FFCP PHASE1:Mm9::chr3:89324074..89324097,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=140493|HGNC=|UniProt=Q3UUY9|association_with_transcript=0bp_to_ENSMUST00000000811,NM_080466,uc012cso.1_5end|description=CAGE_peak_1_at_Kcnn3_5end|id=chr3:89324074..89324097,+|ontology_enrichment_celltype=CL:0000117!1.37e-09!23;CL:0000337!1.37e-09!23;CL:0000540!5.87e-07!33;CL:0000047!5.87e-07!33;CL:0000031!5.87e-07!33;CL:0000404!5.87e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,6.42e-10,23;CL:0000337,6.42e-10,23;CL:0000540,7.97e-07,33;CL:0000047,7.97e-07,33;CL:0000031,7.97e-07,33;CL:0000404,7.97e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.17e-16!73;UBERON:0005743!5.17e-16!73;UBERON:0001049!7.12e-15!52;UBERON:0005068!7.12e-15!52;UBERON:0006241!7.12e-15!52;UBERON:0007135!7.12e-15!52;UBERON:0000073!9.72e-15!75;UBERON:0001016!9.72e-15!75;UBERON:0000955!1.49e-14!50;UBERON:0006238!1.49e-14!50;UBERON:0002616!6.08e-14!49;UBERON:0002020!2.35e-13!34;UBERON:0003080!1.37e-12!40;UBERON:0002346!2.88e-12!71;UBERON:0003075!2.88e-12!71;UBERON:0007284!2.88e-12!71;UBERON:0002780!5.26e-12!39;UBERON:0001890!5.26e-12!39;UBERON:0006240!5.26e-12!39;UBERON:0000033!1.75e-11!63;UBERON:0000468!2.08e-11!333;UBERON:0004121!2.74e-11!102;UBERON:0000924!2.74e-11!102;UBERON:0006601!2.74e-11!102;UBERON:0002791!4.09e-11!29;UBERON:0003528!4.09e-11!29;UBERON:0001893!4.09e-11!29;UBERON:0003056!1.62e-10!49;UBERON:0000922!2.36e-08!328;UBERON:0000956!7.29e-08!21;UBERON:0001869!7.29e-08!21;UBERON:0000203!7.29e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.55e-17,54;UBERON:0001017,2.62e-16,73;UBERON:0001049,1.51e-15,52;UBERON:0005068,1.51e-15,52;UBERON:0006241,1.51e-15,52;UBERON:0007135,1.51e-15,52;UBERON:0001016,5.09e-15,75;UBERON:0002020,7.71e-14,34;UBERON:0000955,3.00e-13,47;UBERON:0006238,3.00e-13,47;UBERON:0003080,4.82e-13,40;UBERON:0002346,5.45e-13,64;UBERON:0003075,5.45e-13,64;UBERON:0007284,5.45e-13,64;UBERON:0002616,1.23e-12,46;UBERON:0002780,1.96e-12,39;UBERON:0001890,1.96e-12,39;UBERON:0006240,1.96e-12,39;UBERON:0003528,1.66e-11,29;UBERON:0002791,1.66e-11,29;UBERON:0001893,1.66e-11,29;UBERON:0004121,6.87e-11,95;UBERON:0000924,6.87e-11,95;UBERON:0006601,6.87e-11,95;UBERON:0010371,1.25e-10,73;UBERON:0003056,2.23e-10,49;UBERON:0010314,5.52e-10,92;UBERON:0000956,4.01e-08,21;UBERON:0001869,4.01e-08,21;UBERON:0000203,4.01e-08,21;UBERON:0002021,8.78e-07,10;UBERON:0000411,8.78e-07,10;UBERON:0001950,8.78e-07,10|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99703463710028,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.506884656097573,0,0,3.2703773457067,1.09843091367236,1.55543919259427,2.65974201088189,2.87505128729943,0,0,0,0.514518872071894,0.573066879877513,1.03134418455488,6.06949382578793,6.87688273053643,5.70448263155561,0,0,0,0,0,1.49800055259202,3.84218305321555,8.39885859698669,8.6403800532282,6.73039876324422,6.28432165688368,4.41737081903227,2.69479758272899,2.68367318851062,3.67687514644008,13.2139057199266,17.6208526557559,18.7399970572617,6.59431438650969,6.95306091378313,2.08365348222704,8.65467296904281,7.87867654044352,14.0574387954665,13.8475435172624,15.9456282494995,7.64237727883732,0,0.151143120213571,1.15945795480671,0,0,0,0,0,1.54488862144927,0,0,0,2.25349471642689,0,0,0,1.94841936910093,2.02687892380079,3.0331466700887,0.34255163915718,0,2.3750742250372,3.29622120855658,3.04465478312141,1.61430848079241,1.50722640552623,3.99801604261396,0.628332956648377,0.988779870937496,1.59059292611903,0.884610551949874,3.23533699894818,0.883366073841574,0.969750506270444,1.86391761218122,2.92780797011547,1.46612694769419,2.04365644166873,0,0,0,11.6836698735762,32.4825428001225,6.91098936620754,9.56033761057521,6.64860189058859,25.7657175253855,17.1975738851823,7.94347038032467,1.36847667671102,0.758168275301024,0.841767423545896,0.780722657776222,1.60931473103431,2.70093194708024,2.10986744970001,1.83698547708585,2.0498195245576,2.62364828767241,2.58703370739016,0.646703978798527,3.40390944302075,5.10258260075452,2.41115305670332,4.72680323683516,6.61679116392116,5.76189981942242,2.58744546864041,0,0,0,0.414251545071004,1.17263029990548,1.98068267607116,4.49814997611899,4.32881309844288,2.46827380619805,2.55787339225449,2.41446061259657,2.10177616260905,2.13927804887525,4.76085645829376,3.72916523910936,3.21639972335731,2.63460138349261,1.07365135008297,10.3042074796422,5.45394445610208,0.330418782983798,3.96675849995316,2.55945900642281,4.41249676534833,6.82997545007095,6.45387278794696,6.89371935919098,6.46767128782701,8.54152310780121,5.27036655116835,6.53471542880701,3.58121649674071,5.06906626509712,3.59527763461689,6.70027954611552,5.97423819763102,1.13800740571849,2.17072173958485,5.63538678365402,1.22190796707189,1.93952487167626,1.40271639780637,1.96033265085198,1.03327103585722,0.941992367048249,0.616985819609003,0,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0.287696137450811,0.162135226775035,0.549122826376163,1.43768206527355,0,0.62407534622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| ||
|EntrezGene=140493 | |||
|HGNC= | |||
|UniProt=Q3UUY9 | |||
|association_with_transcript=0bp_to_ENSMUST00000000811,NM_080466,uc012cso.1_5end | |||
|description=CAGE_peak_1_at_Kcnn3_5end | |||
|id=chr3:89324074..89324097,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.37e-09!23;CL:0000337!1.37e-09!23;CL:0000540!5.87e-07!33;CL:0000047!5.87e-07!33;CL:0000031!5.87e-07!33;CL:0000404!5.87e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.42e-10,23;CL:0000337,6.42e-10,23;CL:0000540,7.97e-07,33;CL:0000047,7.97e-07,33;CL:0000031,7.97e-07,33;CL:0000404,7.97e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.17e-16!73;UBERON:0005743!5.17e-16!73;UBERON:0001049!7.12e-15!52;UBERON:0005068!7.12e-15!52;UBERON:0006241!7.12e-15!52;UBERON:0007135!7.12e-15!52;UBERON:0000073!9.72e-15!75;UBERON:0001016!9.72e-15!75;UBERON:0000955!1.49e-14!50;UBERON:0006238!1.49e-14!50;UBERON:0002616!6.08e-14!49;UBERON:0002020!2.35e-13!34;UBERON:0003080!1.37e-12!40;UBERON:0002346!2.88e-12!71;UBERON:0003075!2.88e-12!71;UBERON:0007284!2.88e-12!71;UBERON:0002780!5.26e-12!39;UBERON:0001890!5.26e-12!39;UBERON:0006240!5.26e-12!39;UBERON:0000033!1.75e-11!63;UBERON:0000468!2.08e-11!333;UBERON:0004121!2.74e-11!102;UBERON:0000924!2.74e-11!102;UBERON:0006601!2.74e-11!102;UBERON:0002791!4.09e-11!29;UBERON:0003528!4.09e-11!29;UBERON:0001893!4.09e-11!29;UBERON:0003056!1.62e-10!49;UBERON:0000922!2.36e-08!328;UBERON:0000956!7.29e-08!21;UBERON:0001869!7.29e-08!21;UBERON:0000203!7.29e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.55e-17,54;UBERON:0001017,2.62e-16,73;UBERON:0001049,1.51e-15,52;UBERON:0005068,1.51e-15,52;UBERON:0006241,1.51e-15,52;UBERON:0007135,1.51e-15,52;UBERON:0001016,5.09e-15,75;UBERON:0002020,7.71e-14,34;UBERON:0000955,3.00e-13,47;UBERON:0006238,3.00e-13,47;UBERON:0003080,4.82e-13,40;UBERON:0002346,5.45e-13,64;UBERON:0003075,5.45e-13,64;UBERON:0007284,5.45e-13,64;UBERON:0002616,1.23e-12,46;UBERON:0002780,1.96e-12,39;UBERON:0001890,1.96e-12,39;UBERON:0006240,1.96e-12,39;UBERON:0003528,1.66e-11,29;UBERON:0002791,1.66e-11,29;UBERON:0001893,1.66e-11,29;UBERON:0004121,6.87e-11,95;UBERON:0000924,6.87e-11,95;UBERON:0006601,6.87e-11,95;UBERON:0010371,1.25e-10,73;UBERON:0003056,2.23e-10,49;UBERON:0010314,5.52e-10,92;UBERON:0000956,4.01e-08,21;UBERON:0001869,4.01e-08,21;UBERON:0000203,4.01e-08,21;UBERON:0002021,8.78e-07,10;UBERON:0000411,8.78e-07,10;UBERON:0001950,8.78e-07,10 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99703463710028,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.506884656097573,0,0,3.2703773457067,1.09843091367236,1.55543919259427,2.65974201088189,2.87505128729943,0,0,0,0.514518872071894,0.573066879877513,1.03134418455488,6.06949382578793,6.87688273053643,5.70448263155561,0,0,0,0,0,1.49800055259202,3.84218305321555,8.39885859698669,8.6403800532282,6.73039876324422,6.28432165688368,4.41737081903227,2.69479758272899,2.68367318851062,3.67687514644008,13.2139057199266,17.6208526557559,18.7399970572617,6.59431438650969,6.95306091378313,2.08365348222704,8.65467296904281,7.87867654044352,14.0574387954665,13.8475435172624,15.9456282494995,7.64237727883732,0,0.151143120213571,1.15945795480671,0,0,0,0,0,1.54488862144927,0,0,0,2.25349471642689,0,0,0,1.94841936910093,2.02687892380079,3.0331466700887,0.34255163915718,0,2.3750742250372,3.29622120855658,3.04465478312141,1.61430848079241,1.50722640552623,3.99801604261396,0.628332956648377,0.988779870937496,1.59059292611903,0.884610551949874,3.23533699894818,0.883366073841574,0.969750506270444,1.86391761218122,2.92780797011547,1.46612694769419,2.04365644166873,0,0,0,11.6836698735762,32.4825428001225,6.91098936620754,9.56033761057521,6.64860189058859,25.7657175253855,17.1975738851823,7.94347038032467,1.36847667671102,0.758168275301024,0.841767423545896,0.780722657776222,1.60931473103431,2.70093194708024,2.10986744970001,1.83698547708585,2.0498195245576,2.62364828767241,2.58703370739016,0.646703978798527,3.40390944302075,5.10258260075452,2.41115305670332,4.72680323683516,6.61679116392116,5.76189981942242,2.58744546864041,0,0,0,0.414251545071004,1.17263029990548,1.98068267607116,4.49814997611899,4.32881309844288,2.46827380619805,2.55787339225449,2.41446061259657,2.10177616260905,2.13927804887525,4.76085645829376,3.72916523910936,3.21639972335731,2.63460138349261,1.07365135008297,10.3042074796422,5.45394445610208,0.330418782983798,3.96675849995316,2.55945900642281,4.41249676534833,6.82997545007095,6.45387278794696,6.89371935919098,6.46767128782701,8.54152310780121,5.27036655116835,6.53471542880701,3.58121649674071,5.06906626509712,3.59527763461689,6.70027954611552,5.97423819763102,1.13800740571849,2.17072173958485,5.63538678365402,1.22190796707189,1.93952487167626,1.40271639780637,1.96033265085198,1.03327103585722,0.941992367048249,0.616985819609003,0,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0.287696137450811,0.162135226775035,0.549122826376163,1.43768206527355,0,0.624075346229121,0.252578877947112,0.538192240565737,0,5.17308932466493,1.32643988239339,1.46668478797823,0.678980343100753,0.938760993154008,0.335012514883631,0.714130922658041,2.14647012643579,4.57141917907954,5.09368786192182,2.55127629851979,3.60499292374624,5.69860440157455,6.36455857758651,0,0,1.96705709207614,2.20749397043786,7.70642831941401,5.62616095642575,0,2.52470927204373,2.2085575359138,1.56175497718655,6.46270193198397,0,0.891194696329576,1.98153571552183,2.02405350837447,2.33804686329049,3.55759000151871,12.5315313404505,3.83238230062325,6.94455854302295,7.16702621155735,28.2098910283036,3.98235415019888,5.09839335925461,1.81394134178851,1.88605079755898,3.2483208216885,4.30409207121498,2.84271122485043,2.18120237686503,2.85197902707777,8.84902922220285,6.32511651449993,6.18813259489121,11.5749465956288,1.8006109403131,1.55230420539305,1.71469628025274,7.27094957933322,3.0322698992352,3.45552943264454,2.13125464380219,0.23467170806371,0,2.64634077665954,2.63818004706368,2.26050197374268,1.32688434841943,0.358117032009409,0.820704498725306,10.2018292820448,8.90041449650446,0.341741761595705,2.27025554759545,2.59272338317596,0,0.27338845544205,0,0,0,0,3.81868247206045,2.21435195506795,5.89626454667861,5.50827238191186,6.89991376847747,6.33251434863915,7.28267470478032,12.4806718145257,9.6849698534091,6.73997861117323,0,0,3.43888055901151,1.15820943319968,3.50012139019286,2.97067593998782,4.56181538825101,4.5769323071844,2.99470085141085,0.629156066554265,0,0,0,2.02725215290164,0.718976700153791,0.649604114888975,0.537080087002444,0,0.360586348559907,0.738447635872886,0.403865799792591,0.0762068066549998,0.302478555410522,0.487289403698762,0.481059208201647,0.350630706544707,3.62768613784338,0,0.0897138566094757,0.335769232728157,11.7845652359636,6.75656911624255,12.0880072016395,2.35805216986972,2.50786052017682,10.7302850097243,8.28585425712918,13.7494923225455,8.07709957015332,6.85082519770642,7.55393897389701,8.77529250301348,7.20513925158753,8.15656336171568,7.24864436452548,1.3492355185943,2.79317411380722,2.90247129782028,5.59145449257076,1.88651846365184,2.20612210140017,4.22268782823069,5.15087643097235,4.81378814387723,5.81203587056734,6.33698249725599,6.79054828989874,5.61849044819294,6.21043978327232,6.83482080571798,4.76293691283074,3.94006708212509,5.40145817298374,7.82963211526283,5.2991611248383,3.42869252385415,3.90446773550542,4.5302876089991,3.6336604158082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| |||
|short_description=p1@Kcnn3 | |||
}} |
Revision as of 02:52, 14 September 2013
Short description: | p1@Kcnn3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kcnn3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000000811, NM_080466, uc012cso.1_5end |
EntrezGene: | Kcnn3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.42e-10 | 23 |
neuroblast (sensu Vertebrata) | 6.42e-10 | 23 |
neuron | 7.97e-07 | 33 |
neuronal stem cell | 7.97e-07 | 33 |
neuroblast | 7.97e-07 | 33 |
electrically signaling cell | 7.97e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 5.55e-17 | 54 |
central nervous system | 2.62e-16 | 73 |
neural tube | 1.51e-15 | 52 |
neural rod | 1.51e-15 | 52 |
future spinal cord | 1.51e-15 | 52 |
neural keel | 1.51e-15 | 52 |
nervous system | 5.09e-15 | 75 |
gray matter | 7.71e-14 | 34 |
brain | 3.00e-13 | 47 |
future brain | 3.00e-13 | 47 |
anterior neural tube | 4.82e-13 | 40 |
neurectoderm | 5.45e-13 | 64 |
neural plate | 5.45e-13 | 64 |
presumptive neural plate | 5.45e-13 | 64 |
regional part of brain | 1.23e-12 | 46 |
regional part of forebrain | 1.96e-12 | 39 |
forebrain | 1.96e-12 | 39 |
future forebrain | 1.96e-12 | 39 |
brain grey matter | 1.66e-11 | 29 |
regional part of telencephalon | 1.66e-11 | 29 |
telencephalon | 1.66e-11 | 29 |
ectoderm-derived structure | 6.87e-11 | 95 |
ectoderm | 6.87e-11 | 95 |
presumptive ectoderm | 6.87e-11 | 95 |
ecto-epithelium | 1.25e-10 | 73 |
pre-chordal neural plate | 2.23e-10 | 49 |
structure with developmental contribution from neural crest | 5.52e-10 | 92 |
cerebral cortex | 4.01e-08 | 21 |
cerebral hemisphere | 4.01e-08 | 21 |
pallium | 4.01e-08 | 21 |
occipital lobe | 8.78e-07 | 10 |
visual cortex | 8.78e-07 | 10 |
neocortex | 8.78e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.