FFCP PHASE1:Mm9::chr12:79582304..79582310,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=5|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:79582304..79582310,+|id=chr12:79582304..79582310,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000117,2.48e-18,23;CL:0000337,2.48e-18,23;CL:0000540,1.83e-12,33;CL:0000047,1.83e-12,33;CL:0000031,1.83e-12,33;CL:0000404,1.83e-12,33;CL:0002611,6.40e-12,2;CL:0000393,2.22e-10,39;CL:0000211,2.22e-10,39;CL:0002319,2.60e-09,43;CL:0000221,4.48e-09,44;CL:0000133,4.48e-09,44;CL:0002612,1.84e-08,3;CL:0002610,2.58e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0001948,4.72e-18,5;UBERON:0002315,4.72e-18,5;UBERON:0002240,4.31e-15,6;UBERON:0005174,4.31e-15,6;UBERON:0001137,4.31e-15,6;UBERON:0000073,3.28e-13,54;UBERON:0002020,4.58e-12,34;UBERON:0002256,6.40e-12,2;UBERON:0003076,1.25e-11,12;UBERON:0003057,1.25e-11,12;UBERON:0001049,2.17e-09,52;UBERON:0005068,2.17e-09,52;UBERON:0006241,2.17e-09,52;UBERON:0007135,2.17e-09,52;UBERON:0001017,2.38e-09,73;UBERON:0001016,4.67e-09,75;UBERON:0002257,1.84e-08,3;UBERON:0004684,2.58e-08,3;UBERON:0002275,2.58e-08,3;UBERON:0002346,2.21e-07,64;UBERON:0003075,2.21e-07,64;UBERON:0007284,2.21e-07,64;UBERON:0004121,8.56e-07,95;UBERON:0000924,8.56e-07,95;UBERON:0006601,8.56e-07,95|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0.234064526321993,0.68487187290202,0.319088635981346,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.510259740906419,0.198581902401771,0.261199789138935,0,0.22940928106717,0,0,0,0.190023419456374,0,0.221730510655305,1.27006134691926,0,0,0.866554859253824,0.166234645358492,0.612508068787107,0.418531630736908,0,0,0,0,0,0.125896817975577,0.304130793658544,0,0,0,0.219686182734472,0,0,0,0.167782606057736,0,0,0,0.286533439938757,0,0,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,0.207379224616955,1.35005938331691,0.420649922702764,1.71390590642282,1.10434270475807,0,0.575072826109418,0,1.10115880999389,2.042997409363,0.768032666281217,0.263772575460388,1.00636407962651,0,1.67509799400829,0,0.45839474333043,1.17851434189467,3.13217697758026,0.186399445825301,0.075726193333184,0,0,0,0,1.61910957491345,0.649776417447669,0,0.561777680527007,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0,0.505524445014783,0.11418387971906,0,0,0.173485326766136,0.304465478312141,0,0,0.117588707135705,0.125666591329675,0,0.144599356919912,0.884610551949874,0.323533699894818,0.220841518460394,0.484875253135222,0,0,1.8850203613211,0,0.239630249011841,0,0.127070227073065,0.149790639404823,0.915001205637253,0.251308704225729,0,0.255715457330331,0.20778804455956,0.324482526135515,0,0,0,0.841767423545896,0.130120442962704,0,0,0.30140963567143,0.136072998302656,0.768682321709099,0.187403449119458,0.776110112217047,0.215567992932842,0,0,0,0,0,0,0,0,0,0.852490498186778,0,0.234526059981096,0.180062061461015,0.23674473558521,0,0.462801338662135,0.232533944750408,0,0.116765342367169,0.16455984991348,0.32833492815819,0.0810688095458557,0,0.878200461164203,0.134206418760372,0,0.205809224758569,0,0,0.213288250535234,0.232236671860439,0.257734922644187,0.403367049246685,0,0,0,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.189667900953082,0.114248512609729,0,0,0.581857461502877,0.210407459670956,0.252946148497029,0.590440591918409,0.470996183524124,0.370191491765402,0.592905254174298,0.166845105716094,0,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,8.62609239164127,0,0.312037673114561,0.505157755894224,0.358794827043824,1.4473305640901,0,0,0.162964976442026,0.169745085775188,0,0.167506257441816,0,0.390267295715598,0.157635144106191,0,0.478364305972461,0,0,0.144649058581512,0,0,0.491764273019036,0.551873492609465,0.160550589987792,0.234423373184406,0.163934945376675,0.252470927204373,0,0,0.430846795465598,0.238968797952552,0.222798674082394,0,0.404810701674894,0.292255857911312,0,0.321321316421807,0,0.178065603667255,0.162886959353576,0,0,0.242780636154981,0.604647113929502,0.377210159511796,0,0,0,0,0.356497378384721,0.632073515871632,0,0,0,0,0.129358683782755,0,0,0,0.164549020602121,0,0.469343416127421,0,0,0,0.322928853391811,0,0.119372344003136,0,0.291480836629851,0.556275906031529,0,0,0,0.188368457004691,0.136694227721025,0.228778173206523,0.169978429993855,0,0.138199973804424,0,0.158167996790568,0.203319467126849,0.216010681643603,0.627264888043406,0,0,0.0826534557253359,0.26175594198403,0,0,0,0.149516546043979,0.165458490457098,0,0,0,0.117357238645754,0.13020438484395,0,0.241584120826006,0.576060012515731,0,0.202725215290164,0.102710957164827,0.389762468933385,0,0.198681354781265,0,0.147689527174577,0.100966449948148,0,0.100826185136841,0.0974578807397524,0.192423683280659,0.116876902181569,0,0,0.179427713218951,0,0,0,0.183151624267265,0,0,1.12950368523413,0.460325236507177,0,1.71853182343688,0,0,0,0,0,0.51776031175182,0.415149390336707,0.399024873401031,0.170733605754134,0.2431067170682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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=5 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:79582304..79582310,+ | |||
|id=chr12:79582304..79582310,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.48e-18,23;CL:0000337,2.48e-18,23;CL:0000540,1.83e-12,33;CL:0000047,1.83e-12,33;CL:0000031,1.83e-12,33;CL:0000404,1.83e-12,33;CL:0002611,6.40e-12,2;CL:0000393,2.22e-10,39;CL:0000211,2.22e-10,39;CL:0002319,2.60e-09,43;CL:0000221,4.48e-09,44;CL:0000133,4.48e-09,44;CL:0002612,1.84e-08,3;CL:0002610,2.58e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,4.72e-18,5;UBERON:0002315,4.72e-18,5;UBERON:0002240,4.31e-15,6;UBERON:0005174,4.31e-15,6;UBERON:0001137,4.31e-15,6;UBERON:0000073,3.28e-13,54;UBERON:0002020,4.58e-12,34;UBERON:0002256,6.40e-12,2;UBERON:0003076,1.25e-11,12;UBERON:0003057,1.25e-11,12;UBERON:0001049,2.17e-09,52;UBERON:0005068,2.17e-09,52;UBERON:0006241,2.17e-09,52;UBERON:0007135,2.17e-09,52;UBERON:0001017,2.38e-09,73;UBERON:0001016,4.67e-09,75;UBERON:0002257,1.84e-08,3;UBERON:0004684,2.58e-08,3;UBERON:0002275,2.58e-08,3;UBERON:0002346,2.21e-07,64;UBERON:0003075,2.21e-07,64;UBERON:0007284,2.21e-07,64;UBERON:0004121,8.56e-07,95;UBERON:0000924,8.56e-07,95;UBERON:0006601,8.56e-07,95 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0.234064526321993,0.68487187290202,0.319088635981346,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.510259740906419,0.198581902401771,0.261199789138935,0,0.22940928106717,0,0,0,0.190023419456374,0,0.221730510655305,1.27006134691926,0,0,0.866554859253824,0.166234645358492,0.612508068787107,0.418531630736908,0,0,0,0,0,0.125896817975577,0.304130793658544,0,0,0,0.219686182734472,0,0,0,0.167782606057736,0,0,0,0.286533439938757,0,0,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,0.207379224616955,1.35005938331691,0.420649922702764,1.71390590642282,1.10434270475807,0,0.575072826109418,0,1.10115880999389,2.042997409363,0.768032666281217,0.263772575460388,1.00636407962651,0,1.67509799400829,0,0.45839474333043,1.17851434189467,3.13217697758026,0.186399445825301,0.075726193333184,0,0,0,0,1.61910957491345,0.649776417447669,0,0.561777680527007,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0,0.505524445014783,0.11418387971906,0,0,0.173485326766136,0.304465478312141,0,0,0.117588707135705,0.125666591329675,0,0.144599356919912,0.884610551949874,0.323533699894818,0.220841518460394,0.484875253135222,0,0,1.8850203613211,0,0.239630249011841,0,0.127070227073065,0.149790639404823,0.915001205637253,0.251308704225729,0,0.255715457330331,0.20778804455956,0.324482526135515,0,0,0,0.841767423545896,0.130120442962704,0,0,0.30140963567143,0.136072998302656,0.768682321709099,0.187403449119458,0.776110112217047,0.215567992932842,0,0,0,0,0,0,0,0,0,0.852490498186778,0,0.234526059981096,0.180062061461015,0.23674473558521,0,0.462801338662135,0.232533944750408,0,0.116765342367169,0.16455984991348,0.32833492815819,0.0810688095458557,0,0.878200461164203,0.134206418760372,0,0.205809224758569,0,0,0.213288250535234,0.232236671860439,0.257734922644187,0.403367049246685,0,0,0,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.189667900953082,0.114248512609729,0,0,0.581857461502877,0.210407459670956,0.252946148497029,0.590440591918409,0.470996183524124,0.370191491765402,0.592905254174298,0.166845105716094,0,0,0,0,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,8.62609239164127,0,0.312037673114561,0.505157755894224,0.358794827043824,1.4473305640901,0,0,0.162964976442026,0.169745085775188,0,0.167506257441816,0,0.390267295715598,0.157635144106191,0,0.478364305972461,0,0,0.144649058581512,0,0,0.491764273019036,0.551873492609465,0.160550589987792,0.234423373184406,0.163934945376675,0.252470927204373,0,0,0.430846795465598,0.238968797952552,0.222798674082394,0,0.404810701674894,0.292255857911312,0,0.321321316421807,0,0.178065603667255,0.162886959353576,0,0,0.242780636154981,0.604647113929502,0.377210159511796,0,0,0,0,0.356497378384721,0.632073515871632,0,0,0,0,0.129358683782755,0,0,0,0.164549020602121,0,0.469343416127421,0,0,0,0.322928853391811,0,0.119372344003136,0,0.291480836629851,0.556275906031529,0,0,0,0.188368457004691,0.136694227721025,0.228778173206523,0.169978429993855,0,0.138199973804424,0,0.158167996790568,0.203319467126849,0.216010681643603,0.627264888043406,0,0,0.0826534557253359,0.26175594198403,0,0,0,0.149516546043979,0.165458490457098,0,0,0,0.117357238645754,0.13020438484395,0,0.241584120826006,0.576060012515731,0,0.202725215290164,0.102710957164827,0.389762468933385,0,0.198681354781265,0,0.147689527174577,0.100966449948148,0,0.100826185136841,0.0974578807397524,0.192423683280659,0.116876902181569,0,0,0.179427713218951,0,0,0,0.183151624267265,0,0,1.12950368523413,0.460325236507177,0,1.71853182343688,0,0,0,0,0,0.51776031175182,0.415149390336707,0.399024873401031,0.170733605754134,0.243106717068294,0.209613162627982,0,0,0.206035057238894,0,0,0.50695859978048,0,0.37456602987953,0.128050304809739,0.114870937911227,0.476293691283074,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0.476872379894642,0,0.188218760830661,0.169229215783353,0,0,0.271608227691724,0,0,0.197008964751127,0.818462086339379,0,0,0.499621155875892,0,0,0.191288332068843,0,0 | |||
|short_description=p@chr12:79582304..79582310,+ | |||
}} |
Revision as of 23:16, 12 September 2013
Short description: | p@chr12:79582304..79582310, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:79582304..79582310, + |
Coexpression cluster: | MCL_coexpression_mm9:5 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.48e-18 | 23 |
neuroblast (sensu Vertebrata) | 2.48e-18 | 23 |
neuron | 1.83e-12 | 33 |
neuronal stem cell | 1.83e-12 | 33 |
neuroblast | 1.83e-12 | 33 |
electrically signaling cell | 1.83e-12 | 33 |
neuron of the dorsal spinal cord | 6.40e-12 | 2 |
electrically responsive cell | 2.22e-10 | 39 |
electrically active cell | 2.22e-10 | 39 |
neural cell | 2.60e-09 | 43 |
ectodermal cell | 4.48e-09 | 44 |
neurectodermal cell | 4.48e-09 | 44 |
neuron of the ventral spinal cord | 1.84e-08 | 3 |
raphe nuclei neuron | 2.58e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 4.72e-18 | 5 |
gray matter of spinal cord | 4.72e-18 | 5 |
spinal cord | 4.31e-15 | 6 |
dorsal region element | 4.31e-15 | 6 |
dorsum | 4.31e-15 | 6 |
regional part of nervous system | 3.28e-13 | 54 |
gray matter | 4.58e-12 | 34 |
dorsal horn of spinal cord | 6.40e-12 | 2 |
posterior neural tube | 1.25e-11 | 12 |
chordal neural plate | 1.25e-11 | 12 |
neural tube | 2.17e-09 | 52 |
neural rod | 2.17e-09 | 52 |
future spinal cord | 2.17e-09 | 52 |
neural keel | 2.17e-09 | 52 |
central nervous system | 2.38e-09 | 73 |
nervous system | 4.67e-09 | 75 |
ventral horn of spinal cord | 1.84e-08 | 3 |
raphe nuclei | 2.58e-08 | 3 |
reticular formation | 2.58e-08 | 3 |
neurectoderm | 2.21e-07 | 64 |
neural plate | 2.21e-07 | 64 |
presumptive neural plate | 2.21e-07 | 64 |
ectoderm-derived structure | 8.56e-07 | 95 |
ectoderm | 8.56e-07 | 95 |
presumptive ectoderm | 8.56e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.