FFCP PHASE1:Mm9::chr4:135528463..135528482,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=26394|HGNC=|UniProt=|association_with_transcript=20bp_to_ENSMUST00000145350_5end|description=CAGE_peak_2_at_Lypla2_5end|id=chr4:135528463..135528482,-|ontology_enrichment_celltype=CL:0002319!2.66e-10!43;CL:0000221!3.36e-10!44;CL:0000133!3.36e-10!44;CL:0000055!4.03e-09!50;CL:0002321!9.00e-07!70;CL:0000220!9.00e-07!70|ontology_enrichment_celltype_v019_2=CL:0002319,1.80e-10,43;CL:0000221,2.27e-10,44;CL:0000133,2.27e-10,44;CL:0002321,2.67e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.10e-19!75;UBERON:0001016!2.10e-19!75;UBERON:0001017!4.58e-18!73;UBERON:0005743!4.58e-18!73;UBERON:0004121!5.58e-14!102;UBERON:0000924!5.58e-14!102;UBERON:0006601!5.58e-14!102;UBERON:0001049!4.44e-13!52;UBERON:0005068!4.44e-13!52;UBERON:0006241!4.44e-13!52;UBERON:0007135!4.44e-13!52;UBERON:0002020!1.89e-11!34;UBERON:0000955!4.62e-11!50;UBERON:0006238!4.62e-11!50;UBERON:0003080!5.43e-11!40;UBERON:0002780!6.33e-11!39;UBERON:0001890!6.33e-11!39;UBERON:0006240!6.33e-11!39;UBERON:0002616!1.06e-10!49;UBERON:0002791!1.80e-09!29;UBERON:0003528!1.80e-09!29;UBERON:0001893!1.80e-09!29;UBERON:0000956!1.60e-08!21;UBERON:0001869!1.60e-08!21;UBERON:0000203!1.60e-08!21;UBERON:0002619!1.49e-07!17;UBERON:0002021!3.19e-07!10;UBERON:0000411!3.19e-07!10;UBERON:0001950!3.19e-07!10;UBERON:0000064!3.19e-07!99;UBERON:0002346!3.49e-07!71;UBERON:0003075!3.49e-07!71;UBERON:0007284!3.49e-07!71;UBERON:0003056!7.43e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.26e-19,75;UBERON:0001017,3.06e-18,73;UBERON:0004121,1.32e-15,95;UBERON:0000924,1.32e-15,95;UBERON:0006601,1.32e-15,95;UBERON:0001049,4.41e-13,52;UBERON:0005068,4.41e-13,52;UBERON:0006241,4.41e-13,52;UBERON:0007135,4.41e-13,52;UBERON:0000073,6.15e-13,54;UBERON:0002020,1.08e-11,34;UBERON:0003080,4.43e-11,40;UBERON:0000955,4.77e-11,47;UBERON:0006238,4.77e-11,47;UBERON:0002780,5.23e-11,39;UBERON:0001890,5.23e-11,39;UBERON:0006240,5.23e-11,39;UBERON:0002616,1.13e-10,46;UBERON:0003528,1.27e-09,29;UBERON:0002791,1.27e-09,29;UBERON:0001893,1.27e-09,29;UBERON:0010371,4.19e-09,73;UBERON:0000956,1.33e-08,21;UBERON:0001869,1.33e-08,21;UBERON:0000203,1.33e-08,21;UBERON:0002346,2.97e-08,64;UBERON:0003075,2.97e-08,64;UBERON:0007284,2.97e-08,64;UBERON:0002619,1.41e-07,17;UBERON:0002021,1.63e-07,10;UBERON:0000411,1.63e-07,10;UBERON:0001950,1.63e-07,10;UBERON:0003056,2.10e-07,49|phase1_expression=2.24208385946712,2.09385244583617,1.81999695755814,1.20985684522732,2.00358291978539,2.51818907867835,2.56973904655078,2.32421982194837,10.2775767170717,9.59664557920173,3.08192342805909,2.23362045186942,1.36960583944965,1.04904482902797,0.666219523631325,0.809901069559304,0,1.57731082679119,1.7824876368746,1.69755860719212,2.12608225377674,0.992909512008853,0.522399578277871,3.35984087866154,3.21172993494038,4.01962374880514,0.86152399231815,3.23206849028834,3.42042155021473,4.03248207615889,3.76941868114018,2.54012269383853,3.07532393792285,0,0.866554859253824,0.664938581433969,0.408338712524738,1.25559489221072,1.5626706890476,2.61761871986899,1.76469446409304,2.04913645487534,2.42755176515577,0.881277725829041,0.912392380975631,0.550640256485045,3.9119567217402,1.96222640742402,7.24964403023757,4.27745777963423,1.53985063787899,2.87505128729943,1.51004345451963,2.17608642603403,0.672187598284928,4.11615097657515,1.71920063963254,2.57836046138721,4.04632921719196,4.23192783417626,1.90149421051854,1.35537812827653,1.77858959222228,1.7997994345628,1.97773272513395,4.2628806896766,9.88680364710736,18.4424786554346,1.76272340924412,1.89008313664367,2.94454945891935,4.57041575046086,5.07997644188711,1.10241719293459,1.34183659425531,0.919218786610021,0,4.21368215681119,2.91852413186863,3.29715719325485,4.02545631850602,1.56274011167028,2.51264699101243,1.12552522006336,2.90316670775939,2.35702868378934,2.98980529678116,2.42319279572891,13.4792624133068,8.08615693142605,1.15945795480671,0.860423876981386,0,2.69851595818909,0.649776417447669,0.448026887097336,0.842666520790511,1.02258193546835,0.519572009205738,0.35333957451034,1.40843419776681,1.28326477414318,0,0,2.16491041011214,3.29367825117628,2.02209778005913,1.37020655662872,1.03575153458869,1.48442139064825,0.867426633830679,2.43572382649713,1.15307748628029,1.20578112442098,1.29347577849275,0.502666365318702,2.96633961281249,0.86759614151947,0,1.13236794963186,0.441683036920787,0.484875253135222,7.45567044872489,0.878342391034642,1.04723353406728,0.766371165625774,1.43778149407104,1.19980546198682,0.762421362438388,1.79748767285787,1.37250180845588,2.01046963380583,6.25767552692195,2.30143911597297,3.53239675751252,3.24482526135515,1.42575109390443,1.11966273549084,2.52722758433675,0.210441855886474,1.04096354370163,1.60931473103431,0.360124259610698,1.20563854268572,1.29269348387523,0.512454881139399,0.562210347358373,0.517406741478031,1.72454394346274,0.945530400839096,0.703804496655795,1.7535658594206,0.834141747676794,1.0447564995665,0.411564272815887,1.19420560091096,0,0.514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| ||
|EntrezGene=26394 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=20bp_to_ENSMUST00000145350_5end | |||
|description=CAGE_peak_2_at_Lypla2_5end | |||
|id=chr4:135528463..135528482,- | |||
|ontology_enrichment_celltype=CL:0002319!2.66e-10!43;CL:0000221!3.36e-10!44;CL:0000133!3.36e-10!44;CL:0000055!4.03e-09!50;CL:0002321!9.00e-07!70;CL:0000220!9.00e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.80e-10,43;CL:0000221,2.27e-10,44;CL:0000133,2.27e-10,44;CL:0002321,2.67e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.10e-19!75;UBERON:0001016!2.10e-19!75;UBERON:0001017!4.58e-18!73;UBERON:0005743!4.58e-18!73;UBERON:0004121!5.58e-14!102;UBERON:0000924!5.58e-14!102;UBERON:0006601!5.58e-14!102;UBERON:0001049!4.44e-13!52;UBERON:0005068!4.44e-13!52;UBERON:0006241!4.44e-13!52;UBERON:0007135!4.44e-13!52;UBERON:0002020!1.89e-11!34;UBERON:0000955!4.62e-11!50;UBERON:0006238!4.62e-11!50;UBERON:0003080!5.43e-11!40;UBERON:0002780!6.33e-11!39;UBERON:0001890!6.33e-11!39;UBERON:0006240!6.33e-11!39;UBERON:0002616!1.06e-10!49;UBERON:0002791!1.80e-09!29;UBERON:0003528!1.80e-09!29;UBERON:0001893!1.80e-09!29;UBERON:0000956!1.60e-08!21;UBERON:0001869!1.60e-08!21;UBERON:0000203!1.60e-08!21;UBERON:0002619!1.49e-07!17;UBERON:0002021!3.19e-07!10;UBERON:0000411!3.19e-07!10;UBERON:0001950!3.19e-07!10;UBERON:0000064!3.19e-07!99;UBERON:0002346!3.49e-07!71;UBERON:0003075!3.49e-07!71;UBERON:0007284!3.49e-07!71;UBERON:0003056!7.43e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.26e-19,75;UBERON:0001017,3.06e-18,73;UBERON:0004121,1.32e-15,95;UBERON:0000924,1.32e-15,95;UBERON:0006601,1.32e-15,95;UBERON:0001049,4.41e-13,52;UBERON:0005068,4.41e-13,52;UBERON:0006241,4.41e-13,52;UBERON:0007135,4.41e-13,52;UBERON:0000073,6.15e-13,54;UBERON:0002020,1.08e-11,34;UBERON:0003080,4.43e-11,40;UBERON:0000955,4.77e-11,47;UBERON:0006238,4.77e-11,47;UBERON:0002780,5.23e-11,39;UBERON:0001890,5.23e-11,39;UBERON:0006240,5.23e-11,39;UBERON:0002616,1.13e-10,46;UBERON:0003528,1.27e-09,29;UBERON:0002791,1.27e-09,29;UBERON:0001893,1.27e-09,29;UBERON:0010371,4.19e-09,73;UBERON:0000956,1.33e-08,21;UBERON:0001869,1.33e-08,21;UBERON:0000203,1.33e-08,21;UBERON:0002346,2.97e-08,64;UBERON:0003075,2.97e-08,64;UBERON:0007284,2.97e-08,64;UBERON:0002619,1.41e-07,17;UBERON:0002021,1.63e-07,10;UBERON:0000411,1.63e-07,10;UBERON:0001950,1.63e-07,10;UBERON:0003056,2.10e-07,49 | |||
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| |||
|short_description=p2@Lypla2 | |||
}} |
Revision as of 04:07, 14 September 2013
Short description: | p2@Lypla2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lypla2_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_ENSMUST00000145350_5end |
EntrezGene: | Lypla2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.80e-10 | 43 |
ectodermal cell | 2.27e-10 | 44 |
neurectodermal cell | 2.27e-10 | 44 |
embryonic cell | 2.67e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.26e-19 | 75 |
central nervous system | 3.06e-18 | 73 |
ectoderm-derived structure | 1.32e-15 | 95 |
ectoderm | 1.32e-15 | 95 |
presumptive ectoderm | 1.32e-15 | 95 |
neural tube | 4.41e-13 | 52 |
neural rod | 4.41e-13 | 52 |
future spinal cord | 4.41e-13 | 52 |
neural keel | 4.41e-13 | 52 |
regional part of nervous system | 6.15e-13 | 54 |
gray matter | 1.08e-11 | 34 |
anterior neural tube | 4.43e-11 | 40 |
brain | 4.77e-11 | 47 |
future brain | 4.77e-11 | 47 |
regional part of forebrain | 5.23e-11 | 39 |
forebrain | 5.23e-11 | 39 |
future forebrain | 5.23e-11 | 39 |
regional part of brain | 1.13e-10 | 46 |
brain grey matter | 1.27e-09 | 29 |
regional part of telencephalon | 1.27e-09 | 29 |
telencephalon | 1.27e-09 | 29 |
ecto-epithelium | 4.19e-09 | 73 |
cerebral cortex | 1.33e-08 | 21 |
cerebral hemisphere | 1.33e-08 | 21 |
pallium | 1.33e-08 | 21 |
neurectoderm | 2.97e-08 | 64 |
neural plate | 2.97e-08 | 64 |
presumptive neural plate | 2.97e-08 | 64 |
regional part of cerebral cortex | 1.41e-07 | 17 |
occipital lobe | 1.63e-07 | 10 |
visual cortex | 1.63e-07 | 10 |
neocortex | 1.63e-07 | 10 |
pre-chordal neural plate | 2.10e-07 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.