FFCP PHASE1:Mm9::chr11:33103589..33103599,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=27140|HGNC=|MCL_coexpression_id=249|UniProt=Q5SQB4|association_with_transcript=-1bp_to_ENSMUST00000037746,NM_019916,uc007ikg.2_5end|description=CAGE_peak_3_at_Tlx3_5end|id=chr11:33103589..33103599,-|ontology_enrichment_celltype=CL:0000540!7.71e-08!33;CL:0000047!7.71e-08!33;CL:0000031!7.71e-08!33;CL:0000404!7.71e-08!33;CL:0002612!5.18e-07!3;CL:0002319!6.82e-07!43|ontology_enrichment_celltype_v019_2=CL:0002612,1.16e-30,3;CL:0002611,1.59e-20,2;CL:0000117,5.61e-11,23;CL:0000337,5.61e-11,23;CL:0000540,1.11e-07,33;CL:0000047,1.11e-07,33;CL:0000031,1.11e-07,33;CL:0000404,1.11e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002240!2.91e-12!6;UBERON:0005174!2.91e-12!6;UBERON:0001137!2.91e-12!6;UBERON:0003076!9.24e-12!12;UBERON:0003057!9.24e-12!12;UBERON:0001948!1.57e-10!5;UBERON:0002315!1.57e-10!5;UBERON:0000010!9.48e-09!11;UBERON:0002342!2.13e-07!10;UBERON:0005062!2.13e-07!10;UBERON:0002257!5.18e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0002240,6.90e-59,6;UBERON:0005174,6.90e-59,6;UBERON:0001137,6.90e-59,6;UBERON:0001948,1.54e-49,5;UBERON:0002315,1.54e-49,5;UBERON:0002257,1.16e-30,3;UBERON:0003076,1.43e-29,12;UBERON:0003057,1.43e-29,12;UBERON:0002256,1.59e-20,2;UBERON:0000489,6.01e-17,21;UBERON:0003103,2.93e-08,43;UBERON:0002020,1.86e-07,34;UBERON:0001049,8.31e-07,52;UBERON:0005068,8.31e-07,52;UBERON:0006241,8.31e-07,52;UBERON:0007135,8.31e-07,52|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,2.28520787523043,2.42955395046775,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0,3.24091444021034,2.70506193518296,5.77838282058432,0.227178579999552,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.520455980298408,0.304465478312141,0.461230994512117,0.150722640552623,0.23517741427141,0,0,0,0,0,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229902104433473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639864751605702,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0,0,0,0.631016438832513,0,0.430846795465598,0.477937595905104,0.445597348164788,0,0,0.584511715822624,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658196082408484,0.304464949114599,0,0,0,0,0,0,0,0,0,1.8542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443971906748129,0,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14166082342594,0.798049746802062,1.02440163452481,0.243106717068294,1.04806581313991,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0,0.377252682772152,0.187283014939765,0.128050304809739,0.229741875822453,0,0,0,0,0.441596760403192,0.342869252385415,0.177475806159338,0,0,0,0,0.182927972872773,0.263069711437843,0,0,0.237270036248348,0.197008964751127,0,0,0,0,0,0.429742108096597,0.382576664137687,0.220591419119515,0.231867835620421|short_description=p3@Tlx3}} | ||
|EntrezGene=27140 | |||
|HGNC= | |||
|MCL_coexpression_id=249 | |||
|UniProt=Q5SQB4 | |||
|association_with_transcript=-1bp_to_ENSMUST00000037746,NM_019916,uc007ikg.2_5end | |||
|description=CAGE_peak_3_at_Tlx3_5end | |||
|id=chr11:33103589..33103599,- | |||
|ontology_enrichment_celltype=CL:0000540!7.71e-08!33;CL:0000047!7.71e-08!33;CL:0000031!7.71e-08!33;CL:0000404!7.71e-08!33;CL:0002612!5.18e-07!3;CL:0002319!6.82e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002612,1.16e-30,3;CL:0002611,1.59e-20,2;CL:0000117,5.61e-11,23;CL:0000337,5.61e-11,23;CL:0000540,1.11e-07,33;CL:0000047,1.11e-07,33;CL:0000031,1.11e-07,33;CL:0000404,1.11e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002240!2.91e-12!6;UBERON:0005174!2.91e-12!6;UBERON:0001137!2.91e-12!6;UBERON:0003076!9.24e-12!12;UBERON:0003057!9.24e-12!12;UBERON:0001948!1.57e-10!5;UBERON:0002315!1.57e-10!5;UBERON:0000010!9.48e-09!11;UBERON:0002342!2.13e-07!10;UBERON:0005062!2.13e-07!10;UBERON:0002257!5.18e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,6.90e-59,6;UBERON:0005174,6.90e-59,6;UBERON:0001137,6.90e-59,6;UBERON:0001948,1.54e-49,5;UBERON:0002315,1.54e-49,5;UBERON:0002257,1.16e-30,3;UBERON:0003076,1.43e-29,12;UBERON:0003057,1.43e-29,12;UBERON:0002256,1.59e-20,2;UBERON:0000489,6.01e-17,21;UBERON:0003103,2.93e-08,43;UBERON:0002020,1.86e-07,34;UBERON:0001049,8.31e-07,52;UBERON:0005068,8.31e-07,52;UBERON:0006241,8.31e-07,52;UBERON:0007135,8.31e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0,0,0,0,0,0,0,0,0,0,0,2.28520787523043,2.42955395046775,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0,3.24091444021034,2.70506193518296,5.77838282058432,0.227178579999552,0.151143120213571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.520455980298408,0.304465478312141,0.461230994512117,0.150722640552623,0.23517741427141,0,0,0,0,0,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229902104433473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639864751605702,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0,0,0,0.631016438832513,0,0.430846795465598,0.477937595905104,0.445597348164788,0,0,0.584511715822624,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658196082408484,0.304464949114599,0,0,0,0,0,0,0,0,0,1.8542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443971906748129,0,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14166082342594,0.798049746802062,1.02440163452481,0.243106717068294,1.04806581313991,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0,0.377252682772152,0.187283014939765,0.128050304809739,0.229741875822453,0,0,0,0,0.441596760403192,0.342869252385415,0.177475806159338,0,0,0,0,0.182927972872773,0.263069711437843,0,0,0.237270036248348,0.197008964751127,0,0,0,0,0,0.429742108096597,0.382576664137687,0.220591419119515,0.231867835620421 | |||
|short_description=p3@Tlx3 | |||
}} |
Revision as of 19:31, 12 September 2013
Short description: | p3@Tlx3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tlx3_5end |
Coexpression cluster: | MCL_coexpression_mm9:249 |
Association with transcript: | -1bp_to_ENSMUST00000037746, NM_019916, uc007ikg.2_5end |
EntrezGene: | Tlx3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 1.16e-30 | 3 |
neuron of the dorsal spinal cord | 1.59e-20 | 2 |
CNS neuron (sensu Vertebrata) | 5.61e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.61e-11 | 23 |
neuron | 1.11e-07 | 33 |
neuronal stem cell | 1.11e-07 | 33 |
neuroblast | 1.11e-07 | 33 |
electrically signaling cell | 1.11e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 6.90e-59 | 6 |
dorsal region element | 6.90e-59 | 6 |
dorsum | 6.90e-59 | 6 |
regional part of spinal cord | 1.54e-49 | 5 |
gray matter of spinal cord | 1.54e-49 | 5 |
ventral horn of spinal cord | 1.16e-30 | 3 |
posterior neural tube | 1.43e-29 | 12 |
chordal neural plate | 1.43e-29 | 12 |
dorsal horn of spinal cord | 1.59e-20 | 2 |
cavitated compound organ | 6.01e-17 | 21 |
compound organ | 2.93e-08 | 43 |
gray matter | 1.86e-07 | 34 |
neural tube | 8.31e-07 | 52 |
neural rod | 8.31e-07 | 52 |
future spinal cord | 8.31e-07 | 52 |
neural keel | 8.31e-07 | 52 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.