FFCP PHASE1:Mm9::chr7:11080671..11080750,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22775|HGNC=|MCL_coexpression_id=399|UniProt=Q80YP6|association_with_transcript=0bp_to_ENSMUST00000032551,NM_009577,uc009fdf.1_5end|description=CAGE_peak_1_at_Zik1_5end|id=chr7:11080671..11080750,-|ontology_enrichment_celltype=CL:0000540!1.54e-11!33;CL:0000047!1.54e-11!33;CL:0000031!1.54e-11!33;CL:0000404!1.54e-11!33;CL:0000393!1.99e-09!39;CL:0000211!1.99e-09!39;CL:0000117!2.46e-09!23;CL:0000337!2.46e-09!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.45e-11,33;CL:0000047,1.45e-11,33;CL:0000031,1.45e-11,33;CL:0000404,1.45e-11,33;CL:0000393,1.90e-09,39;CL:0000211,1.90e-09,39;CL:0000117,2.35e-09,23;CL:0000337,2.35e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.28e-17!73;UBERON:0005743!3.28e-17!73;UBERON:0002346!4.03e-17!71;UBERON:0003075!4.03e-17!71;UBERON:0007284!4.03e-17!71;UBERON:0000073!5.70e-17!75;UBERON:0001016!5.70e-17!75;UBERON:0003056!7.64e-17!49;UBERON:0000033!1.51e-16!63;UBERON:0000955!5.76e-15!50;UBERON:0006238!5.76e-15!50;UBERON:0002616!2.06e-14!49;UBERON:0001049!2.31e-14!52;UBERON:0005068!2.31e-14!52;UBERON:0006241!2.31e-14!52;UBERON:0007135!2.31e-14!52;UBERON:0004121!2.83e-14!102;UBERON:0000924!2.83e-14!102;UBERON:0006601!2.83e-14!102;UBERON:0003080!5.42e-14!40;UBERON:0002780!1.60e-13!39;UBERON:0001890!1.60e-13!39;UBERON:0006240!1.60e-13!39;UBERON:0000153!1.79e-13!94;UBERON:0002020!1.83e-12!34;UBERON:0002791!7.86e-12!29;UBERON:0003528!7.86e-12!29;UBERON:0001893!7.86e-12!29;UBERON:0007811!1.87e-11!86;UBERON:0000956!1.15e-08!21;UBERON:0001869!1.15e-08!21;UBERON:0000203!1.15e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.20e-18,64;UBERON:0003075,2.20e-18,64;UBERON:0007284,2.20e-18,64;UBERON:0001017,3.23e-17,73;UBERON:0001016,5.60e-17,75;UBERON:0003056,7.61e-17,49;UBERON:0000073,2.90e-15,54;UBERON:0010371,8.43e-15,73;UBERON:0004121,1.31e-14,95;UBERON:0000924,1.31e-14,95;UBERON:0006601,1.31e-14,95;UBERON:0010314,2.26e-14,92;UBERON:0001049,2.32e-14,52;UBERON:0005068,2.32e-14,52;UBERON:0006241,2.32e-14,52;UBERON:0007135,2.32e-14,52;UBERON:0000955,4.50e-14,47;UBERON:0006238,4.50e-14,47;UBERON:0003080,5.49e-14,40;UBERON:0002616,1.59e-13,46;UBERON:0002780,1.62e-13,39;UBERON:0001890,1.62e-13,39;UBERON:0006240,1.62e-13,39;UBERON:0002020,1.87e-12,34;UBERON:0003528,8.09e-12,29;UBERON:0002791,8.09e-12,29;UBERON:0001893,8.09e-12,29;UBERON:0000956,1.20e-08,21;UBERON:0001869,1.20e-08,21;UBERON:0000203,1.20e-08,21|phase1_expression=11.3705681444404,0,0,0,0,0.503637815735669,0.233612640595526,2.84071311571468,1.267098499365,0.468129052643987,1.02730780935303,2.6324812468461,1.54080656938085,1.74840804837995,2.99798785634096,2.63217847606774,2.79824751251259,1.57731082679119,1.50825876966313,1.27316895539409,5.44277056966847,6.7517846816602,9.14199261986274,0.799962113967033,0.91763712426868,0,0.86152399231815,0.646413698057667,0.190023419456374,0.756090389279792,0.221730510655305,12.065582795733,10.4561013889377,0,0.577703239502549,0.664938581433969,0.612508068787107,0,0.7813353445238,0,0,0,0,5.5394599909254,4.8660926985367,6.24058957349717,2.34717403304412,2.39827672018491,0.659058548203415,1.55543919259427,2.2397827460058,1.43752564364972,1.00669563634642,0,0.672187598284928,3.8588915405392,3.43840127926508,1.54701627683233,17.8038485556446,17.9856932952491,9.50747105259269,1.35537812827653,7.11435836888911,0,1.97773272513395,0.7104801149461,2.39680088414724,1.53687322128622,27.8925057109805,17.6857779214515,18.5085965989216,4.57041575046086,4.8591079009355,32.2150801935329,18.5940213775379,24.8189072384706,13.2139057199266,10.7257363991558,10.2916377281683,19.5191705840687,23.9697626238313,23.4411016750542,7.2587579740359,12.380777420697,11.1542720877071,12.0797720044204,17.6540884190888,19.9447407033072,6.05809546665472,5.51672388779534,1.15945795480671,2.58127163094416,2.719885334831,1.61910957491345,0.649776417447669,0.448026887097336,3.23022166303029,6.98764322570037,5.71529210126311,6.00677276667578,7.04217098883402,5.13305909657271,0,0,2.59789249213457,2.02687892380079,3.0331466700887,1.94112595522402,1.29468941823586,2.9688427812965,8.84775166507293,6.69824052286711,5.76538743140146,6.0289056221049,6.93773372100658,2.63899841792318,0.988779870937496,2.74738778147832,1.76922110389975,3.88240439873782,3.3126227769059,3.39412677194655,1.86391761218122,9.07620470735796,13.823482649688,1.02182822083437,2.75574786363617,0.599902730993408,1.77898317902291,15.4284358586967,11.4375150704657,36.3141077606178,18.7730265807659,15.3429274398198,12.8828587626927,14.7639549391659,8.96186401882783,1.61729061793121,2.27450482590307,2.94618598241064,27.3252930221678,24.5995251743816,23.7682011343061,18.3859877759572,16.1246502988647,19.4732854832972,12.1812241927647,3.62184719034622,27.1615671095381,27.7985937846694,23.2255483896412,13.5901354105096,15.0145514581823,6.96504333044333,8.84863186554157,11.3449532086541,0.702213187313235,2.31613116403244,0.852490498186778,8.69928244649108,14.3060896588469,9.18316513451176,6.39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| ||
|EntrezGene=22775 | |||
|HGNC= | |||
|MCL_coexpression_id=399 | |||
|UniProt=Q80YP6 | |||
|association_with_transcript=0bp_to_ENSMUST00000032551,NM_009577,uc009fdf.1_5end | |||
|description=CAGE_peak_1_at_Zik1_5end | |||
|id=chr7:11080671..11080750,- | |||
|ontology_enrichment_celltype=CL:0000540!1.54e-11!33;CL:0000047!1.54e-11!33;CL:0000031!1.54e-11!33;CL:0000404!1.54e-11!33;CL:0000393!1.99e-09!39;CL:0000211!1.99e-09!39;CL:0000117!2.46e-09!23;CL:0000337!2.46e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.45e-11,33;CL:0000047,1.45e-11,33;CL:0000031,1.45e-11,33;CL:0000404,1.45e-11,33;CL:0000393,1.90e-09,39;CL:0000211,1.90e-09,39;CL:0000117,2.35e-09,23;CL:0000337,2.35e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.28e-17!73;UBERON:0005743!3.28e-17!73;UBERON:0002346!4.03e-17!71;UBERON:0003075!4.03e-17!71;UBERON:0007284!4.03e-17!71;UBERON:0000073!5.70e-17!75;UBERON:0001016!5.70e-17!75;UBERON:0003056!7.64e-17!49;UBERON:0000033!1.51e-16!63;UBERON:0000955!5.76e-15!50;UBERON:0006238!5.76e-15!50;UBERON:0002616!2.06e-14!49;UBERON:0001049!2.31e-14!52;UBERON:0005068!2.31e-14!52;UBERON:0006241!2.31e-14!52;UBERON:0007135!2.31e-14!52;UBERON:0004121!2.83e-14!102;UBERON:0000924!2.83e-14!102;UBERON:0006601!2.83e-14!102;UBERON:0003080!5.42e-14!40;UBERON:0002780!1.60e-13!39;UBERON:0001890!1.60e-13!39;UBERON:0006240!1.60e-13!39;UBERON:0000153!1.79e-13!94;UBERON:0002020!1.83e-12!34;UBERON:0002791!7.86e-12!29;UBERON:0003528!7.86e-12!29;UBERON:0001893!7.86e-12!29;UBERON:0007811!1.87e-11!86;UBERON:0000956!1.15e-08!21;UBERON:0001869!1.15e-08!21;UBERON:0000203!1.15e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.20e-18,64;UBERON:0003075,2.20e-18,64;UBERON:0007284,2.20e-18,64;UBERON:0001017,3.23e-17,73;UBERON:0001016,5.60e-17,75;UBERON:0003056,7.61e-17,49;UBERON:0000073,2.90e-15,54;UBERON:0010371,8.43e-15,73;UBERON:0004121,1.31e-14,95;UBERON:0000924,1.31e-14,95;UBERON:0006601,1.31e-14,95;UBERON:0010314,2.26e-14,92;UBERON:0001049,2.32e-14,52;UBERON:0005068,2.32e-14,52;UBERON:0006241,2.32e-14,52;UBERON:0007135,2.32e-14,52;UBERON:0000955,4.50e-14,47;UBERON:0006238,4.50e-14,47;UBERON:0003080,5.49e-14,40;UBERON:0002616,1.59e-13,46;UBERON:0002780,1.62e-13,39;UBERON:0001890,1.62e-13,39;UBERON:0006240,1.62e-13,39;UBERON:0002020,1.87e-12,34;UBERON:0003528,8.09e-12,29;UBERON:0002791,8.09e-12,29;UBERON:0001893,8.09e-12,29;UBERON:0000956,1.20e-08,21;UBERON:0001869,1.20e-08,21;UBERON:0000203,1.20e-08,21 | |||
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| |||
|short_description=p1@Zik1 | |||
}} |
Revision as of 11:22, 14 September 2013
Short description: | p1@Zik1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zik1_5end |
Coexpression cluster: | MCL_coexpression_mm9:399 |
Association with transcript: | 0bp_to_ENSMUST00000032551, NM_009577, uc009fdf.1_5end |
EntrezGene: | Zik1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.45e-11 | 33 |
neuronal stem cell | 1.45e-11 | 33 |
neuroblast | 1.45e-11 | 33 |
electrically signaling cell | 1.45e-11 | 33 |
electrically responsive cell | 1.90e-09 | 39 |
electrically active cell | 1.90e-09 | 39 |
CNS neuron (sensu Vertebrata) | 2.35e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.35e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.20e-18 | 64 |
neural plate | 2.20e-18 | 64 |
presumptive neural plate | 2.20e-18 | 64 |
central nervous system | 3.23e-17 | 73 |
nervous system | 5.60e-17 | 75 |
pre-chordal neural plate | 7.61e-17 | 49 |
regional part of nervous system | 2.90e-15 | 54 |
ecto-epithelium | 8.43e-15 | 73 |
ectoderm-derived structure | 1.31e-14 | 95 |
ectoderm | 1.31e-14 | 95 |
presumptive ectoderm | 1.31e-14 | 95 |
structure with developmental contribution from neural crest | 2.26e-14 | 92 |
neural tube | 2.32e-14 | 52 |
neural rod | 2.32e-14 | 52 |
future spinal cord | 2.32e-14 | 52 |
neural keel | 2.32e-14 | 52 |
brain | 4.50e-14 | 47 |
future brain | 4.50e-14 | 47 |
anterior neural tube | 5.49e-14 | 40 |
regional part of brain | 1.59e-13 | 46 |
regional part of forebrain | 1.62e-13 | 39 |
forebrain | 1.62e-13 | 39 |
future forebrain | 1.62e-13 | 39 |
gray matter | 1.87e-12 | 34 |
brain grey matter | 8.09e-12 | 29 |
regional part of telencephalon | 8.09e-12 | 29 |
telencephalon | 8.09e-12 | 29 |
cerebral cortex | 1.20e-08 | 21 |
cerebral hemisphere | 1.20e-08 | 21 |
pallium | 1.20e-08 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.