FFCP PHASE1:Mm9::chr5:31593725..31593738,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:31593725..31593738,+|id=chr5:31593725..31593738,+|ontology_enrichment_celltype=CL:0000063!1.48e-11!66;CL:0000066!2.37e-08!25;CL:0002563!2.38e-07!9;CL:0002251!2.38e-07!9;CL:0000838!2.84e-07!12;CL:0000223!5.90e-07!20;CL:0000988!5.99e-07!32;CL:0002032!5.99e-07!32;CL:0000037!5.99e-07!32;CL:0000566!5.99e-07!32;CL:0000837!5.99e-07!32;CL:0000144!6.23e-07!121;CL:0000012!6.23e-07!121|ontology_enrichment_celltype_v019_2=CL:0000791,1.68e-16,9;CL:0000789,1.68e-16,9;CL:0002420,1.68e-16,9;CL:0002419,1.68e-16,9;CL:0000790,1.68e-16,9;CL:0000838,8.17e-16,12;CL:0000542,1.71e-14,13;CL:0000051,1.71e-14,13;CL:0000624,9.84e-14,8;CL:0000084,2.59e-13,11;CL:0000827,2.59e-13,11;CL:0002031,7.76e-13,25;CL:0002563,5.10e-11,9;CL:0002251,5.10e-11,9;CL:0000738,9.21e-11,17;CL:0002087,9.21e-11,17;CL:0000066,1.04e-09,25;CL:0000075,1.18e-09,7;CL:0000988,1.51e-09,32;CL:0002032,1.51e-09,32;CL:0000037,1.51e-09,32;CL:0000837,1.51e-09,32;CL:0000034,2.82e-09,97;CL:0000893,1.18e-08,6;CL:0002489,1.18e-08,6;CL:0000898,1.18e-08,6;CL:0000809,1.18e-08,6;CL:0000810,1.18e-08,6;CL:0000895,1.18e-08,6;CL:0000808,1.18e-08,6;CL:0000894,1.18e-08,6;CL:0000806,1.18e-08,6;CL:0000807,1.18e-08,6;CL:0000805,1.18e-08,6;CL:0002425,1.18e-08,6;CL:0002436,1.18e-08,6;CL:0002427,1.18e-08,6;CL:0002428,1.18e-08,6;CL:0002429,1.18e-08,6;CL:0002433,1.18e-08,6;CL:0002431,1.18e-08,6;CL:0002432,1.18e-08,6;CL:0002320,1.28e-08,46;CL:0000134,1.28e-08,46;CL:0000223,3.99e-08,20;CL:0000723,5.12e-08,91;CL:0000048,5.12e-08,91;CL:0000239,1.38e-07,6;CL:0000677,1.38e-07,6;CL:0000584,1.38e-07,6;CL:0000219,5.95e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,2.22e-09,3;DOID:4045,2.22e-09,3;DOID:0050686,9.49e-08,6|ontology_enrichment_uberon=UBERON:0000485!1.15e-08!11;UBERON:0003350!2.38e-07!9;UBERON:0004808!2.38e-07!9;UBERON:0001277!2.38e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000485,2.19e-15,11;UBERON:0000490,6.14e-12,66;UBERON:0003350,5.10e-11,9;UBERON:0004808,5.10e-11,9;UBERON:0001277,5.10e-11,9;UBERON:0002384,1.28e-08,46;UBERON:0003929,1.37e-07,55;UBERON:0001242,1.93e-07,13;UBERON:0001262,1.93e-07,13;UBERON:0004786,1.93e-07,13|phase1_expression=2.40223270657191,1.74487703819681,1.36499771816861,2.41971369045464,2.50447864973174,0.671517087647559,0.700837921786577,7.618276083053,4.36445038670167,5.14941957908386,0.171217968225505,0.0797721589953364,8.21763503669787,5.24522414513984,0,0.404950534779652,0.699561878128147,3.78554598429885,3.15363197293199,0.84877930359606,0.17008658030214,0.0992909512008853,0.522399578277871,0,0,0.57423196411502,0.430761996159075,0,0,0,0,1.27006134691926,0,0,3.75507105676657,0.997407872150954,5.51257261908397,2.09265815368454,3.906676722619,3.14114246384279,63.5290007073495,8.19654581950135,1.45653105909346,0.125896817975577,0.405507724878058,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0,0,5.5368259999053,3.62681071005672,8.06625117941913,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0.127687338085188,0,0,0,0,0.837548997004143,0,0,0,0,0,0.151452386666368,0,7.24661221754194,0,0.679971333707751,0,1.94932925234301,0.448026887097336,0,0,0,0.35333957451034,1.40843419776681,0,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.45673551887624,0,0.593768556259299,0,0.304465478312141,0,0,0.117588707135705,0,0,0.144599356919912,0,0.161766849947409,0,0,0,0,0,0.255457055208591,0.958520996047362,0.599902730993408,0.762421362438388,0.149790639404823,0,0,0,0.255715457330331,0,0.324482526135515,0.101839363850316,0,0.252722758433675,0,0,0.229902104433473,0.180062129805349,0,0.0680364991513279,0.384341160854549,0.0937017245597288,0,0.215567992932842,0,0.175951124163949,0.219195732427575,0,0.348252166522167,0.205782136407943,0,0,0.51469581422943,0.568326998791185,0,0,0,0,0,0.154267112887378,0,0,0.116765342367169,0,0,0.0810688095458557,0.292399974850665,0,0,0,0.102904612379284,0,0,0,0,0,0.201683524623343,0,0.190225626112559,0,0,0,0,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0,0,0.203651327845314,0,0,0,0.147610147979602,0.156998727841375,0,1.1858105083486,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0.505157755894224,0,1.4473305640901,0.184753190166605,0.189491411770485,0.162964976442026,0.169745085775188,0.234690248288502,0,0,0,0,0.221464689648775,0,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0.315508219416257,0,0.215423397732799,0,0.222798674082394,0.283076530788832,0,0,0,0,0,0,0.325773918707152,0,0,0,0,0.565815239267694,0.590603785761546,0.307435147943927,0.516856586336442,0,0,0,0,0,0.680879211507576,0.36012218806262,0,0.214337035031592,0.177340233642274,0,0,0.608929898229199,0.23467170806371,0.42366414172764,0.220528398054962,0.16488625294148,0.161464426695906,0.180938774784468,0,0,0,0,0.170870880797853,0,0.185194527369712,0,0,0,1.5298058699447,1.6794174278839,0.414599921413271,0,0.158167996790568,0,0.108005340821801,0.209088296014469,0,0.134864346384821,0.165306911450672,0.26175594198403,0,0,0,0,0,0,0.258319646955462,0,0,0.2604087696879,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0.358053391334963,0,0,0.147689527174577,0.100966449948148,0.228620419965,0.201652370273681,0.194915761479505,0.288635524920988,0.350630706544707,0.226730383615211,0.221985953374065,0.0897138566094757,0.167884616364078,0,0.187682475451182,0,0,0,0,0,0,0,0,0.755393897389701,0,0,0,0.51776031175182,0.207574695168353,0.399024873401031,0.682934423016537,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0,0,0.17230640686684,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0.271608227691724,0,0,0.0985044823755635,0,0,0,0,0,0.429742108096597,0.191288332068843,0,0|short_description=p@chr5:31593725..31593738,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:31593725..31593738,+ | |||
|id=chr5:31593725..31593738,+ | |||
|ontology_enrichment_celltype=CL:0000063!1.48e-11!66;CL:0000066!2.37e-08!25;CL:0002563!2.38e-07!9;CL:0002251!2.38e-07!9;CL:0000838!2.84e-07!12;CL:0000223!5.90e-07!20;CL:0000988!5.99e-07!32;CL:0002032!5.99e-07!32;CL:0000037!5.99e-07!32;CL:0000566!5.99e-07!32;CL:0000837!5.99e-07!32;CL:0000144!6.23e-07!121;CL:0000012!6.23e-07!121 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.68e-16,9;CL:0000789,1.68e-16,9;CL:0002420,1.68e-16,9;CL:0002419,1.68e-16,9;CL:0000790,1.68e-16,9;CL:0000838,8.17e-16,12;CL:0000542,1.71e-14,13;CL:0000051,1.71e-14,13;CL:0000624,9.84e-14,8;CL:0000084,2.59e-13,11;CL:0000827,2.59e-13,11;CL:0002031,7.76e-13,25;CL:0002563,5.10e-11,9;CL:0002251,5.10e-11,9;CL:0000738,9.21e-11,17;CL:0002087,9.21e-11,17;CL:0000066,1.04e-09,25;CL:0000075,1.18e-09,7;CL:0000988,1.51e-09,32;CL:0002032,1.51e-09,32;CL:0000037,1.51e-09,32;CL:0000837,1.51e-09,32;CL:0000034,2.82e-09,97;CL:0000893,1.18e-08,6;CL:0002489,1.18e-08,6;CL:0000898,1.18e-08,6;CL:0000809,1.18e-08,6;CL:0000810,1.18e-08,6;CL:0000895,1.18e-08,6;CL:0000808,1.18e-08,6;CL:0000894,1.18e-08,6;CL:0000806,1.18e-08,6;CL:0000807,1.18e-08,6;CL:0000805,1.18e-08,6;CL:0002425,1.18e-08,6;CL:0002436,1.18e-08,6;CL:0002427,1.18e-08,6;CL:0002428,1.18e-08,6;CL:0002429,1.18e-08,6;CL:0002433,1.18e-08,6;CL:0002431,1.18e-08,6;CL:0002432,1.18e-08,6;CL:0002320,1.28e-08,46;CL:0000134,1.28e-08,46;CL:0000223,3.99e-08,20;CL:0000723,5.12e-08,91;CL:0000048,5.12e-08,91;CL:0000239,1.38e-07,6;CL:0000677,1.38e-07,6;CL:0000584,1.38e-07,6;CL:0000219,5.95e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,2.22e-09,3;DOID:4045,2.22e-09,3;DOID:0050686,9.49e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0000485!1.15e-08!11;UBERON:0003350!2.38e-07!9;UBERON:0004808!2.38e-07!9;UBERON:0001277!2.38e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000485,2.19e-15,11;UBERON:0000490,6.14e-12,66;UBERON:0003350,5.10e-11,9;UBERON:0004808,5.10e-11,9;UBERON:0001277,5.10e-11,9;UBERON:0002384,1.28e-08,46;UBERON:0003929,1.37e-07,55;UBERON:0001242,1.93e-07,13;UBERON:0001262,1.93e-07,13;UBERON:0004786,1.93e-07,13 | |||
|phase1_expression=2.40223270657191,1.74487703819681,1.36499771816861,2.41971369045464,2.50447864973174,0.671517087647559,0.700837921786577,7.618276083053,4.36445038670167,5.14941957908386,0.171217968225505,0.0797721589953364,8.21763503669787,5.24522414513984,0,0.404950534779652,0.699561878128147,3.78554598429885,3.15363197293199,0.84877930359606,0.17008658030214,0.0992909512008853,0.522399578277871,0,0,0.57423196411502,0.430761996159075,0,0,0,0,1.27006134691926,0,0,3.75507105676657,0.997407872150954,5.51257261908397,2.09265815368454,3.906676722619,3.14114246384279,63.5290007073495,8.19654581950135,1.45653105909346,0.125896817975577,0.405507724878058,0,0,0.218025156380447,0.219686182734472,0.194429899074283,0,0,5.5368259999053,3.62681071005672,8.06625117941913,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0.127687338085188,0,0,0,0,0.837548997004143,0,0,0,0,0,0.151452386666368,0,7.24661221754194,0,0.679971333707751,0,1.94932925234301,0.448026887097336,0,0,0,0.35333957451034,1.40843419776681,0,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.45673551887624,0,0.593768556259299,0,0.304465478312141,0,0,0.117588707135705,0,0,0.144599356919912,0,0.161766849947409,0,0,0,0,0,0.255457055208591,0.958520996047362,0.599902730993408,0.762421362438388,0.149790639404823,0,0,0,0.255715457330331,0,0.324482526135515,0.101839363850316,0,0.252722758433675,0,0,0.229902104433473,0.180062129805349,0,0.0680364991513279,0.384341160854549,0.0937017245597288,0,0.215567992932842,0,0.175951124163949,0.219195732427575,0,0.348252166522167,0.205782136407943,0,0,0.51469581422943,0.568326998791185,0,0,0,0,0,0.154267112887378,0,0,0.116765342367169,0,0,0.0810688095458557,0.292399974850665,0,0,0,0.102904612379284,0,0,0,0,0,0.201683524623343,0,0.190225626112559,0,0,0,0,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0,0,0.203651327845314,0,0,0,0.147610147979602,0.156998727841375,0,1.1858105083486,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0.505157755894224,0,1.4473305640901,0.184753190166605,0.189491411770485,0.162964976442026,0.169745085775188,0.234690248288502,0,0,0,0,0.221464689648775,0,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,0,0,0,0,0.315508219416257,0,0.215423397732799,0,0.222798674082394,0.283076530788832,0,0,0,0,0,0,0.325773918707152,0,0,0,0,0.565815239267694,0.590603785761546,0.307435147943927,0.516856586336442,0,0,0,0,0,0.680879211507576,0.36012218806262,0,0.214337035031592,0.177340233642274,0,0,0.608929898229199,0.23467170806371,0.42366414172764,0.220528398054962,0.16488625294148,0.161464426695906,0.180938774784468,0,0,0,0,0.170870880797853,0,0.185194527369712,0,0,0,1.5298058699447,1.6794174278839,0.414599921413271,0,0.158167996790568,0,0.108005340821801,0.209088296014469,0,0.134864346384821,0.165306911450672,0.26175594198403,0,0,0,0,0,0,0.258319646955462,0,0,0.2604087696879,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0.358053391334963,0,0,0.147689527174577,0.100966449948148,0.228620419965,0.201652370273681,0.194915761479505,0.288635524920988,0.350630706544707,0.226730383615211,0.221985953374065,0.0897138566094757,0.167884616364078,0,0.187682475451182,0,0,0,0,0,0,0,0,0.755393897389701,0,0,0,0.51776031175182,0.207574695168353,0.399024873401031,0.682934423016537,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0,0,0.17230640686684,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0.271608227691724,0,0,0.0985044823755635,0,0,0,0,0,0.429742108096597,0.191288332068843,0,0 | |||
|short_description=p@chr5:31593725..31593738,+ | |||
}} |
Revision as of 07:26, 14 September 2013
Short description: | p@chr5:31593725..31593738, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:31593725..31593738, + |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
simple columnar epithelium | 2.19e-15 | 11 |
unilaminar epithelium | 6.14e-12 | 66 |
epithelium of mucosa | 5.10e-11 | 9 |
gastrointestinal system epithelium | 5.10e-11 | 9 |
intestinal epithelium | 5.10e-11 | 9 |
connective tissue | 1.28e-08 | 46 |
gut epithelium | 1.37e-07 | 55 |
intestinal mucosa | 1.93e-07 | 13 |
wall of intestine | 1.93e-07 | 13 |
gastrointestinal system mucosa | 1.93e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 2.22e-09 | 3 |
muscle cancer | 2.22e-09 | 3 |
organ system cancer | 9.49e-08 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.