FFCP PHASE1:Mm9::chr18:56892798..56892820,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16906|HGNC=|MCL_coexpression_id=6|UniProt=|association_with_transcript=-76bp_to_uc008eyu.1_5end|description=CAGE_peak_3_at_Lmnb1_5end|id=chr18:56892798..56892820,+|ontology_enrichment_celltype=CL:0000988!1.17e-11!32;CL:0002032!1.17e-11!32;CL:0000037!1.17e-11!32;CL:0000566!1.17e-11!32;CL:0000837!1.17e-11!32;CL:0000838!3.12e-08!12;CL:0000542!2.21e-07!13;CL:0000051!2.21e-07!13;CL:0000084!3.19e-07!11;CL:0000827!3.19e-07!11;CL:0002031!3.73e-07!25;CL:0000624!4.49e-07!8;CL:0002320!5.87e-07!46;CL:0000134!5.87e-07!46|ontology_enrichment_celltype_v019_2=CL:0000049,1.66e-11,19;CL:0000988,2.15e-11,32;CL:0002032,2.15e-11,32;CL:0000037,2.15e-11,32;CL:0000837,2.15e-11,32;CL:0002320,3.06e-07,46;CL:0000134,3.06e-07,46;CL:0000034,7.18e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,5.32e-11,3;DOID:4045,5.32e-11,3|ontology_enrichment_uberon=UBERON:0002193!2.23e-10!48;UBERON:0002390!2.33e-08!45;UBERON:0003061!2.33e-08!45;UBERON:0002405!3.33e-07!70;UBERON:0003081!4.35e-07!88;UBERON:0002384!5.87e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.10e-09,32;UBERON:0001474,1.67e-07,22;UBERON:0004765,1.67e-07,22;UBERON:0001434,1.67e-07,22;UBERON:0002384,3.06e-07,46|phase1_expression=0,0,0,0,0,0,0,0.258246646883153,2.25261955442667,1.63845168425395,0.856089841127525,0.239316476986009,0.171200729931206,0.0874204024189974,0.666219523631325,1.01237633694913,0,1.41957974411207,0.959801035240171,2.12194825899015,0.340173160604279,0.198581902401771,0.261199789138935,1.43993180514066,0.91763712426868,0,0,0,0,0,0,0,0,0,0,0,0,192.106018508241,117.981637023094,97.8989401231003,451.173551319788,286.879103682547,128.174733200225,0,0,0,0,0,0,0,0,0,5.20126078778983,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869593466105033,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,1.55362730188303,0,0,0,0,0,0.117588707135705,0,0.247194967734374,0.289198713839823,8.84610551949874,0.323533699894818,1.10420759230197,0.484875253135222,0,0,0,0,5.99075622529601,4.19931911695385,4.70159840170339,0,0,0,0,0,0,0,0,0.746441823660558,0,0,0.130120442962704,0,0,0,0.136072998302656,0,0,0,0,0,0,0,0,0,0,0,2.1066395619397,3.3455227924913,3.6941254921427,0,0,0,0,0,0,0,0,0.350296027101508,0,0,0.0810688095458557,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0.19496408711912,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0.287696137450811,0,0,0,1.11642284300551,0,0,0,0,0.923765950833023,0,0,0,0,0,0,0.195133647857799,0.472905432318573,0,0.159454768657487,0.491589944147214,0.172684981865896,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0.23467170806371,0,0,0.16488625294148,0,0,0,0,0,0,2.56306321196779,0.206386867963223,3.51869602002452,0.565105371014073,0.410082683163076,0.228778173206523,21.0773253192381,18.6135431590465,17.9659965945751,0,0,0,0,0,0,0,0.165306911450672,0,0,0,0,0,0,0,0.129159823477731,0,0.234714477291508,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0.302899349844443,0,0,0.292373642219257,0.0962118416403295,0.350630706544707,0.226730383615211,0,0,0,0,0.375364950902364,0,1.92931541171159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187283014939765,0,0,0,0,0,0.412085900803307,0.147198920134397,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0.220591419119515,0.463735671240843|short_description=p3@Lmnb1}} | ||
|EntrezGene=16906 | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt= | |||
|association_with_transcript=-76bp_to_uc008eyu.1_5end | |||
|description=CAGE_peak_3_at_Lmnb1_5end | |||
|id=chr18:56892798..56892820,+ | |||
|ontology_enrichment_celltype=CL:0000988!1.17e-11!32;CL:0002032!1.17e-11!32;CL:0000037!1.17e-11!32;CL:0000566!1.17e-11!32;CL:0000837!1.17e-11!32;CL:0000838!3.12e-08!12;CL:0000542!2.21e-07!13;CL:0000051!2.21e-07!13;CL:0000084!3.19e-07!11;CL:0000827!3.19e-07!11;CL:0002031!3.73e-07!25;CL:0000624!4.49e-07!8;CL:0002320!5.87e-07!46;CL:0000134!5.87e-07!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0000049,1.66e-11,19;CL:0000988,2.15e-11,32;CL:0002032,2.15e-11,32;CL:0000037,2.15e-11,32;CL:0000837,2.15e-11,32;CL:0002320,3.06e-07,46;CL:0000134,3.06e-07,46;CL:0000034,7.18e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,5.32e-11,3;DOID:4045,5.32e-11,3 | |||
|ontology_enrichment_uberon=UBERON:0002193!2.23e-10!48;UBERON:0002390!2.33e-08!45;UBERON:0003061!2.33e-08!45;UBERON:0002405!3.33e-07!70;UBERON:0003081!4.35e-07!88;UBERON:0002384!5.87e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.10e-09,32;UBERON:0001474,1.67e-07,22;UBERON:0004765,1.67e-07,22;UBERON:0001434,1.67e-07,22;UBERON:0002384,3.06e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,0.258246646883153,2.25261955442667,1.63845168425395,0.856089841127525,0.239316476986009,0.171200729931206,0.0874204024189974,0.666219523631325,1.01237633694913,0,1.41957974411207,0.959801035240171,2.12194825899015,0.340173160604279,0.198581902401771,0.261199789138935,1.43993180514066,0.91763712426868,0,0,0,0,0,0,0,0,0,0,0,0,192.106018508241,117.981637023094,97.8989401231003,451.173551319788,286.879103682547,128.174733200225,0,0,0,0,0,0,0,0,0,5.20126078778983,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869593466105033,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,1.55362730188303,0,0,0,0,0,0.117588707135705,0,0.247194967734374,0.289198713839823,8.84610551949874,0.323533699894818,1.10420759230197,0.484875253135222,0,0,0,0,5.99075622529601,4.19931911695385,4.70159840170339,0,0,0,0,0,0,0,0,0.746441823660558,0,0,0.130120442962704,0,0,0,0.136072998302656,0,0,0,0,0,0,0,0,0,0,0,2.1066395619397,3.3455227924913,3.6941254921427,0,0,0,0,0,0,0,0,0.350296027101508,0,0,0.0810688095458557,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0.19496408711912,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0.287696137450811,0,0,0,1.11642284300551,0,0,0,0,0.923765950833023,0,0,0,0,0,0,0.195133647857799,0.472905432318573,0,0.159454768657487,0.491589944147214,0.172684981865896,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0.23467170806371,0,0,0.16488625294148,0,0,0,0,0,0,2.56306321196779,0.206386867963223,3.51869602002452,0.565105371014073,0.410082683163076,0.228778173206523,21.0773253192381,18.6135431590465,17.9659965945751,0,0,0,0,0,0,0,0.165306911450672,0,0,0,0,0,0,0,0.129159823477731,0,0.234714477291508,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0.302899349844443,0,0,0.292373642219257,0.0962118416403295,0.350630706544707,0.226730383615211,0,0,0,0,0.375364950902364,0,1.92931541171159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187283014939765,0,0,0,0,0,0.412085900803307,0.147198920134397,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0.220591419119515,0.463735671240843 | |||
|short_description=p3@Lmnb1 | |||
}} |
Revision as of 16:23, 13 September 2013
Short description: | p3@Lmnb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lmnb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | -76bp_to_uc008eyu.1_5end |
EntrezGene: | Lmnb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
common myeloid progenitor | 1.66e-11 | 19 |
hematopoietic cell | 2.15e-11 | 32 |
hematopoietic oligopotent progenitor cell | 2.15e-11 | 32 |
hematopoietic stem cell | 2.15e-11 | 32 |
hematopoietic multipotent progenitor cell | 2.15e-11 | 32 |
connective tissue cell | 3.06e-07 | 46 |
mesenchymal cell | 3.06e-07 | 46 |
stem cell | 7.18e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.10e-09 | 32 |
bone element | 1.67e-07 | 22 |
skeletal element | 1.67e-07 | 22 |
skeletal system | 1.67e-07 | 22 |
connective tissue | 3.06e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 5.32e-11 | 3 |
muscle cancer | 5.32e-11 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.