FFCP PHASE1:Mm9::chr2:78709358..78709419,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22193|HGNC=|MCL_coexpression_id=22|UniProt=|association_with_transcript=0bp_to_ENSMUST00000153614_5end|description=CAGE_peak_2_at_Ube2e3_5end|id=chr2:78709358..78709419,+|ontology_enrichment_celltype=CL:0000540!1.21e-17!33;CL:0000047!1.21e-17!33;CL:0000031!1.21e-17!33;CL:0000404!1.21e-17!33;CL:0000117!3.99e-14!23;CL:0000337!3.99e-14!23;CL:0000393!1.02e-12!39;CL:0000211!1.02e-12!39;CL:0000221!1.09e-12!44;CL:0000133!1.09e-12!44;CL:0002319!2.98e-12!43;CL:0000055!1.85e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.21e-17,33;CL:0000047,1.21e-17,33;CL:0000031,1.21e-17,33;CL:0000404,1.21e-17,33;CL:0000117,3.99e-14,23;CL:0000337,3.99e-14,23;CL:0000393,1.02e-12,39;CL:0000211,1.02e-12,39;CL:0000221,1.09e-12,44;CL:0000133,1.09e-12,44;CL:0002319,2.98e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.03e-22!73;UBERON:0005743!2.03e-22!73;UBERON:0000073!2.04e-21!75;UBERON:0001016!2.04e-21!75;UBERON:0002346!6.89e-19!71;UBERON:0003075!6.89e-19!71;UBERON:0007284!6.89e-19!71;UBERON:0004121!1.37e-17!102;UBERON:0000924!1.37e-17!102;UBERON:0006601!1.37e-17!102;UBERON:0000033!1.59e-17!63;UBERON:0001049!3.08e-16!52;UBERON:0005068!3.08e-16!52;UBERON:0006241!3.08e-16!52;UBERON:0007135!3.08e-16!52;UBERON:0003056!5.12e-15!49;UBERON:0000955!1.79e-14!50;UBERON:0006238!1.79e-14!50;UBERON:0002020!2.18e-14!34;UBERON:0002616!6.32e-14!49;UBERON:0000153!6.73e-14!94;UBERON:0007811!6.83e-14!86;UBERON:0003080!7.55e-12!40;UBERON:0002780!1.25e-11!39;UBERON:0001890!1.25e-11!39;UBERON:0006240!1.25e-11!39;UBERON:0002791!2.08e-11!29;UBERON:0003528!2.08e-11!29;UBERON:0001893!2.08e-11!29;UBERON:0000956!8.71e-08!21;UBERON:0001869!8.71e-08!21;UBERON:0000203!8.71e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.03e-22,73;UBERON:0001016,2.03e-21,75;UBERON:0002346,7.42e-21,64;UBERON:0003075,7.42e-21,64;UBERON:0007284,7.42e-21,64;UBERON:0004121,8.93e-19,95;UBERON:0000924,8.93e-19,95;UBERON:0006601,8.93e-19,95;UBERON:0010314,4.40e-18,92;UBERON:0000073,6.96e-17,54;UBERON:0010371,9.35e-17,73;UBERON:0001049,3.07e-16,52;UBERON:0005068,3.07e-16,52;UBERON:0006241,3.07e-16,52;UBERON:0007135,3.07e-16,52;UBERON:0003056,5.12e-15,49;UBERON:0002020,2.18e-14,34;UBERON:0000955,2.07e-13,47;UBERON:0006238,2.07e-13,47;UBERON:0002616,7.16e-13,46;UBERON:0003080,7.55e-12,40;UBERON:0002780,1.25e-11,39;UBERON:0001890,1.25e-11,39;UBERON:0006240,1.25e-11,39;UBERON:0003528,2.08e-11,29;UBERON:0002791,2.08e-11,29;UBERON:0001893,2.08e-11,29;UBERON:0000956,8.71e-08,21;UBERON:0001869,8.71e-08,21;UBERON:0000203,8.71e-08,21|phase1_expression=19.8584570409945,1.74487703819681,0,1.81478526784098,2.50447864973174,2.51818907867835,2.80335168714631,0.774739940649458,1.97104211012333,1.17032263160997,1.19852577757853,0.797721589953364,2.39681021903688,1.13646523144697,3.99731714178795,11.9460407759997,15.3903613188192,3.62781490161973,4.9361196098066,3.81950686618227,4.59233766815777,9.33334941288322,10.9703911438353,2.23989391910769,2.2940928106717,2.8711598205751,0.86152399231815,1.29282739611533,2.66032787238923,2.52030129759931,1.77384408524244,6.35030673459631,6.1506478758457,15.8481681015439,5.19932915552294,4.65457007003779,5.3084032628216,3.76678467663217,7.813353445238,6.28228492768558,2.35292595212406,2.73218193983378,2.91306211818692,4.65818226509636,4.46058497365864,3.85448179539531,5.47673941043627,5.01457859675027,8.34807494390993,6.02732687130279,7.27929392451885,5.75010257459886,3.52343472721246,0.725362142011344,0.336093799142464,3.08711323243136,4.58453503902011,5.15672092277442,54.4231279712318,53.4280889064753,54.5095007015314,3.72728985276045,4.4464739805557,1.7997994345628,0,1.4209602298922,3.59520132622086,7.30014780110954,30.5884356310009,35.3715558429029,30.9177693186532,22.8520787523043,22.307722636113,43.2392521228788,36.9963518130392,35.8495326777908,13.2139057199266,14.4286692036262,17.9719643909805,45.2369966914565,42.0843160571084,44.2776364973246,17.8677119360884,15.757353080887,14.3630352910202,34.7661730858928,34.8810617957802,49.9550514811806,4.69502398665741,5.59229544790213,4.34796733052517,2.58127163094416,5.439770669662,4.31762553310254,5.84798775702902,3.13618820968135,3.65155492342555,5.11290967734173,4.1565760736459,2.82671659608272,17.4645840523084,10.2661181931454,7.64415719119937,14.2213340630666,2.38140145112336,3.29367825117628,3.53867111510348,3.65388415100992,2.07150306917737,3.85949561568544,8.50078101154066,8.52503339273995,7.84092690670599,7.83757730873637,9.05433044944927,5.15233024451669,0.741584903203122,2.4581890676385,4.42305275974937,5.3383060482645,4.63767188766826,3.87900202508178,1.86391761218122,22.2513405728776,24.2958179903608,3.0654846625031,21.3270921620538,20.9965955847693,17.4086211090099,12.2828324311955,10.5225138648284,39.7067752676652,10.2556348913443,10.9957646652042,17.2464076984435,14.4394724130304,12.0170449343373,4.22983700074316,4.0435641349388,4.8401626853889,15.8746940414499,24.3696230699481,23.4080768746954,18.9888070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| ||
|EntrezGene=22193 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000153614_5end | |||
|description=CAGE_peak_2_at_Ube2e3_5end | |||
|id=chr2:78709358..78709419,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.21e-17!33;CL:0000047!1.21e-17!33;CL:0000031!1.21e-17!33;CL:0000404!1.21e-17!33;CL:0000117!3.99e-14!23;CL:0000337!3.99e-14!23;CL:0000393!1.02e-12!39;CL:0000211!1.02e-12!39;CL:0000221!1.09e-12!44;CL:0000133!1.09e-12!44;CL:0002319!2.98e-12!43;CL:0000055!1.85e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.21e-17,33;CL:0000047,1.21e-17,33;CL:0000031,1.21e-17,33;CL:0000404,1.21e-17,33;CL:0000117,3.99e-14,23;CL:0000337,3.99e-14,23;CL:0000393,1.02e-12,39;CL:0000211,1.02e-12,39;CL:0000221,1.09e-12,44;CL:0000133,1.09e-12,44;CL:0002319,2.98e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.03e-22!73;UBERON:0005743!2.03e-22!73;UBERON:0000073!2.04e-21!75;UBERON:0001016!2.04e-21!75;UBERON:0002346!6.89e-19!71;UBERON:0003075!6.89e-19!71;UBERON:0007284!6.89e-19!71;UBERON:0004121!1.37e-17!102;UBERON:0000924!1.37e-17!102;UBERON:0006601!1.37e-17!102;UBERON:0000033!1.59e-17!63;UBERON:0001049!3.08e-16!52;UBERON:0005068!3.08e-16!52;UBERON:0006241!3.08e-16!52;UBERON:0007135!3.08e-16!52;UBERON:0003056!5.12e-15!49;UBERON:0000955!1.79e-14!50;UBERON:0006238!1.79e-14!50;UBERON:0002020!2.18e-14!34;UBERON:0002616!6.32e-14!49;UBERON:0000153!6.73e-14!94;UBERON:0007811!6.83e-14!86;UBERON:0003080!7.55e-12!40;UBERON:0002780!1.25e-11!39;UBERON:0001890!1.25e-11!39;UBERON:0006240!1.25e-11!39;UBERON:0002791!2.08e-11!29;UBERON:0003528!2.08e-11!29;UBERON:0001893!2.08e-11!29;UBERON:0000956!8.71e-08!21;UBERON:0001869!8.71e-08!21;UBERON:0000203!8.71e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.03e-22,73;UBERON:0001016,2.03e-21,75;UBERON:0002346,7.42e-21,64;UBERON:0003075,7.42e-21,64;UBERON:0007284,7.42e-21,64;UBERON:0004121,8.93e-19,95;UBERON:0000924,8.93e-19,95;UBERON:0006601,8.93e-19,95;UBERON:0010314,4.40e-18,92;UBERON:0000073,6.96e-17,54;UBERON:0010371,9.35e-17,73;UBERON:0001049,3.07e-16,52;UBERON:0005068,3.07e-16,52;UBERON:0006241,3.07e-16,52;UBERON:0007135,3.07e-16,52;UBERON:0003056,5.12e-15,49;UBERON:0002020,2.18e-14,34;UBERON:0000955,2.07e-13,47;UBERON:0006238,2.07e-13,47;UBERON:0002616,7.16e-13,46;UBERON:0003080,7.55e-12,40;UBERON:0002780,1.25e-11,39;UBERON:0001890,1.25e-11,39;UBERON:0006240,1.25e-11,39;UBERON:0003528,2.08e-11,29;UBERON:0002791,2.08e-11,29;UBERON:0001893,2.08e-11,29;UBERON:0000956,8.71e-08,21;UBERON:0001869,8.71e-08,21;UBERON:0000203,8.71e-08,21 | |||
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| |||
|short_description=p2@Ube2e3 | |||
}} |
Revision as of 00:41, 14 September 2013
Short description: | p2@Ube2e3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ube2e3_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000153614_5end |
EntrezGene: | Ube2e3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.21e-17 | 33 |
neuronal stem cell | 1.21e-17 | 33 |
neuroblast | 1.21e-17 | 33 |
electrically signaling cell | 1.21e-17 | 33 |
CNS neuron (sensu Vertebrata) | 3.99e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.99e-14 | 23 |
electrically responsive cell | 1.02e-12 | 39 |
electrically active cell | 1.02e-12 | 39 |
ectodermal cell | 1.09e-12 | 44 |
neurectodermal cell | 1.09e-12 | 44 |
neural cell | 2.98e-12 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.03e-22 | 73 |
nervous system | 2.03e-21 | 75 |
neurectoderm | 7.42e-21 | 64 |
neural plate | 7.42e-21 | 64 |
presumptive neural plate | 7.42e-21 | 64 |
ectoderm-derived structure | 8.93e-19 | 95 |
ectoderm | 8.93e-19 | 95 |
presumptive ectoderm | 8.93e-19 | 95 |
structure with developmental contribution from neural crest | 4.40e-18 | 92 |
regional part of nervous system | 6.96e-17 | 54 |
ecto-epithelium | 9.35e-17 | 73 |
neural tube | 3.07e-16 | 52 |
neural rod | 3.07e-16 | 52 |
future spinal cord | 3.07e-16 | 52 |
neural keel | 3.07e-16 | 52 |
pre-chordal neural plate | 5.12e-15 | 49 |
gray matter | 2.18e-14 | 34 |
brain | 2.07e-13 | 47 |
future brain | 2.07e-13 | 47 |
regional part of brain | 7.16e-13 | 46 |
anterior neural tube | 7.55e-12 | 40 |
regional part of forebrain | 1.25e-11 | 39 |
forebrain | 1.25e-11 | 39 |
future forebrain | 1.25e-11 | 39 |
brain grey matter | 2.08e-11 | 29 |
regional part of telencephalon | 2.08e-11 | 29 |
telencephalon | 2.08e-11 | 29 |
cerebral cortex | 8.71e-08 | 21 |
cerebral hemisphere | 8.71e-08 | 21 |
pallium | 8.71e-08 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.