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MCL coexpression mm9:2416: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002048!2.11e-10!14;UBERON:0000117!2.11e-10!14;UBERON:0000171!2.11e-10!14;UBERON:0000170!2.11e-10!14;UBERON:0005597!2.11e-10!14;UBERON:0000118!2.11e-10!14;UBERON:0000025!5.54e-08!114;UBERON:0002346!1.91e-07!64;UBERON:0003075!1.91e-07!64;UBERON:0007284!1.91e-07!64;UBERON:0004111!2.52e-07!122;UBERON:0002021!2.66e-07!10;UBERON:0000411!2.66e-07!10;UBERON:0001950!2.66e-07!10;UBERON:0000468!3.44e-07!333;UBERON:0005153!3.49e-07!17;UBERON:0010371!6.37e-07!73
}}
}}

Revision as of 18:26, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr5:13399325..13399382,+p2@Sema3a
Mm9::chr5:13399387..13399415,+p3@Sema3a
Mm9::chr5:13399495..13399519,+p4@Sema3a
Mm9::chr5:13399751..13399765,+p1@Sema3a


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
lung2.11e-1014
respiratory tube2.11e-1014
respiration organ2.11e-1014
pair of lungs2.11e-1014
lung primordium2.11e-1014
lung bud2.11e-1014
tube5.54e-08114
neurectoderm1.91e-0764
neural plate1.91e-0764
presumptive neural plate1.91e-0764
anatomical conduit2.52e-07122
occipital lobe2.66e-0710
visual cortex2.66e-0710
neocortex2.66e-0710
multi-cellular organism3.44e-07333
epithelial bud3.49e-0717
ecto-epithelium6.37e-0773


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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