FFCP PHASE1:Mm9::chr10:69457137..69457160,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1907|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:69457137..69457160,+|id=chr10:69457137..69457160,+|ontology_enrichment_celltype=CL:0000117!3.50e-27!23;CL:0000337!3.50e-27!23;CL:0000540!8.04e-17!33;CL:0000047!8.04e-17!33;CL:0000031!8.04e-17!33;CL:0000404!8.04e-17!33;CL:0000393!1.90e-14!39;CL:0000211!1.90e-14!39;CL:0002319!1.71e-12!43;CL:0000221!4.69e-12!44;CL:0000133!4.69e-12!44;CL:0000055!9.20e-11!50;CL:0002609!1.39e-09!6|ontology_enrichment_celltype_v019_2=CL:0000117,9.58e-38,23;CL:0000337,9.58e-38,23;CL:0000540,4.29e-26,33;CL:0000047,4.29e-26,33;CL:0000031,4.29e-26,33;CL:0000404,4.29e-26,33;CL:0002612,3.35e-23,3;CL:0002610,5.59e-23,3;CL:0000393,5.82e-22,39;CL:0000211,5.82e-22,39;CL:0002319,7.63e-20,43;CL:0000221,2.25e-19,44;CL:0000133,2.25e-19,44;CL:0002321,7.57e-12,70;CL:0000120,1.59e-10,3;CL:0000723,6.98e-09,91;CL:0000048,6.98e-09,91;CL:0000034,2.87e-08,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!4.73e-19!34;UBERON:0000073!1.59e-17!75;UBERON:0001016!1.59e-17!75;UBERON:0001017!3.53e-17!73;UBERON:0005743!3.53e-17!73;UBERON:0001049!6.06e-16!52;UBERON:0005068!6.06e-16!52;UBERON:0006241!6.06e-16!52;UBERON:0007135!6.06e-16!52;UBERON:0000955!1.78e-15!50;UBERON:0006238!1.78e-15!50;UBERON:0002791!6.79e-15!29;UBERON:0003528!6.79e-15!29;UBERON:0001893!6.79e-15!29;UBERON:0002616!1.45e-14!49;UBERON:0000033!1.67e-13!63;UBERON:0004121!3.43e-13!102;UBERON:0000924!3.43e-13!102;UBERON:0006601!3.43e-13!102;UBERON:0002346!4.80e-12!71;UBERON:0003075!4.80e-12!71;UBERON:0007284!4.80e-12!71;UBERON:0003080!1.54e-11!40;UBERON:0003056!3.83e-11!49;UBERON:0002780!7.46e-11!39;UBERON:0001890!7.46e-11!39;UBERON:0006240!7.46e-11!39;UBERON:0000956!7.02e-10!21;UBERON:0001869!7.02e-10!21;UBERON:0000203!7.02e-10!21;UBERON:0007811!5.66e-09!86;UBERON:0000153!1.71e-07!94;UBERON:0002619!2.64e-07!17;UBERON:0000025!3.55e-07!114;UBERON:0002240!9.72e-07!6;UBERON:0005174!9.72e-07!6;UBERON:0001137!9.72e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0002257,3.35e-23,3;UBERON:0004684,5.59e-23,3;UBERON:0002275,5.59e-23,3;UBERON:0001948,3.42e-14,5;UBERON:0002315,3.42e-14,5;UBERON:0002240,6.27e-12,6;UBERON:0005174,6.27e-12,6;UBERON:0001137,6.27e-12,6;UBERON:0001017,2.55e-11,73;UBERON:0001016,5.41e-11,75;UBERON:0000073,2.17e-10,54;UBERON:0004121,1.83e-08,95;UBERON:0000924,1.83e-08,95;UBERON:0006601,1.83e-08,95;UBERON:0002020,1.33e-07,34|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,1.5869729378161,1.26766280701236,0,0,0,0,0,0,0,1.55534418462716,1.35005938331691,0.420649922702764,0.285650984403804,0,0.857435594504678,0.958454710182364,0.919218786610021,1.10115880999389,4.59674417106676,5.68344173048101,0.923204014111357,1.64677758484337,0.52091337055676,0.279182999001381,0.56276261003168,0,3.83017161115768,1.85083185038834,1.86399445825301,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0.251308704225729,0,0.255715457330331,0,0.324482526135515,0,0,0,0,0,0,0,0,0.0680364991513279,0.2562274405697,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0.134206418760372,0,0.514523061896422,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0,0,0,0,0.407302655690628,0.193952487167626,0,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0.162135226775035,0,1.43768206527355,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0.163863314715738,0,0.144649058581512,0,0,0,0,0.321101179975584,0.234423373184406,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0.0603129249281559,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0.26175594198403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0.572895513439397,0,0,0,0.675022500231806,0.45032120322422,0.453142408984205,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114870937911227,0,0,0,0,0,0,0.177475806159338,0,0,0.0941093804153306,0,0,0.263069711437843,0,0,0.237270036248348,0,0,0,0,0,0,0,0,0,0|short_description=p@chr10:69457137..69457160,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1907 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:69457137..69457160,+ | |||
|id=chr10:69457137..69457160,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.50e-27!23;CL:0000337!3.50e-27!23;CL:0000540!8.04e-17!33;CL:0000047!8.04e-17!33;CL:0000031!8.04e-17!33;CL:0000404!8.04e-17!33;CL:0000393!1.90e-14!39;CL:0000211!1.90e-14!39;CL:0002319!1.71e-12!43;CL:0000221!4.69e-12!44;CL:0000133!4.69e-12!44;CL:0000055!9.20e-11!50;CL:0002609!1.39e-09!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.58e-38,23;CL:0000337,9.58e-38,23;CL:0000540,4.29e-26,33;CL:0000047,4.29e-26,33;CL:0000031,4.29e-26,33;CL:0000404,4.29e-26,33;CL:0002612,3.35e-23,3;CL:0002610,5.59e-23,3;CL:0000393,5.82e-22,39;CL:0000211,5.82e-22,39;CL:0002319,7.63e-20,43;CL:0000221,2.25e-19,44;CL:0000133,2.25e-19,44;CL:0002321,7.57e-12,70;CL:0000120,1.59e-10,3;CL:0000723,6.98e-09,91;CL:0000048,6.98e-09,91;CL:0000034,2.87e-08,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!4.73e-19!34;UBERON:0000073!1.59e-17!75;UBERON:0001016!1.59e-17!75;UBERON:0001017!3.53e-17!73;UBERON:0005743!3.53e-17!73;UBERON:0001049!6.06e-16!52;UBERON:0005068!6.06e-16!52;UBERON:0006241!6.06e-16!52;UBERON:0007135!6.06e-16!52;UBERON:0000955!1.78e-15!50;UBERON:0006238!1.78e-15!50;UBERON:0002791!6.79e-15!29;UBERON:0003528!6.79e-15!29;UBERON:0001893!6.79e-15!29;UBERON:0002616!1.45e-14!49;UBERON:0000033!1.67e-13!63;UBERON:0004121!3.43e-13!102;UBERON:0000924!3.43e-13!102;UBERON:0006601!3.43e-13!102;UBERON:0002346!4.80e-12!71;UBERON:0003075!4.80e-12!71;UBERON:0007284!4.80e-12!71;UBERON:0003080!1.54e-11!40;UBERON:0003056!3.83e-11!49;UBERON:0002780!7.46e-11!39;UBERON:0001890!7.46e-11!39;UBERON:0006240!7.46e-11!39;UBERON:0000956!7.02e-10!21;UBERON:0001869!7.02e-10!21;UBERON:0000203!7.02e-10!21;UBERON:0007811!5.66e-09!86;UBERON:0000153!1.71e-07!94;UBERON:0002619!2.64e-07!17;UBERON:0000025!3.55e-07!114;UBERON:0002240!9.72e-07!6;UBERON:0005174!9.72e-07!6;UBERON:0001137!9.72e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002257,3.35e-23,3;UBERON:0004684,5.59e-23,3;UBERON:0002275,5.59e-23,3;UBERON:0001948,3.42e-14,5;UBERON:0002315,3.42e-14,5;UBERON:0002240,6.27e-12,6;UBERON:0005174,6.27e-12,6;UBERON:0001137,6.27e-12,6;UBERON:0001017,2.55e-11,73;UBERON:0001016,5.41e-11,75;UBERON:0000073,2.17e-10,54;UBERON:0004121,1.83e-08,95;UBERON:0000924,1.83e-08,95;UBERON:0006601,1.83e-08,95;UBERON:0002020,1.33e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,1.5869729378161,1.26766280701236,0,0,0,0,0,0,0,1.55534418462716,1.35005938331691,0.420649922702764,0.285650984403804,0,0.857435594504678,0.958454710182364,0.919218786610021,1.10115880999389,4.59674417106676,5.68344173048101,0.923204014111357,1.64677758484337,0.52091337055676,0.279182999001381,0.56276261003168,0,3.83017161115768,1.85083185038834,1.86399445825301,0,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0.251308704225729,0,0.255715457330331,0,0.324482526135515,0,0,0,0,0,0,0,0,0.0680364991513279,0.2562274405697,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0.134206418760372,0,0.514523061896422,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0,0,0,0,0.407302655690628,0.193952487167626,0,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0.162135226775035,0,1.43768206527355,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0.163863314715738,0,0.144649058581512,0,0,0,0,0.321101179975584,0.234423373184406,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0.0603129249281559,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0.26175594198403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0.572895513439397,0,0,0,0.675022500231806,0.45032120322422,0.453142408984205,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114870937911227,0,0,0,0,0,0,0.177475806159338,0,0,0.0941093804153306,0,0,0.263069711437843,0,0,0.237270036248348,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr10:69457137..69457160,+ | |||
}} |
Revision as of 17:16, 12 September 2013
Short description: | p@chr10:69457137..69457160, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:69457137..69457160, + |
Coexpression cluster: | MCL_coexpression_mm9:1907 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.58e-38 | 23 |
neuroblast (sensu Vertebrata) | 9.58e-38 | 23 |
neuron | 4.29e-26 | 33 |
neuronal stem cell | 4.29e-26 | 33 |
neuroblast | 4.29e-26 | 33 |
electrically signaling cell | 4.29e-26 | 33 |
neuron of the ventral spinal cord | 3.35e-23 | 3 |
raphe nuclei neuron | 5.59e-23 | 3 |
electrically responsive cell | 5.82e-22 | 39 |
electrically active cell | 5.82e-22 | 39 |
neural cell | 7.63e-20 | 43 |
ectodermal cell | 2.25e-19 | 44 |
neurectodermal cell | 2.25e-19 | 44 |
embryonic cell | 7.57e-12 | 70 |
granule cell | 1.59e-10 | 3 |
somatic stem cell | 6.98e-09 | 91 |
multi fate stem cell | 6.98e-09 | 91 |
stem cell | 2.87e-08 | 97 |
Ontology term | p-value | n |
---|---|---|
ventral horn of spinal cord | 3.35e-23 | 3 |
raphe nuclei | 5.59e-23 | 3 |
reticular formation | 5.59e-23 | 3 |
regional part of spinal cord | 3.42e-14 | 5 |
gray matter of spinal cord | 3.42e-14 | 5 |
spinal cord | 6.27e-12 | 6 |
dorsal region element | 6.27e-12 | 6 |
dorsum | 6.27e-12 | 6 |
central nervous system | 2.55e-11 | 73 |
nervous system | 5.41e-11 | 75 |
regional part of nervous system | 2.17e-10 | 54 |
ectoderm-derived structure | 1.83e-08 | 95 |
ectoderm | 1.83e-08 | 95 |
presumptive ectoderm | 1.83e-08 | 95 |
gray matter | 1.33e-07 | 34 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.