9ce637815351db2955e37790349p@chr8:84578004..84578010, +
1.54e-29FFCP PHASE2:Mm9::chr8:84578004..84578010,+#_f925e9ce637815351db2955e37790349p@chr8:84578004..84578010, +
1.11e-27FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_477bc43f8d4ba48d1d94e5b739901582p@chr2:70399563..70399583, +
1.11e-27FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_477bc43f8d4ba48d1d94e5b739901582p1@Gbx1
1.11e-27FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_477bc43f8d4ba48d1d94e5b739901582p1@Gbx1
1.11e-27FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_477bc43f8d4ba48d1d94e5b739901582p@chr2:70399563..70399583, +
2.06e-27FFCP PHASE1:Mm9::chrX:98516253..98516269,+#_8b8d3eddd67df4123caf6e91b0781be1p@chrX:98516253..98516269, +
2.06e-27FFCP PHASE2:Mm9::chrX:98516253..98516269,+#_8b8d3eddd67df4123caf6e91b0781be1p@chrX:98516253..98516269, +
3.1e-27FFCP PHASE1:Mm9::chr13:97841582..97841592,+#_b4089d3bb42c049d948728c7dde56df9p5@Fam169a
3.1e-27FFCP PHASE2:Mm9::chr7:144388046..144388053,-#_b4089d3bb42c049d948728c7dde56df9p@chr7:144388046..144388053, -
3.1e-27FFCP PHASE1:Mm9::chr7:144388046..144388053,-#_b4089d3bb42c049d948728c7dde56df9p@chr7:144388046..144388053, -
3.1e-27FFCP PHASE2:Mm9::chr13:97841582..97841592,+#_b4089d3bb42c049d948728c7dde56df9p5@Fam169a
4.66e-27FFCP PHASE1:Mm9::chr10:59862497..59862520,+#_cf15ac2eaba6e9c255f886cb74cdb7e8p2@Gm17455
4.66e-27FFCP PHASE2:Mm9::chr10:59862497..59862520,+#_cf15ac2eaba6e9c255f886cb74cdb7e8p2@Gm17455
6.99e-27FFCP PHASE1:Mm9::chr2:180625404..180625417,+#_4d25b7c5f413e26d8e4d9a12417cdfd1p@chr2:180625404..180625417, +
6.99e-27FFCP PHASE2:Mm9::chr2:180625404..180625417,+#_4d25b7c5f413e26d8e4d9a12417cdfd1p@chr2:180625404..180625417, +
8.55e-27FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_67a87400edd818e965d7eb348b787df5p3@Slc6a5
8.55e-27FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_67a87400edd818e965d7eb348b787df5p3@Slc6a5
2.12e-25FFCP PHASE1:Mm9::chr2:135885511..135885540,+#_c8f8e50b1c108e318dcdc7bad1725b02p@chr2:135885511..135885540, +
2.12e-25FFCP PHASE2:Mm9::chr2:135885511..135885540,+#_c8f8e50b1c108e318dcdc7bad1725b02p@chr2:135885511..135885540, +
2.56e-25FFCP PHASE1:Mm9::chr13:97419784..97419792,-#_2ad9f48a9168856cedbb2b0e274dff23p@chr13:97419784..97419792, -
2.56e-25FFCP PHASE2:Mm9::chr13:97419784..97419792,-#_2ad9f48a9168856cedbb2b0e274dff23p@chr13:97419784..97419792, -
2.56e-25FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_2ad9f48a9168856cedbb2b0e274dff23p12@6330527O06Rik
2.56e-25FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_2ad9f48a9168856cedbb2b0e274dff23p12@6330527O06Rik
9.4e-25FFCP PHASE2:Mm9::chr7:57165576..57165593,+#_668d6ffe2d5a3d030e3c9081acbbb85bp5@Slc6a5
9.4e-25FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_668d6ffe2d5a3d030e3c9081acbbb85bp1@Npff
9.4e-25FFCP PHASE1:Mm9::chr7:57165576..57165593,+#_668d6ffe2d5a3d030e3c9081acbbb85bp5@Slc6a5
9.4e-25FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_668d6ffe2d5a3d030e3c9081acbbb85bp1@Npff
1.13e-24FFCP PHASE2:Mm9::chr5:65522238..65522249,+#_cb58e0a672d58e0a65bdf374c513c6bap9@Klhl5
1.13e-24FFCP PHASE1:Mm9::chr5:65522238..65522249,+#_cb58e0a672d58e0a65bdf374c513c6bap9@Klhl5
1.74e-24FFCP PHASE2:Mm9::chr7:64495660..64495664,-#_ecea4d24a70bc281453e1d60a9712934p@chr7:64495660..64495664, -
1.74e-24FFCP PHASE1:Mm9::chr7:64495660..64495664,-#_ecea4d24a70bc281453e1d60a9712934p@chr7:64495660..64495664, -
2.28e-24FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_e3eb06d5e7cf06d16d8658b19de7887ap@chr2:70053872..70053879, +
2.28e-24FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_e3eb06d5e7cf06d16d8658b19de7887ap@chr2:70053872..70053879, +
2.36e-24FFCP PHASE1:Mm9::chr7:57165629..57165651,+#_8bf73bb44cdadff56302256450bb292ep4@Slc6a5
2.36e-24FFCP PHASE2:Mm9::chr7:57165629..57165651,+#_8bf73bb44cdadff56302256450bb292ep4@Slc6a5
2.99e-24FFCP PHASE1:Mm9::chr1:66486342..66486351,+#_ced56994f3f6766934efa6fb893f9429p@chr1:66486342..66486351, +
2.99e-24FFCP PHASE2:Mm9::chr1:66486342..66486351,+#_ced56994f3f6766934efa6fb893f9429p@chr1:66486342..66486351, +
2.99e-24FFCP PHASE1:Mm9::chr11:33103551..33103561,-#_ced56994f3f6766934efa6fb893f9429p4@Tlx3
2.99e-24FFCP PHASE2:Mm9::chr7:67121440..67121451,-#_ced56994f3f6766934efa6fb893f9429p@chr7:67121440..67121451, -
2.99e-24FFCP PHASE2:Mm9::chr11:33103551..33103561,-#_ced56994f3f6766934efa6fb893f9429p4@Tlx3
2.99e-24FFCP PHASE1:Mm9::chr7:67121440..67121451,-#_ced56994f3f6766934efa6fb893f9429p@chr7:67121440..67121451, -
3.91e-24FFCP PHASE1:Mm9::chr12:85023868..85023879,+#_1c503aa2de7d1797e98b576a202e7058p@chr12:85023868..85023879, +
3.91e-24FFCP PHASE2:Mm9::chr12:85023868..85023879,+#_1c503aa2de7d1797e98b576a202e7058p@chr12:85023868..85023879, +
4.08e-24FFCP PHASE2:Mm9::chr11:83696202..83696230,+#_e9dce254050c201ac4de6d85b45ce258p@chr11:83696202..83696230, +
4.08e-24FFCP PHASE1:Mm9::chr11:83696202..83696230,+#_e9dce254050c201ac4de6d85b45ce258p@chr11:83696202..83696230, +

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