FFCP PHASE1:Mm9::chr1:140033111..140033124,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:140033111..140033124,-|id=chr1:140033111..140033124,-|ontology_enrichment_celltype=CL:0000838!3.18e-22!12;CL:0000084!7.83e-21!11;CL:0000827!7.83e-21!11;CL:0000542!2.90e-20!13;CL:0000051!2.90e-20!13;CL:0000791!1.32e-17!9;CL:0000789!1.32e-17!9;CL:0002420!1.32e-17!9;CL:0002419!1.32e-17!9;CL:0000790!1.32e-17!9;CL:0000738!4.05e-17!17;CL:0002087!4.05e-17!17;CL:0000988!1.47e-16!32;CL:0002032!1.47e-16!32;CL:0000037!1.47e-16!32;CL:0000566!1.47e-16!32;CL:0000837!1.47e-16!32;CL:0002031!4.44e-16!25;CL:0000624!5.63e-16!8;CL:0000893!1.74e-12!6;CL:0002489!1.74e-12!6;CL:0000898!1.74e-12!6;CL:0000809!1.74e-12!6;CL:0000810!1.74e-12!6;CL:0000895!1.74e-12!6;CL:0000808!1.74e-12!6;CL:0000894!1.74e-12!6;CL:0000806!1.74e-12!6;CL:0000807!1.74e-12!6;CL:0000805!1.74e-12!6;CL:0002425!1.74e-12!6;CL:0002436!1.74e-12!6;CL:0002427!1.74e-12!6;CL:0002428!1.74e-12!6;CL:0002429!1.74e-12!6;CL:0002433!1.74e-12!6;CL:0002431!1.74e-12!6;CL:0002432!1.74e-12!6;CL:0002320!5.38e-10!46;CL:0000134!5.38e-10!46;CL:0000219!1.02e-08!54|ontology_enrichment_celltype_v019_2=CL:0000084,3.68e-43,11;CL:0000827,3.68e-43,11;CL:0000838,2.01e-39,12;CL:0000542,2.93e-36,13;CL:0000051,2.93e-36,13;CL:0000791,3.65e-36,9;CL:0000789,3.65e-36,9;CL:0002420,3.65e-36,9;CL:0002419,3.65e-36,9;CL:0000790,3.65e-36,9;CL:0000624,1.24e-32,8;CL:0000738,2.55e-27,17;CL:0002087,2.55e-27,17;CL:0000893,4.39e-25,6;CL:0002489,4.39e-25,6;CL:0000898,4.39e-25,6;CL:0000809,4.39e-25,6;CL:0000810,4.39e-25,6;CL:0000895,4.39e-25,6;CL:0000808,4.39e-25,6;CL:0000894,4.39e-25,6;CL:0000806,4.39e-25,6;CL:0000807,4.39e-25,6;CL:0000805,4.39e-25,6;CL:0002425,4.39e-25,6;CL:0002436,4.39e-25,6;CL:0002427,4.39e-25,6;CL:0002428,4.39e-25,6;CL:0002429,4.39e-25,6;CL:0002433,4.39e-25,6;CL:0002431,4.39e-25,6;CL:0002432,4.39e-25,6;CL:0002031,2.28e-21,25;CL:0000988,2.97e-16,32;CL:0002032,2.97e-16,32;CL:0000037,2.97e-16,32;CL:0000837,2.97e-16,32;CL:0002320,1.10e-10,46;CL:0000134,1.10e-10,46;CL:0000219,8.45e-09,54;CL:0000723,1.56e-07,91;CL:0000048,1.56e-07,91;CL:0000034,6.70e-07,97|ontology_enrichment_disease=DOID:0060100!4.33e-07!3;DOID:4045!4.33e-07!3|ontology_enrichment_disease_v019_2=DOID:0060100,1.81e-13,3;DOID:4045,1.81e-13,3;DOID:0050686,5.92e-07,6|ontology_enrichment_uberon=UBERON:0002370!9.13e-29!23;UBERON:0000974!9.13e-29!23;UBERON:0004807!9.13e-29!23;UBERON:0005058!9.13e-29!23;UBERON:0003351!9.13e-29!23;UBERON:0009113!9.13e-29!23;UBERON:0003295!9.13e-29!23;UBERON:0009722!9.13e-29!23;UBERON:0005562!9.13e-29!23;UBERON:0007690!9.13e-29!23;UBERON:0006562!2.49e-27!24;UBERON:0003408!2.49e-27!24;UBERON:0001557!2.49e-27!24;UBERON:0001042!2.49e-27!24;UBERON:0008814!2.49e-27!24;UBERON:0009145!2.49e-27!24;UBERON:0004177!7.32e-24!29;UBERON:0000072!1.16e-23!27;UBERON:0002390!2.07e-21!45;UBERON:0003061!2.07e-21!45;UBERON:0002193!2.36e-21!48;UBERON:0000065!2.59e-18!41;UBERON:0001004!9.98e-18!42;UBERON:0000063!5.64e-17!35;UBERON:0002405!2.17e-12!70;UBERON:0005057!4.20e-11!51;UBERON:0002384!5.38e-10!46;UBERON:0000490!1.05e-09!66;UBERON:0003081!2.76e-09!88;UBERON:0003929!7.11e-09!55;UBERON:0005911!1.90e-08!69;UBERON:0002368!1.02e-07!60;UBERON:0002530!9.45e-07!65|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.92e-16,23;UBERON:0000974,2.92e-16,23;UBERON:0004807,2.92e-16,23;UBERON:0005058,2.92e-16,23;UBERON:0003351,2.92e-16,23;UBERON:0009113,2.92e-16,23;UBERON:0003295,2.92e-16,23;UBERON:0009722,2.92e-16,23;UBERON:0005562,2.92e-16,23;UBERON:0007690,2.92e-16,23;UBERON:0006562,1.62e-15,24;UBERON:0003408,1.62e-15,24;UBERON:0001557,1.62e-15,24;UBERON:0001042,1.62e-15,24;UBERON:0008814,1.62e-15,24;UBERON:0009145,1.62e-15,24;UBERON:0000072,1.28e-13,27;UBERON:0004177,1.44e-12,29;UBERON:0005057,1.44e-12,29;UBERON:0002384,1.10e-10,46;UBERON:0000077,3.85e-10,35;UBERON:0007811,8.16e-10,36;UBERON:0002390,4.03e-09,45;UBERON:0003061,4.03e-09,45;UBERON:0002193,1.95e-08,48;UBERON:0002405,1.95e-08,48;UBERON:0000065,2.01e-08,41;UBERON:0000490,2.37e-08,66;UBERON:0001004,3.49e-08,42;UBERON:0000153,5.89e-08,43|phase1_expression=0,0,0,0,0,0,0,6.19791952519566,28.8616880410917,23.6405171585213,5.13653904676515,4.78632953972018,3.76641605848653,3.58423649917889,0.666219523631325,0,0,0,0.137114433605739,1.27316895539409,0,1.29078236561151,1.30599894569468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.27797446105362,8.5946887897618,4.18818995179039,187.645844681894,6.83045484958446,1.94204141212461,0,0,0,0,0,0,0,0,0,0.671130424230945,1.45072428402269,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0.365950574409639,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517875767294343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599075622529601,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189106080167819,0,0,0,0,0,0,0,0.51469581422943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228778173206523,0.679913719975421,0.559805809294632,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26404448251271,0.810900861160657,0.410843828659309,0.909445760844565,0.716106782669926,0.596044064343795,0.961563596159751,0.738447635872886,0.908698049533329,0.914481679859998,0.705783295957884,1.36441033035653,1.6356013078856,2.68816875017609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:140033111..140033124,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:140033111..140033124,- | |||
|id=chr1:140033111..140033124,- | |||
|ontology_enrichment_celltype=CL:0000838!3.18e-22!12;CL:0000084!7.83e-21!11;CL:0000827!7.83e-21!11;CL:0000542!2.90e-20!13;CL:0000051!2.90e-20!13;CL:0000791!1.32e-17!9;CL:0000789!1.32e-17!9;CL:0002420!1.32e-17!9;CL:0002419!1.32e-17!9;CL:0000790!1.32e-17!9;CL:0000738!4.05e-17!17;CL:0002087!4.05e-17!17;CL:0000988!1.47e-16!32;CL:0002032!1.47e-16!32;CL:0000037!1.47e-16!32;CL:0000566!1.47e-16!32;CL:0000837!1.47e-16!32;CL:0002031!4.44e-16!25;CL:0000624!5.63e-16!8;CL:0000893!1.74e-12!6;CL:0002489!1.74e-12!6;CL:0000898!1.74e-12!6;CL:0000809!1.74e-12!6;CL:0000810!1.74e-12!6;CL:0000895!1.74e-12!6;CL:0000808!1.74e-12!6;CL:0000894!1.74e-12!6;CL:0000806!1.74e-12!6;CL:0000807!1.74e-12!6;CL:0000805!1.74e-12!6;CL:0002425!1.74e-12!6;CL:0002436!1.74e-12!6;CL:0002427!1.74e-12!6;CL:0002428!1.74e-12!6;CL:0002429!1.74e-12!6;CL:0002433!1.74e-12!6;CL:0002431!1.74e-12!6;CL:0002432!1.74e-12!6;CL:0002320!5.38e-10!46;CL:0000134!5.38e-10!46;CL:0000219!1.02e-08!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.68e-43,11;CL:0000827,3.68e-43,11;CL:0000838,2.01e-39,12;CL:0000542,2.93e-36,13;CL:0000051,2.93e-36,13;CL:0000791,3.65e-36,9;CL:0000789,3.65e-36,9;CL:0002420,3.65e-36,9;CL:0002419,3.65e-36,9;CL:0000790,3.65e-36,9;CL:0000624,1.24e-32,8;CL:0000738,2.55e-27,17;CL:0002087,2.55e-27,17;CL:0000893,4.39e-25,6;CL:0002489,4.39e-25,6;CL:0000898,4.39e-25,6;CL:0000809,4.39e-25,6;CL:0000810,4.39e-25,6;CL:0000895,4.39e-25,6;CL:0000808,4.39e-25,6;CL:0000894,4.39e-25,6;CL:0000806,4.39e-25,6;CL:0000807,4.39e-25,6;CL:0000805,4.39e-25,6;CL:0002425,4.39e-25,6;CL:0002436,4.39e-25,6;CL:0002427,4.39e-25,6;CL:0002428,4.39e-25,6;CL:0002429,4.39e-25,6;CL:0002433,4.39e-25,6;CL:0002431,4.39e-25,6;CL:0002432,4.39e-25,6;CL:0002031,2.28e-21,25;CL:0000988,2.97e-16,32;CL:0002032,2.97e-16,32;CL:0000037,2.97e-16,32;CL:0000837,2.97e-16,32;CL:0002320,1.10e-10,46;CL:0000134,1.10e-10,46;CL:0000219,8.45e-09,54;CL:0000723,1.56e-07,91;CL:0000048,1.56e-07,91;CL:0000034,6.70e-07,97 | |||
|ontology_enrichment_disease=DOID:0060100!4.33e-07!3;DOID:4045!4.33e-07!3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,1.81e-13,3;DOID:4045,1.81e-13,3;DOID:0050686,5.92e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002370!9.13e-29!23;UBERON:0000974!9.13e-29!23;UBERON:0004807!9.13e-29!23;UBERON:0005058!9.13e-29!23;UBERON:0003351!9.13e-29!23;UBERON:0009113!9.13e-29!23;UBERON:0003295!9.13e-29!23;UBERON:0009722!9.13e-29!23;UBERON:0005562!9.13e-29!23;UBERON:0007690!9.13e-29!23;UBERON:0006562!2.49e-27!24;UBERON:0003408!2.49e-27!24;UBERON:0001557!2.49e-27!24;UBERON:0001042!2.49e-27!24;UBERON:0008814!2.49e-27!24;UBERON:0009145!2.49e-27!24;UBERON:0004177!7.32e-24!29;UBERON:0000072!1.16e-23!27;UBERON:0002390!2.07e-21!45;UBERON:0003061!2.07e-21!45;UBERON:0002193!2.36e-21!48;UBERON:0000065!2.59e-18!41;UBERON:0001004!9.98e-18!42;UBERON:0000063!5.64e-17!35;UBERON:0002405!2.17e-12!70;UBERON:0005057!4.20e-11!51;UBERON:0002384!5.38e-10!46;UBERON:0000490!1.05e-09!66;UBERON:0003081!2.76e-09!88;UBERON:0003929!7.11e-09!55;UBERON:0005911!1.90e-08!69;UBERON:0002368!1.02e-07!60;UBERON:0002530!9.45e-07!65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.92e-16,23;UBERON:0000974,2.92e-16,23;UBERON:0004807,2.92e-16,23;UBERON:0005058,2.92e-16,23;UBERON:0003351,2.92e-16,23;UBERON:0009113,2.92e-16,23;UBERON:0003295,2.92e-16,23;UBERON:0009722,2.92e-16,23;UBERON:0005562,2.92e-16,23;UBERON:0007690,2.92e-16,23;UBERON:0006562,1.62e-15,24;UBERON:0003408,1.62e-15,24;UBERON:0001557,1.62e-15,24;UBERON:0001042,1.62e-15,24;UBERON:0008814,1.62e-15,24;UBERON:0009145,1.62e-15,24;UBERON:0000072,1.28e-13,27;UBERON:0004177,1.44e-12,29;UBERON:0005057,1.44e-12,29;UBERON:0002384,1.10e-10,46;UBERON:0000077,3.85e-10,35;UBERON:0007811,8.16e-10,36;UBERON:0002390,4.03e-09,45;UBERON:0003061,4.03e-09,45;UBERON:0002193,1.95e-08,48;UBERON:0002405,1.95e-08,48;UBERON:0000065,2.01e-08,41;UBERON:0000490,2.37e-08,66;UBERON:0001004,3.49e-08,42;UBERON:0000153,5.89e-08,43 | |||
|phase1_expression=0,0,0,0,0,0,0,6.19791952519566,28.8616880410917,23.6405171585213,5.13653904676515,4.78632953972018,3.76641605848653,3.58423649917889,0.666219523631325,0,0,0,0.137114433605739,1.27316895539409,0,1.29078236561151,1.30599894569468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.27797446105362,8.5946887897618,4.18818995179039,187.645844681894,6.83045484958446,1.94204141212461,0,0,0,0,0,0,0,0,0,0.671130424230945,1.45072428402269,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0.365950574409639,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517875767294343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599075622529601,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189106080167819,0,0,0,0,0,0,0,0.51469581422943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228778173206523,0.679913719975421,0.559805809294632,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26404448251271,0.810900861160657,0.410843828659309,0.909445760844565,0.716106782669926,0.596044064343795,0.961563596159751,0.738447635872886,0.908698049533329,0.914481679859998,0.705783295957884,1.36441033035653,1.6356013078856,2.68816875017609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:140033111..140033124,- | |||
}} |
Revision as of 19:07, 13 September 2013
Short description: | p@chr1:140033111..140033124, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:140033111..140033124, - |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 2.92e-16 | 23 |
neck | 2.92e-16 | 23 |
respiratory system epithelium | 2.92e-16 | 23 |
hemolymphoid system gland | 2.92e-16 | 23 |
pharyngeal epithelium | 2.92e-16 | 23 |
thymic region | 2.92e-16 | 23 |
pharyngeal gland | 2.92e-16 | 23 |
entire pharyngeal arch endoderm | 2.92e-16 | 23 |
thymus primordium | 2.92e-16 | 23 |
early pharyngeal endoderm | 2.92e-16 | 23 |
pharynx | 1.62e-15 | 24 |
gland of gut | 1.62e-15 | 24 |
upper respiratory tract | 1.62e-15 | 24 |
chordate pharynx | 1.62e-15 | 24 |
pharyngeal arch system | 1.62e-15 | 24 |
pharyngeal region of foregut | 1.62e-15 | 24 |
segment of respiratory tract | 1.28e-13 | 27 |
hemopoietic organ | 1.44e-12 | 29 |
immune organ | 1.44e-12 | 29 |
connective tissue | 1.10e-10 | 46 |
mixed endoderm/mesoderm-derived structure | 3.85e-10 | 35 |
craniocervical region | 8.16e-10 | 36 |
hematopoietic system | 4.03e-09 | 45 |
blood island | 4.03e-09 | 45 |
hemolymphoid system | 1.95e-08 | 48 |
immune system | 1.95e-08 | 48 |
respiratory tract | 2.01e-08 | 41 |
unilaminar epithelium | 2.37e-08 | 66 |
respiratory system | 3.49e-08 | 42 |
anterior region of body | 5.89e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 1.81e-13 | 3 |
muscle cancer | 1.81e-13 | 3 |
organ system cancer | 5.92e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.