FFCP PHASE1:Mm9::chr18:35931142..35931212,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56550|HGNC=|MCL_coexpression_id=643|UniProt=P62838,Q3UT95,Q9D7F5|association_with_transcript=0bp_to_ENSMUST00000170693,NM_019912,uc012bbj.1_5end|description=CAGE_peak_3_at_Ube2d2_5end|id=chr18:35931142..35931212,+|ontology_enrichment_celltype=CL:0000221!3.27e-14!44;CL:0000133!3.27e-14!44;CL:0002319!1.21e-13!43;CL:0000117!1.03e-11!23;CL:0000337!1.03e-11!23;CL:0000540!2.47e-11!33;CL:0000047!2.47e-11!33;CL:0000031!2.47e-11!33;CL:0000404!2.47e-11!33;CL:0000055!3.21e-10!50;CL:0000393!9.41e-08!39;CL:0000211!9.41e-08!39|ontology_enrichment_celltype_v019_2=CL:0000221,3.25e-14,44;CL:0000133,3.25e-14,44;CL:0002319,1.20e-13,43;CL:0000117,1.02e-11,23;CL:0000337,1.02e-11,23;CL:0000540,2.45e-11,33;CL:0000047,2.45e-11,33;CL:0000031,2.45e-11,33;CL:0000404,2.45e-11,33;CL:0000393,1.07e-07,39;CL:0000211,1.07e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.15e-21!75;UBERON:0001016!6.15e-21!75;UBERON:0001017!7.99e-20!73;UBERON:0005743!7.99e-20!73;UBERON:0004121!3.11e-19!102;UBERON:0000924!3.11e-19!102;UBERON:0006601!3.11e-19!102;UBERON:0002346!6.51e-18!71;UBERON:0003075!6.51e-18!71;UBERON:0007284!6.51e-18!71;UBERON:0001049!9.24e-16!52;UBERON:0005068!9.24e-16!52;UBERON:0006241!9.24e-16!52;UBERON:0007135!9.24e-16!52;UBERON:0000033!5.86e-15!63;UBERON:0000955!1.34e-13!50;UBERON:0006238!1.34e-13!50;UBERON:0002616!4.12e-13!49;UBERON:0003056!1.59e-12!49;UBERON:0003080!2.66e-10!40;UBERON:0002020!7.37e-10!34;UBERON:0002780!7.74e-10!39;UBERON:0001890!7.74e-10!39;UBERON:0006240!7.74e-10!39;UBERON:0000153!9.83e-10!94;UBERON:0007811!6.47e-09!86;UBERON:0002791!1.58e-07!29;UBERON:0003528!1.58e-07!29;UBERON:0001893!1.58e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.07e-21,75;UBERON:0001017,7.89e-20,73;UBERON:0004121,1.08e-19,95;UBERON:0000924,1.08e-19,95;UBERON:0006601,1.08e-19,95;UBERON:0002346,7.36e-19,64;UBERON:0003075,7.36e-19,64;UBERON:0007284,7.36e-19,64;UBERON:0010314,2.19e-17,92;UBERON:0010371,4.01e-16,73;UBERON:0001049,9.15e-16,52;UBERON:0005068,9.15e-16,52;UBERON:0006241,9.15e-16,52;UBERON:0007135,9.15e-16,52;UBERON:0000073,1.14e-15,54;UBERON:0000955,3.87e-13,47;UBERON:0006238,3.87e-13,47;UBERON:0002616,1.19e-12,46;UBERON:0003056,1.58e-12,49;UBERON:0003080,2.64e-10,40;UBERON:0002020,7.33e-10,34;UBERON:0002780,7.70e-10,39;UBERON:0001890,7.70e-10,39;UBERON:0006240,7.70e-10,39;UBERON:0003528,1.58e-07,29;UBERON:0002791,1.58e-07,29;UBERON:0001893,1.58e-07,29|phase1_expression=3.52327463630547,0.348975407639361,0.454999239389536,0.60492842261366,1.50268718983904,0.671517087647559,0.467225281191051,1.80772652818207,2.67498572088167,1.63845168425395,3.25314139628459,1.43589886191606,4.10881751834894,2.62261207256992,2.99798785634096,3.44207954562704,2.09868563438444,3.78554598429885,3.42786084014347,5.51706547337439,3.48677489619386,2.97872853602656,1.82839852397255,0.95995453676044,0.45881856213434,1.14846392823004,1.7230479846363,0,0.190023419456374,0.504060259519861,0.221730510655305,0,0.61506478758457,0,0.577703239502549,2.1610503896604,3.67504841272264,8.78916424547506,4.6880120671428,8.89990364755457,2.94115744015507,6.83045484958446,7.2826552954673,0.629484089877886,1.11514624341466,0.734187008646726,7.82391344348039,8.06693078607652,5.4921545683618,5.44403717407994,3.63964696225943,10.062679505548,4.19456515144341,5.80289713609076,2.68875039313971,3.08711323243136,2.86533439938757,6.18806510732931,16.589949790487,10.5798195854407,12.0427966666174,5.42151251310611,4.4464739805557,7.64914759689189,3.9554654502679,9.9467216092454,5.69240209984969,8.06858441175265,15.3460626216547,13.5005938331691,13.6711224878398,10.5690864229407,8.61387309711293,15.4338407010842,13.9934387686625,8.27296907949019,4.40463523997555,7.53355294702608,7.21950706304344,18.0684214190366,15.3699241252048,16.1483144872596,5.02529398202486,7.31591393041184,7.63991238884051,10.0173719061047,8.11518580554887,14.5391567743734,10.3744884866462,8.91744409260069,3.18850937571846,6.0229671388697,2.719885334831,1.61910957491345,1.29955283489534,3.13618820968135,1.12355536105401,3.06774580640504,3.63700406444016,4.24007489412408,10.9857867425811,0,2.54805239706646,0,1.29894624606728,2.78695852022608,2.52762222507392,1.59857431606684,2.84831672011889,4.75014845007439,3.12273588179045,6.08930956624282,4.38169444786511,2.86373017049983,6.34979018532806,5.52933001850572,2.22475470960936,5.06097749219691,4.42305275974937,5.3383060482645,3.97514733228708,2.42437626567611,0,7.02673912827713,6.0739544975902,1.27728527604296,4.79260498023681,4.19931911695385,4.06624726633807,9.43681028250383,5.94750783664214,15.4554853098823,8.51739168942155,5.11430914660661,7.2725815595846,8.92326946872667,7.12875546952214,2.98576729464223,2.0217820674694,3.15662783829711,8.58794923553845,9.88579049063934,9.18316862007281,7.38453607395004,9.93332887609387,6.79002717509704,8.05834831213668,4.65666067330228,12.5029435901048,8.50977360755187,7.74184946321375,6.57587197282724,5.00485048606076,4.527278164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| ||
|EntrezGene=56550 | |||
|HGNC= | |||
|MCL_coexpression_id=643 | |||
|UniProt=P62838,Q3UT95,Q9D7F5 | |||
|association_with_transcript=0bp_to_ENSMUST00000170693,NM_019912,uc012bbj.1_5end | |||
|description=CAGE_peak_3_at_Ube2d2_5end | |||
|id=chr18:35931142..35931212,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.27e-14!44;CL:0000133!3.27e-14!44;CL:0002319!1.21e-13!43;CL:0000117!1.03e-11!23;CL:0000337!1.03e-11!23;CL:0000540!2.47e-11!33;CL:0000047!2.47e-11!33;CL:0000031!2.47e-11!33;CL:0000404!2.47e-11!33;CL:0000055!3.21e-10!50;CL:0000393!9.41e-08!39;CL:0000211!9.41e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.25e-14,44;CL:0000133,3.25e-14,44;CL:0002319,1.20e-13,43;CL:0000117,1.02e-11,23;CL:0000337,1.02e-11,23;CL:0000540,2.45e-11,33;CL:0000047,2.45e-11,33;CL:0000031,2.45e-11,33;CL:0000404,2.45e-11,33;CL:0000393,1.07e-07,39;CL:0000211,1.07e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.15e-21!75;UBERON:0001016!6.15e-21!75;UBERON:0001017!7.99e-20!73;UBERON:0005743!7.99e-20!73;UBERON:0004121!3.11e-19!102;UBERON:0000924!3.11e-19!102;UBERON:0006601!3.11e-19!102;UBERON:0002346!6.51e-18!71;UBERON:0003075!6.51e-18!71;UBERON:0007284!6.51e-18!71;UBERON:0001049!9.24e-16!52;UBERON:0005068!9.24e-16!52;UBERON:0006241!9.24e-16!52;UBERON:0007135!9.24e-16!52;UBERON:0000033!5.86e-15!63;UBERON:0000955!1.34e-13!50;UBERON:0006238!1.34e-13!50;UBERON:0002616!4.12e-13!49;UBERON:0003056!1.59e-12!49;UBERON:0003080!2.66e-10!40;UBERON:0002020!7.37e-10!34;UBERON:0002780!7.74e-10!39;UBERON:0001890!7.74e-10!39;UBERON:0006240!7.74e-10!39;UBERON:0000153!9.83e-10!94;UBERON:0007811!6.47e-09!86;UBERON:0002791!1.58e-07!29;UBERON:0003528!1.58e-07!29;UBERON:0001893!1.58e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.07e-21,75;UBERON:0001017,7.89e-20,73;UBERON:0004121,1.08e-19,95;UBERON:0000924,1.08e-19,95;UBERON:0006601,1.08e-19,95;UBERON:0002346,7.36e-19,64;UBERON:0003075,7.36e-19,64;UBERON:0007284,7.36e-19,64;UBERON:0010314,2.19e-17,92;UBERON:0010371,4.01e-16,73;UBERON:0001049,9.15e-16,52;UBERON:0005068,9.15e-16,52;UBERON:0006241,9.15e-16,52;UBERON:0007135,9.15e-16,52;UBERON:0000073,1.14e-15,54;UBERON:0000955,3.87e-13,47;UBERON:0006238,3.87e-13,47;UBERON:0002616,1.19e-12,46;UBERON:0003056,1.58e-12,49;UBERON:0003080,2.64e-10,40;UBERON:0002020,7.33e-10,34;UBERON:0002780,7.70e-10,39;UBERON:0001890,7.70e-10,39;UBERON:0006240,7.70e-10,39;UBERON:0003528,1.58e-07,29;UBERON:0002791,1.58e-07,29;UBERON:0001893,1.58e-07,29 | |||
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| |||
|short_description=p3@Ube2d2 | |||
}} |
Revision as of 16:01, 13 September 2013
Short description: | p3@Ube2d2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ube2d2_5end |
Coexpression cluster: | MCL_coexpression_mm9:643 |
Association with transcript: | 0bp_to_ENSMUST00000170693, NM_019912, uc012bbj.1_5end |
EntrezGene: | Ube2d2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.25e-14 | 44 |
neurectodermal cell | 3.25e-14 | 44 |
neural cell | 1.20e-13 | 43 |
CNS neuron (sensu Vertebrata) | 1.02e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.02e-11 | 23 |
neuron | 2.45e-11 | 33 |
neuronal stem cell | 2.45e-11 | 33 |
neuroblast | 2.45e-11 | 33 |
electrically signaling cell | 2.45e-11 | 33 |
electrically responsive cell | 1.07e-07 | 39 |
electrically active cell | 1.07e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.07e-21 | 75 |
central nervous system | 7.89e-20 | 73 |
ectoderm-derived structure | 1.08e-19 | 95 |
ectoderm | 1.08e-19 | 95 |
presumptive ectoderm | 1.08e-19 | 95 |
neurectoderm | 7.36e-19 | 64 |
neural plate | 7.36e-19 | 64 |
presumptive neural plate | 7.36e-19 | 64 |
structure with developmental contribution from neural crest | 2.19e-17 | 92 |
ecto-epithelium | 4.01e-16 | 73 |
neural tube | 9.15e-16 | 52 |
neural rod | 9.15e-16 | 52 |
future spinal cord | 9.15e-16 | 52 |
neural keel | 9.15e-16 | 52 |
regional part of nervous system | 1.14e-15 | 54 |
brain | 3.87e-13 | 47 |
future brain | 3.87e-13 | 47 |
regional part of brain | 1.19e-12 | 46 |
pre-chordal neural plate | 1.58e-12 | 49 |
anterior neural tube | 2.64e-10 | 40 |
gray matter | 7.33e-10 | 34 |
regional part of forebrain | 7.70e-10 | 39 |
forebrain | 7.70e-10 | 39 |
future forebrain | 7.70e-10 | 39 |
brain grey matter | 1.58e-07 | 29 |
regional part of telencephalon | 1.58e-07 | 29 |
telencephalon | 1.58e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.