FFCP PHASE1:Mm9::chr5:34892217..34892230,+: Difference between revisions
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|id=chr5:34892217..34892230,+ | |id=chr5:34892217..34892230,+ | ||
|ontology_enrichment_celltype=CL:0000540!2.95e-09!33;CL:0000047!2.95e-09!33;CL:0000031!2.95e-09!33;CL:0000404!2.95e-09!33;CL:0000393!2.54e-08!39;CL:0000211!2.54e-08!39;CL:0000117!3.20e-08!23;CL:0000337!3.20e-08!23;CL:0002319!2.65e-07!43;CL:0000221!3.26e-07!44;CL:0000133!3.26e-07!44 | |ontology_enrichment_celltype=CL:0000540!2.95e-09!33;CL:0000047!2.95e-09!33;CL:0000031!2.95e-09!33;CL:0000404!2.95e-09!33;CL:0000393!2.54e-08!39;CL:0000211!2.54e-08!39;CL:0000117!3.20e-08!23;CL:0000337!3.20e-08!23;CL:0002319!2.65e-07!43;CL:0000221!3.26e-07!44;CL:0000133!3.26e-07!44 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.17e-28,23;CL:0000337,9.17e-28,23;CL:0002609,1.30e-24,6;CL:0000540,1.21e-18,33;CL:0000047,1.21e-18,33;CL:0000031,1.21e-18,33;CL:0000404,1.21e-18,33;CL:0000393,2.07e-15,39;CL:0000211,2.07e-15,39;CL:0002319,9.34e-14,43;CL:0002608,1.98e-13,3;CL:0000221,2.17e-13,44;CL:0000133,2.17e-13,44;CL:0000120,5.46e-13,3;CL:0002321,1.57e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,4.55e-15,34;UBERON:0003528,1.87e-12,29;UBERON:0002791,1.87e-12,29;UBERON:0001893,1.87e-12,29;UBERON:0001017,8.02e-10,73;UBERON:0001954,8.92e-10,7;UBERON:0003022,8.92e-10,7;UBERON:0002421,8.92e-10,7;UBERON:0000349,8.92e-10,7;UBERON:0002600,8.92e-10,7;UBERON:0001016,1.74e-09,75;UBERON:0001049,4.16e-09,52;UBERON:0005068,4.16e-09,52;UBERON:0006241,4.16e-09,52;UBERON:0007135,4.16e-09,52;UBERON:0000956,7.57e-09,21;UBERON:0001869,7.57e-09,21;UBERON:0000203,7.57e-09,21;UBERON:0002780,7.90e-09,39;UBERON:0001890,7.90e-09,39;UBERON:0006240,7.90e-09,39;UBERON:0000073,1.09e-08,54;UBERON:0003080,1.45e-08,40;UBERON:0000369,1.14e-07,5;UBERON:0002435,1.14e-07,5;UBERON:0000204,1.14e-07,5;UBERON:0010082,1.14e-07,5;UBERON:0002616,3.14e-07,46;UBERON:0000955,4.85e-07,47;UBERON:0006238,4.85e-07,47;UBERON:0002346,5.35e-07,64;UBERON:0003075,5.35e-07,64;UBERON:0007284,5.35e-07,64;UBERON:0004121,6.70e-07,95;UBERON:0000924,6.70e-07,95;UBERON:0006601,6.70e-07,95 | |||
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| ||
|short_description=p4@Sh3bp2 | |short_description=p4@Sh3bp2 | ||
}} | }} |
Revision as of 19:52, 14 November 2012
Short description: | p4@Sh3bp2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sh3bp2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000118545, NM_001145859, uc008xco.2_5end |
EntrezGene: | Sh3bp2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.17e-28 | 23 |
neuroblast (sensu Vertebrata) | 9.17e-28 | 23 |
neuron of cerebral cortex | 1.30e-24 | 6 |
neuron | 1.21e-18 | 33 |
neuronal stem cell | 1.21e-18 | 33 |
neuroblast | 1.21e-18 | 33 |
electrically signaling cell | 1.21e-18 | 33 |
electrically responsive cell | 2.07e-15 | 39 |
electrically active cell | 2.07e-15 | 39 |
neural cell | 9.34e-14 | 43 |
hippocampal neuron | 1.98e-13 | 3 |
ectodermal cell | 2.17e-13 | 44 |
neurectodermal cell | 2.17e-13 | 44 |
granule cell | 5.46e-13 | 3 |
embryonic cell | 1.57e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
gray matter | 4.55e-15 | 34 |
brain grey matter | 1.87e-12 | 29 |
regional part of telencephalon | 1.87e-12 | 29 |
telencephalon | 1.87e-12 | 29 |
central nervous system | 8.02e-10 | 73 |
Ammon's horn | 8.92e-10 | 7 |
lobe parts of cerebral cortex | 8.92e-10 | 7 |
hippocampal formation | 8.92e-10 | 7 |
limbic system | 8.92e-10 | 7 |
limbic lobe | 8.92e-10 | 7 |
nervous system | 1.74e-09 | 75 |
neural tube | 4.16e-09 | 52 |
neural rod | 4.16e-09 | 52 |
future spinal cord | 4.16e-09 | 52 |
neural keel | 4.16e-09 | 52 |
cerebral cortex | 7.57e-09 | 21 |
cerebral hemisphere | 7.57e-09 | 21 |
pallium | 7.57e-09 | 21 |
regional part of forebrain | 7.90e-09 | 39 |
forebrain | 7.90e-09 | 39 |
future forebrain | 7.90e-09 | 39 |
regional part of nervous system | 1.09e-08 | 54 |
anterior neural tube | 1.45e-08 | 40 |
corpus striatum | 1.14e-07 | 5 |
striatum | 1.14e-07 | 5 |
ventral part of telencephalon | 1.14e-07 | 5 |
future corpus striatum | 1.14e-07 | 5 |
regional part of brain | 3.14e-07 | 46 |
brain | 4.85e-07 | 47 |
future brain | 4.85e-07 | 47 |
neurectoderm | 5.35e-07 | 64 |
neural plate | 5.35e-07 | 64 |
presumptive neural plate | 5.35e-07 | 64 |
ectoderm-derived structure | 6.70e-07 | 95 |
ectoderm | 6.70e-07 | 95 |
presumptive ectoderm | 6.70e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.