Personal tools

FFCP PHASE1:Mm9::chr13:29045296..29045307,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{FFCP
{{FFCP|EntrezGene=20677|HGNC=|MCL_coexpression_id=76|UniProt=Q06831|association_with_transcript=243bp_to_NM_009238,uc007pyk.1_5end|description=CAGE_peak_8_at_Sox4_5end|id=chr13:29045296..29045307,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002609,1.02e-40,6;CL:0002608,1.58e-20,3;CL:0000117,2.82e-18,23;CL:0000337,2.82e-18,23;CL:0000540,1.53e-12,33;CL:0000047,1.53e-12,33;CL:0000031,1.53e-12,33;CL:0000404,1.53e-12,33;CL:0000393,1.66e-10,39;CL:0000211,1.66e-10,39;CL:0000120,7.57e-10,3;CL:0002319,1.84e-09,43;CL:0000221,3.13e-09,44;CL:0000133,3.13e-09,44;CL:0002321,5.66e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000956!1.49e-07!21;UBERON:0001869!1.49e-07!21;UBERON:0000203!1.49e-07!21;UBERON:0002791!3.29e-07!29;UBERON:0003528!3.29e-07!29;UBERON:0001893!3.29e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001954,8.33e-16,7;UBERON:0003022,8.33e-16,7;UBERON:0002421,8.33e-16,7;UBERON:0000349,8.33e-16,7;UBERON:0002600,8.33e-16,7;UBERON:0000956,1.21e-15,21;UBERON:0001869,1.21e-15,21;UBERON:0000203,1.21e-15,21;UBERON:0003528,1.64e-14,29;UBERON:0002791,1.64e-14,29;UBERON:0001893,1.64e-14,29;UBERON:0002020,2.80e-12,34;UBERON:0002780,1.29e-10,39;UBERON:0001890,1.29e-10,39;UBERON:0006240,1.29e-10,39;UBERON:0003080,2.48e-10,40;UBERON:0002616,6.90e-09,46;UBERON:0000955,1.11e-08,47;UBERON:0006238,1.11e-08,47;UBERON:0001017,2.23e-08,73;UBERON:0003056,2.69e-08,49;UBERON:0001153,3.50e-08,1;UBERON:0001045,3.50e-08,1;UBERON:0001016,4.00e-08,75;UBERON:0001049,8.96e-08,52;UBERON:0005068,8.96e-08,52;UBERON:0006241,8.96e-08,52;UBERON:0007135,8.96e-08,52;UBERON:0004121,1.36e-07,95;UBERON:0000924,1.36e-07,95;UBERON:0006601,1.36e-07,95;UBERON:0000073,1.86e-07,54;UBERON:0010371,9.64e-07,73|phase1_expression=0.320297694209588,0,0.454999239389536,0,0,0,0.233612640595526,0,0,0.234064526321993,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0.629484089877886,0.811015449756117,0.917733760808408,0,0.218025156380447,0.219686182734472,0,0,0,0.167782606057736,0,0,0.257259436035947,0,0.515672092277442,0.809265843438391,1.05798195854407,1.90149421051854,0,0,0,0,0,0.299600110518405,0,2.69592992002042,4.59020190327748,5.04779907243317,0,0.220868540951614,1.71487118900936,1.62937300731002,1.83843757322004,0,0,0.153606533256243,0.395658863190582,0.457438218012048,0.52091337055676,0,0,0.15279824777681,0,0.284743361598206,0.372798891650601,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0.14084341977668,1.28326477414318,0,0,0.432982082022428,0,0.505524445014783,0.11418387971906,0,0.29688427812965,0,0.304465478312141,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0.161766849947409,0.441683036920787,0,1.86391761218122,0,0,0,0,0,0.635351135365324,0.149790639404823,0,1.7591609295801,0.173824320192276,0.511430914660661,0,0.486723789203273,0.611036183101898,0,0.505445516867349,0.420883711772948,0.130120442962704,0.229902104433473,0.180062129805349,0,0.340182495756639,0.12811372028485,0.0937017245597288,0,0,0.189106080167819,0.175951124163949,0,0.556094498451196,0,0.205782136407943,0,0,0.772043721344145,0,0,0.469052119962192,0,0.23674473558521,0,0.154267112887378,0,0,0.350296027101508,0.658239399653922,0.164167464079095,0.324275238183423,0.292399974850665,0.658650345873152,0,0.210289948564127,5.55684906848136,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0.199141273254367,0.379335801906163,0.228497025219458,0,0,0,0.420814919341911,0.252946148497029,0,0.627994911365499,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0.167506257441816,0,0.780534591431195,0.315270288212382,0.221464689648775,0,0,0.690739927463582,0.433947175744535,0,0,0.491764273019036,0.275936746304732,0,0,0.491804836130026,0.252470927204373,0,0,0,0.238968797952552,0.222798674082394,0.283076530788832,0,0.292255857911312,0,0.321321316421807,0.141940085208269,0.35613120733451,0.325773918707152,0.164970122972535,0,0,0,0.377210159511796,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0,0,0,0.680879211507576,0.36012218806262,0.129358683782755,0,0.177340233642274,0.535106452806212,0,0,0,0.42366414172764,0.220528398054962,0.32977250588296,0.322928853391811,0.542816324353403,0.835606408021955,1.80554989719567,0.291480836629851,0.18542530201051,0.170870880797853,0.412773735926445,0,0,0.136694227721025,0,0.339956859987711,0.139951452323658,0.276399947608848,0,0.316335993581135,0.203319467126849,0.108005340821801,0.209088296014469,0,0.134864346384821,0.165306911450672,0,0.129614973291793,0,0,0,0,0.194451188344048,0,0,0.117357238645754,0.2604087696879,0.419437377702843,0,0.288030006257865,0.316011120628178,0.405450430580328,0.205421914329655,0.389762468933385,0.358053391334963,0,0.120195449519969,0,0.201932899896295,0.457240839929999,0,0.194915761479505,0.0962118416403295,0.233753804363138,0.226730383615211,0,0,0.167884616364078,0.772758376128762,0.187682475451182,0.36630324853453,0.214368379079066,0.501572104035363,0.564751842617067,0.460325236507177,0.572895513439397,0.515559547031063,0.685082519770642,0,0.675022500231806,0,0.906284817968409,0.51776031175182,0,0,0.341467211508268,0.243106717068294,0,0.551530525350042,0.222246727801615,0.206035057238894,0,0.252697211763798,0.25347929989024,0.377252682772152,0.0936415074698824,0.192075457214608,0.229741875822453,0.476293691283074,0.347652977834566,0.192909220463705,0.412085900803307,0,0.342869252385415,0.354951612318675,0,0.290692833264657,0.188218760830661,0.25384382367503,0.73171189149109,0.263069711437843,0.271608227691724,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0.499621155875892,0.233931608445408,0.214871054048298,0.57386499620653,0.220591419119515,0|short_description=p8@Sox4}}
|EntrezGene=20677
|HGNC=
|MCL_coexpression_id=76
|UniProt=Q06831
|association_with_transcript=243bp_to_NM_009238,uc007pyk.1_5end
|description=CAGE_peak_8_at_Sox4_5end
|id=chr13:29045296..29045307,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=CL:0002609,1.02e-40,6;CL:0002608,1.58e-20,3;CL:0000117,2.82e-18,23;CL:0000337,2.82e-18,23;CL:0000540,1.53e-12,33;CL:0000047,1.53e-12,33;CL:0000031,1.53e-12,33;CL:0000404,1.53e-12,33;CL:0000393,1.66e-10,39;CL:0000211,1.66e-10,39;CL:0000120,7.57e-10,3;CL:0002319,1.84e-09,43;CL:0000221,3.13e-09,44;CL:0000133,3.13e-09,44;CL:0002321,5.66e-07,70
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0000956!1.49e-07!21;UBERON:0001869!1.49e-07!21;UBERON:0000203!1.49e-07!21;UBERON:0002791!3.29e-07!29;UBERON:0003528!3.29e-07!29;UBERON:0001893!3.29e-07!29
|ontology_enrichment_uberon_v019_2=UBERON:0001954,8.33e-16,7;UBERON:0003022,8.33e-16,7;UBERON:0002421,8.33e-16,7;UBERON:0000349,8.33e-16,7;UBERON:0002600,8.33e-16,7;UBERON:0000956,1.21e-15,21;UBERON:0001869,1.21e-15,21;UBERON:0000203,1.21e-15,21;UBERON:0003528,1.64e-14,29;UBERON:0002791,1.64e-14,29;UBERON:0001893,1.64e-14,29;UBERON:0002020,2.80e-12,34;UBERON:0002780,1.29e-10,39;UBERON:0001890,1.29e-10,39;UBERON:0006240,1.29e-10,39;UBERON:0003080,2.48e-10,40;UBERON:0002616,6.90e-09,46;UBERON:0000955,1.11e-08,47;UBERON:0006238,1.11e-08,47;UBERON:0001017,2.23e-08,73;UBERON:0003056,2.69e-08,49;UBERON:0001153,3.50e-08,1;UBERON:0001045,3.50e-08,1;UBERON:0001016,4.00e-08,75;UBERON:0001049,8.96e-08,52;UBERON:0005068,8.96e-08,52;UBERON:0006241,8.96e-08,52;UBERON:0007135,8.96e-08,52;UBERON:0004121,1.36e-07,95;UBERON:0000924,1.36e-07,95;UBERON:0006601,1.36e-07,95;UBERON:0000073,1.86e-07,54;UBERON:0010371,9.64e-07,73
|phase1_expression=0.320297694209588,0,0.454999239389536,0,0,0,0.233612640595526,0,0,0.234064526321993,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0.629484089877886,0.811015449756117,0.917733760808408,0,0.218025156380447,0.219686182734472,0,0,0,0.167782606057736,0,0,0.257259436035947,0,0.515672092277442,0.809265843438391,1.05798195854407,1.90149421051854,0,0,0,0,0,0.299600110518405,0,2.69592992002042,4.59020190327748,5.04779907243317,0,0.220868540951614,1.71487118900936,1.62937300731002,1.83843757322004,0,0,0.153606533256243,0.395658863190582,0.457438218012048,0.52091337055676,0,0,0.15279824777681,0,0.284743361598206,0.372798891650601,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0.14084341977668,1.28326477414318,0,0,0.432982082022428,0,0.505524445014783,0.11418387971906,0,0.29688427812965,0,0.304465478312141,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0.161766849947409,0.441683036920787,0,1.86391761218122,0,0,0,0,0,0.635351135365324,0.149790639404823,0,1.7591609295801,0.173824320192276,0.511430914660661,0,0.486723789203273,0.611036183101898,0,0.505445516867349,0.420883711772948,0.130120442962704,0.229902104433473,0.180062129805349,0,0.340182495756639,0.12811372028485,0.0937017245597288,0,0,0.189106080167819,0.175951124163949,0,0.556094498451196,0,0.205782136407943,0,0,0.772043721344145,0,0,0.469052119962192,0,0.23674473558521,0,0.154267112887378,0,0,0.350296027101508,0.658239399653922,0.164167464079095,0.324275238183423,0.292399974850665,0.658650345873152,0,0.210289948564127,5.55684906848136,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0.199141273254367,0.379335801906163,0.228497025219458,0,0,0,0.420814919341911,0.252946148497029,0,0.627994911365499,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0.167506257441816,0,0.780534591431195,0.315270288212382,0.221464689648775,0,0,0.690739927463582,0.433947175744535,0,0,0.491764273019036,0.275936746304732,0,0,0.491804836130026,0.252470927204373,0,0,0,0.238968797952552,0.222798674082394,0.283076530788832,0,0.292255857911312,0,0.321321316421807,0.141940085208269,0.35613120733451,0.325773918707152,0.164970122972535,0,0,0,0.377210159511796,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0,0,0,0.680879211507576,0.36012218806262,0.129358683782755,0,0.177340233642274,0.535106452806212,0,0,0,0.42366414172764,0.220528398054962,0.32977250588296,0.322928853391811,0.542816324353403,0.835606408021955,1.80554989719567,0.291480836629851,0.18542530201051,0.170870880797853,0.412773735926445,0,0,0.136694227721025,0,0.339956859987711,0.139951452323658,0.276399947608848,0,0.316335993581135,0.203319467126849,0.108005340821801,0.209088296014469,0,0.134864346384821,0.165306911450672,0,0.129614973291793,0,0,0,0,0.194451188344048,0,0,0.117357238645754,0.2604087696879,0.419437377702843,0,0.288030006257865,0.316011120628178,0.405450430580328,0.205421914329655,0.389762468933385,0.358053391334963,0,0.120195449519969,0,0.201932899896295,0.457240839929999,0,0.194915761479505,0.0962118416403295,0.233753804363138,0.226730383615211,0,0,0.167884616364078,0.772758376128762,0.187682475451182,0.36630324853453,0.214368379079066,0.501572104035363,0.564751842617067,0.460325236507177,0.572895513439397,0.515559547031063,0.685082519770642,0,0.675022500231806,0,0.906284817968409,0.51776031175182,0,0,0.341467211508268,0.243106717068294,0,0.551530525350042,0.222246727801615,0.206035057238894,0,0.252697211763798,0.25347929989024,0.377252682772152,0.0936415074698824,0.192075457214608,0.229741875822453,0.476293691283074,0.347652977834566,0.192909220463705,0.412085900803307,0,0.342869252385415,0.354951612318675,0,0.290692833264657,0.188218760830661,0.25384382367503,0.73171189149109,0.263069711437843,0.271608227691724,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0.499621155875892,0.233931608445408,0.214871054048298,0.57386499620653,0.220591419119515,0
|short_description=p8@Sox4
}}

Revision as of 00:18, 13 September 2013

Short description:p8@Sox4
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_8_at_Sox4_5end
Coexpression cluster:MCL_coexpression_mm9:76
Association with transcript: 243bp_to_NM_009238, uc007pyk.1_5end
EntrezGene:Sox4
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p8@Sox4

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.32
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.45
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.23
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.23
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.17
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.09
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.26
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.22
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.29
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.17
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.63
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.81
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.92
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.22
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.22
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.17
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.26
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.52
Mouse Granule cells, donor1.CNhs12131.11713-123C30.81
Mouse Granule cells, donor2.CNhs12357.11731-123E31.06
Mouse Granule cells, donor3.CNhs12108.11636-122C71.90
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.30
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D52.70
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F54.59
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D95.05
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F10.00
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D50.22
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D21.71
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F21.63
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D61.84
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F30.00
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.15
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.40
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F40.46
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D80.52
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.00
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E50.00
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.15
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D60.00
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F60.28
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E10.37
Mouse Schwann, donor1.CNhs12507.11728-123D90.15
Mouse Schwann, donor2.CNhs12573.11746-123F90.15
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.17
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.26
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.14
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H11.28
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.43
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.51
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.11
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.30
adrenal gland, embryo E14.CNhs11038.406-44C50.00
adrenal gland, embryo E16.CNhs11004.1254-43D60.30
adrenal gland, embryo E17.CNhs11043.1263-45I10.00
adrenal gland, embryo E18.CNhs11026.1262-18F50.15
adrenal gland, neonate N00.CNhs11191.1311-23C10.12
adrenal gland, neonate N25.CNhs11223.1377-27I30.13
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.00
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.16
bone (os femoris), neonate N16.CNhs11225.1525-43A60.44
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H41.86
cerebellum, adult.CNhs10494.15-8B20.00
cerebellum, neonate N30.CNhs11135.1395-42I20.00
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.64
corpora quadrigemina, adult.CNhs10501.16-22A40.15
corpus striatum, adult.CNhs10487.19-21D80.00
corpus striatum, neonate N00.CNhs11226.630-43F11.76
cortex, adult.CNhs10473.12-14D50.17
cortex, neonate N30.CNhs11107.1392-42F20.51
diencephalon, adult.CNhs10482.20-12F20.00
diencephalon, neonate N30.CNhs11201.1388-42B20.49
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.61
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.00
epididymis, adult.CNhs10490.58-23B20.51
eyeball, adult.CNhs10484.31-12G40.42
eyeball, embryo E12.CNhs11016.345-16C60.13
eyeball, embryo E14.CNhs10521.399-16E20.23
eyeball, embryo E15.CNhs10593.426-16C90.18
eyeball, embryo E17.CNhs11023.1261-18D40.00
eyeball, neonate N00.CNhs11207.633-15C60.34
eyeball, neonate N01.CNhs11140.1532-43E70.13
eyeball, neonate N02.CNhs11205.1551-44G80.09
eyeball, neonate N16.CNhs11188.777-19A20.00
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.19
forelimb, embryo E13.CNhs10589.384-1E20.18
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.56
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.21
gonad, embryo E13.CNhs11044.1564-45I60.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.77
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.00
heart, embryo E12.CNhs11015.353-12F50.47
heart, embryo E13.CNhs11013.376-3I90.00
heart, embryo E14.CNhs10597.403-26D40.24
heart, embryo E15.CNhs11017.431-16C80.00
heart, embryo E16.CNhs11021.457-17C60.15
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.00
heart, neonate N00.CNhs11213.639-21E30.35
heart, neonate N03.CNhs11221.1349-25I20.66
heart, neonate N10.CNhs11118.749-24G10.16
heart, neonate N16.CNhs11209.782-15G10.32
heart, neonate N20.CNhs11127.821-26I60.29
heart, neonate N25.CNhs11196.1351-25D30.66
heart, neonate N30.CNhs11202.1390-42D20.00
hippocampus, adult.CNhs10478.13-16E80.21
hippocampus, neonate N00.CNhs11228.627-43G15.56
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I50.21
intestine, embryo E13.CNhs11010.381-16D50.23
intestine, embryo E15.CNhs10602.976-16D80.00
intestine, embryo E16.CNhs10585.463-22H40.00
intestine, embryo E17.CNhs10582.482-18D30.00
intestine, embryo E18.CNhs10526.1289-20F70.00
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.00
intestine, neonate N06.CNhs11102.688-20B80.25
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.00
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.20
kidney, embryo E14.CNhs10606.411-4I90.38
kidney, embryo E15.CNhs10997.434-16F80.23
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.00
kidney, embryo E18.CNhs11001.1288-20C70.00
kidney, neonate N00.CNhs11214.646-21G70.42
kidney, neonate N10.CNhs11206.758-6D50.25
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.63
kidney, neonate N30.CNhs11203.1385-42H10.12
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G20.38
lung, embryo E14.CNhs10604.404-26F80.00
lung, embryo E15.CNhs11020.432-17C50.00
lung, embryo E16.CNhs10998.458-17B60.00
lung, embryo E17.CNhs10605.480-44A60.17
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.78
lung, neonate N06.CNhs11212.683-20E50.32
lung, neonate N07.CNhs11111.715-19A30.22
lung, neonate N10.CNhs11219.750-23E60.00
lung, neonate N20.CNhs11109.822-18A40.00
lung, neonate N25.CNhs11119.1359-25C70.69
lung, neonate N30.CNhs11133.1394-42H20.43
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.49
mammary gland, adult pregnant day19.CNhs10476.588-5H20.28
medulla oblongata, adult.CNhs10477.17-12C20.00
medulla oblongata, neonate N30.CNhs11200.1396-42A30.00
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.49
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.25
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.24
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.22
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.28
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.29
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.00
olfactory brain, adult.CNhs10489.18-22I90.32
ovary, adult.CNhs10507.91-2I70.14
ovary, embryo E18.CNhs11040.505-44H70.36
ovary, neonate N00.CNhs11217.1299-22I40.33
oviduct, adult pregnant day01.CNhs10500.988-6G60.16
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.00
pancreas, embryo E16.CNhs11003.460-26E50.38
pancreas, embryo E17.CNhs10599.1558-45G30.30
pancreas, embryo E18.CNhs10580.1535-43I70.31
pancreas, neonate N00.CNhs11105.645-26G90.26
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.68
pituitary gland, embryo E12.CNhs11018.346-16E60.36
pituitary gland, embryo E13.CNhs11009.370-44C70.13
pituitary gland, embryo E14.CNhs11037.398-44A50.00
pituitary gland, embryo E15.CNhs10592.427-16B90.18
pituitary gland, embryo E16.CNhs11036.449-43F60.54
pituitary gland, embryo E17.CNhs11039.1265-44F50.00
pituitary gland, neonate N00.CNhs11190.1308-22E90.00
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.42
prostate, adult.CNhs10470.859-1F80.22
skin, adult.CNhs10492.30-1C30.33
skin, neonate N00.CNhs11124.650-25G40.32
skin, neonate N03.CNhs11215.662-22H30.54
skin, neonate N06.CNhs11097.693-20I50.84
skin, neonate N10.CNhs11108.762-6C41.81
small intestine, neonate N16.CNhs11114.790-21I10.29
spinal cord, adult.CNhs10505.24-13C90.19
spleen, adult.CNhs10465.25-2G20.17
spleen, embryo E16.CNhs11035.461-43C10.41
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.14
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.34
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.14
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.28
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.32
stomach, embryo E15.CNhs10603.1252-16G80.20
stomach, embryo E16.CNhs11022.459-17D40.11
stomach, embryo E17.CNhs11006.1035-18D50.21
stomach, embryo E18.CNhs10999.1286-20C60.00
stomach, neonate N03.CNhs11193.1340-24B80.13
stomach, neonate N07.CNhs11210.718-18A90.17
stomach, neonate N25.CNhs11104.1355-25E40.00
stomach, neonate N30.CNhs11134.1386-42I10.13
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.19
testis, embryo E17.CNhs11029.486-18I50.00
testis, embryo E18.CNhs11027.503-18G50.00
testis, neonate N00.CNhs11189.1300-22B70.12
testis, neonate N07.CNhs11222.726-26I40.26
testis, neonate N10.CNhs11204.763-44D90.42
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.29
thymus, adult.CNhs10471.38-12B50.32
thymus, embryo E14.CNhs11041.402-44I40.41
thymus, embryo E15.CNhs11005.430-45I20.21
thymus, embryo E16.CNhs11002.456-26C50.39
thymus, embryo E17.CNhs10581.478-18C10.36
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.12
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.20
thymus, neonate N07.CNhs11211.713-19D30.46
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.19
thymus, neonate N25.CNhs11125.1362-25G70.10
thymus, neonate N30.CNhs11132.1393-42G20.23
tongue, adult.CNhs10499.32-1B40.23
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.17
urinary bladder, adult.CNhs10481.879-12E40.77
uterus, adult pregnant day19.CNhs10497.590-15F50.19
uterus, adult.CNhs10509.92-27E50.37
vagina, adult.CNhs10502.89-27D50.21
vesicular gland, adult.CNhs10491.51-27F80.50
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A10.56
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A20.46
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A30.57
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D70.52
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A40.69
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A50.00
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A60.68
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.00
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A80.91
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A90.52
whole body, embryo E11.CNhs11014.324-5I80.00
whole body, embryo E12.CNhs10587.857-27C90.00
whole body, embryo E13.CNhs10512.372-23H20.34
whole body, embryo E14.5.CNhs10578.420-27D20.24
whole body, embryo E14.CNhs10519.395-14B10.00
whole body, embryo E16.CNhs10514.453-14F20.55
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.22
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.21
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.09
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.23
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.35
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.34
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.35
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.29
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.73
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.26
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.27
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.12
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.10
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.00
whole body, embryo E17.5.CNhs10513.490-9F90.19
whole body, embryo E17.CNhs10517.475-3I50.50
whole body, embryo E18.CNhs10516.493-3B30.23
whole body, neonate N00.CNhs10525.657-19C20.21
whole body, neonate N01.CNhs10576.659-23C60.57
whole body, neonate N06.CNhs10515.692-21D10.22
whole body, neonate N10.CNhs10518.761-6B40.00





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
Ammon's horn8.33e-167
lobe parts of cerebral cortex8.33e-167
hippocampal formation8.33e-167
limbic system8.33e-167
limbic lobe8.33e-167
cerebral cortex1.21e-1521
cerebral hemisphere1.21e-1521
pallium1.21e-1521
brain grey matter1.64e-1429
regional part of telencephalon1.64e-1429
telencephalon1.64e-1429
gray matter2.80e-1234
regional part of forebrain1.29e-1039
forebrain1.29e-1039
future forebrain1.29e-1039
anterior neural tube2.48e-1040
regional part of brain6.90e-0946
brain1.11e-0847
future brain1.11e-0847
central nervous system2.23e-0873
pre-chordal neural plate2.69e-0849
caecum3.50e-081
midgut3.50e-081
nervous system4.00e-0875
neural tube8.96e-0852
neural rod8.96e-0852
future spinal cord8.96e-0852
neural keel8.96e-0852
ectoderm-derived structure1.36e-0795
ectoderm1.36e-0795
presumptive ectoderm1.36e-0795
regional part of nervous system1.86e-0754
ecto-epithelium9.64e-0773







Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr13:29045296..29045307,-&oldid=2910248"