FFCP PHASE1:Mm9::chr6:87482950..87482959,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=232201|HGNC=|MCL_coexpression_id=36|UniProt=Q8BYW1|association_with_transcript=269bp_to_ENSMUST00000113637,NM_001037727,uc009ctm.1,uc009ctn.1_5end|description=CAGE_peak_6_at_Arhgap25_5end|id=chr6:87482950..87482959,-|ontology_enrichment_celltype=CL:0002031!6.58e-07!25|ontology_enrichment_celltype_v019_2=CL:0002031,1.22e-11,25;CL:0002320,7.88e-09,46;CL:0000134,7.88e-09,46;CL:0000988,8.35e-09,32;CL:0002032,8.35e-09,32;CL:0000037,8.35e-09,32;CL:0000837,8.35e-09,32;CL:0000838,6.23e-08,12;CL:0000738,6.60e-08,17;CL:0002087,6.60e-08,17;CL:0000542,2.62e-07,13;CL:0000051,2.62e-07,13;CL:0000219,2.98e-07,54;CL:0000791,4.35e-07,9;CL:0000789,4.35e-07,9;CL:0002420,4.35e-07,9;CL:0002419,4.35e-07,9;CL:0000790,4.35e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,4.66e-13,3;DOID:4045,4.66e-13,3;DOID:0050686,9.35e-07,6|ontology_enrichment_uberon=UBERON:0002193!1.15e-18!48;UBERON:0002390!6.01e-18!45;UBERON:0003061!6.01e-18!45;UBERON:0002405!3.23e-16!70;UBERON:0004177!4.00e-15!29;UBERON:0005057!8.85e-12!51;UBERON:0002370!7.75e-11!23;UBERON:0000974!7.75e-11!23;UBERON:0004807!7.75e-11!23;UBERON:0005058!7.75e-11!23;UBERON:0003351!7.75e-11!23;UBERON:0009113!7.75e-11!23;UBERON:0003295!7.75e-11!23;UBERON:0009722!7.75e-11!23;UBERON:0005562!7.75e-11!23;UBERON:0007690!7.75e-11!23;UBERON:0006562!3.97e-10!24;UBERON:0003408!3.97e-10!24;UBERON:0001557!3.97e-10!24;UBERON:0001042!3.97e-10!24;UBERON:0008814!3.97e-10!24;UBERON:0009145!3.97e-10!24;UBERON:0003081!9.14e-09!88;UBERON:0000072!2.46e-08!27;UBERON:0000065!3.07e-08!41;UBERON:0001004!7.27e-08!42|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.87e-12,48;UBERON:0002405,2.87e-12,48;UBERON:0002390,4.63e-11,45;UBERON:0003061,4.63e-11,45;UBERON:0002204,3.03e-09,32;UBERON:0002371,5.68e-09,16;UBERON:0002384,7.88e-09,46|phase1_expression=0,0,0,0,0,0,0,1.16210991097419,1.267098499365,1.40438715793196,0.171217968225505,0.0797721589953364,0.856003649656029,0.874204024189974,0,1.01237633694913,0.699561878128147,2.5236973228659,1.50825876966313,0.42438965179803,0.17008658030214,0.0992909512008853,0,0.159992422793407,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,1.25559489221072,1.5626706890476,1.57057123192139,4.1176204162171,1.36609096991689,1.45653105909346,0,0,0,0,0,0,0,0,0,1.17447824240415,0,1.00828139742739,0,0,0,0,0,0,0,0,2.6996991518442,0.988866362566974,1.4209602298922,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,3.88406825470758,0,0,0,0,0.150722640552623,0.117588707135705,0,0,0,0,0.161766849947409,0.883366073841574,0.484875253135222,0,0,0,0.510914110417183,0,0,0.254140454146129,0,0,0,0.347648640384553,0.511430914660661,0.20778804455956,0,0,0.373220911830279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.210289948564127,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0.202860121388503,0,0.25462585178142,0.575392274901621,0.324270453550071,0.549122826376163,0,0.372140947668503,0,0.505157755894224,0,0.964887042726734,0.369506380333209,0,0,0,0,0,0.238043640886014,0,0.157635144106191,0.44292937929755,0,0.327726629431476,0.172684981865896,0.144649058581512,0,2.17562273527484,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0.16488625294148,0,0,0,0,0,0.18542530201051,1.53783792718067,0.412773735926445,0.185194527369712,0.565105371014073,0.546776910884101,1.14389086603261,0.339956859987711,0.139951452323658,0,0,0,0,0,0,0,0,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26404448251271,0,0.102710957164827,0.129920822977795,0.716106782669926,0.39736270956253,0.480781798079875,0.738447635872886,0.706765149637033,0.838274873204998,0.403304740547362,0.584747284438515,0.673482891482306,1.40252282617883,0,0,0,0,0,0,0.183151624267265,0.214368379079066,0,0,0.460325236507177,0.572895513439397,0.171853182343688,0,0.755393897389701,0.675022500231806,0.45032120322422,0.453142408984205,0,0,0,0,0.243106717068294,0.209613162627982,0,0,0,0,0,0,0,0,0,0.114870937911227,0,0,0,0,0,0,0,0,0,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0.231867835620421|short_description=p6@Arhgap25}} | ||
|EntrezGene=232201 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|UniProt=Q8BYW1 | |||
|association_with_transcript=269bp_to_ENSMUST00000113637,NM_001037727,uc009ctm.1,uc009ctn.1_5end | |||
|description=CAGE_peak_6_at_Arhgap25_5end | |||
|id=chr6:87482950..87482959,- | |||
|ontology_enrichment_celltype=CL:0002031!6.58e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,1.22e-11,25;CL:0002320,7.88e-09,46;CL:0000134,7.88e-09,46;CL:0000988,8.35e-09,32;CL:0002032,8.35e-09,32;CL:0000037,8.35e-09,32;CL:0000837,8.35e-09,32;CL:0000838,6.23e-08,12;CL:0000738,6.60e-08,17;CL:0002087,6.60e-08,17;CL:0000542,2.62e-07,13;CL:0000051,2.62e-07,13;CL:0000219,2.98e-07,54;CL:0000791,4.35e-07,9;CL:0000789,4.35e-07,9;CL:0002420,4.35e-07,9;CL:0002419,4.35e-07,9;CL:0000790,4.35e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,4.66e-13,3;DOID:4045,4.66e-13,3;DOID:0050686,9.35e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002193!1.15e-18!48;UBERON:0002390!6.01e-18!45;UBERON:0003061!6.01e-18!45;UBERON:0002405!3.23e-16!70;UBERON:0004177!4.00e-15!29;UBERON:0005057!8.85e-12!51;UBERON:0002370!7.75e-11!23;UBERON:0000974!7.75e-11!23;UBERON:0004807!7.75e-11!23;UBERON:0005058!7.75e-11!23;UBERON:0003351!7.75e-11!23;UBERON:0009113!7.75e-11!23;UBERON:0003295!7.75e-11!23;UBERON:0009722!7.75e-11!23;UBERON:0005562!7.75e-11!23;UBERON:0007690!7.75e-11!23;UBERON:0006562!3.97e-10!24;UBERON:0003408!3.97e-10!24;UBERON:0001557!3.97e-10!24;UBERON:0001042!3.97e-10!24;UBERON:0008814!3.97e-10!24;UBERON:0009145!3.97e-10!24;UBERON:0003081!9.14e-09!88;UBERON:0000072!2.46e-08!27;UBERON:0000065!3.07e-08!41;UBERON:0001004!7.27e-08!42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.87e-12,48;UBERON:0002405,2.87e-12,48;UBERON:0002390,4.63e-11,45;UBERON:0003061,4.63e-11,45;UBERON:0002204,3.03e-09,32;UBERON:0002371,5.68e-09,16;UBERON:0002384,7.88e-09,46 | |||
|phase1_expression=0,0,0,0,0,0,0,1.16210991097419,1.267098499365,1.40438715793196,0.171217968225505,0.0797721589953364,0.856003649656029,0.874204024189974,0,1.01237633694913,0.699561878128147,2.5236973228659,1.50825876966313,0.42438965179803,0.17008658030214,0.0992909512008853,0,0.159992422793407,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,1.25559489221072,1.5626706890476,1.57057123192139,4.1176204162171,1.36609096991689,1.45653105909346,0,0,0,0,0,0,0,0,0,1.17447824240415,0,1.00828139742739,0,0,0,0,0,0,0,0,2.6996991518442,0.988866362566974,1.4209602298922,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,3.88406825470758,0,0,0,0,0.150722640552623,0.117588707135705,0,0,0,0,0.161766849947409,0.883366073841574,0.484875253135222,0,0,0,0.510914110417183,0,0,0.254140454146129,0,0,0,0.347648640384553,0.511430914660661,0.20778804455956,0,0,0.373220911830279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.210289948564127,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0.202860121388503,0,0.25462585178142,0.575392274901621,0.324270453550071,0.549122826376163,0,0.372140947668503,0,0.505157755894224,0,0.964887042726734,0.369506380333209,0,0,0,0,0,0.238043640886014,0,0.157635144106191,0.44292937929755,0,0.327726629431476,0.172684981865896,0.144649058581512,0,2.17562273527484,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0.16488625294148,0,0,0,0,0,0.18542530201051,1.53783792718067,0.412773735926445,0.185194527369712,0.565105371014073,0.546776910884101,1.14389086603261,0.339956859987711,0.139951452323658,0,0,0,0,0,0,0,0,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26404448251271,0,0.102710957164827,0.129920822977795,0.716106782669926,0.39736270956253,0.480781798079875,0.738447635872886,0.706765149637033,0.838274873204998,0.403304740547362,0.584747284438515,0.673482891482306,1.40252282617883,0,0,0,0,0,0,0.183151624267265,0.214368379079066,0,0,0.460325236507177,0.572895513439397,0.171853182343688,0,0.755393897389701,0.675022500231806,0.45032120322422,0.453142408984205,0,0,0,0,0.243106717068294,0.209613162627982,0,0,0,0,0,0,0,0,0,0.114870937911227,0,0,0,0,0,0,0,0,0,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0.231867835620421 | |||
|short_description=p6@Arhgap25 | |||
}} |
Revision as of 10:52, 14 September 2013
Short description: | p6@Arhgap25 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Arhgap25_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 269bp_to_ENSMUST00000113637, NM_001037727, uc009ctm.1, uc009ctn.1_5end |
EntrezGene: | Arhgap25 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 1.22e-11 | 25 |
connective tissue cell | 7.88e-09 | 46 |
mesenchymal cell | 7.88e-09 | 46 |
hematopoietic cell | 8.35e-09 | 32 |
hematopoietic oligopotent progenitor cell | 8.35e-09 | 32 |
hematopoietic stem cell | 8.35e-09 | 32 |
hematopoietic multipotent progenitor cell | 8.35e-09 | 32 |
lymphoid lineage restricted progenitor cell | 6.23e-08 | 12 |
leukocyte | 6.60e-08 | 17 |
nongranular leukocyte | 6.60e-08 | 17 |
lymphocyte | 2.62e-07 | 13 |
common lymphoid progenitor | 2.62e-07 | 13 |
motile cell | 2.98e-07 | 54 |
mature alpha-beta T cell | 4.35e-07 | 9 |
alpha-beta T cell | 4.35e-07 | 9 |
immature T cell | 4.35e-07 | 9 |
mature T cell | 4.35e-07 | 9 |
immature alpha-beta T cell | 4.35e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.87e-12 | 48 |
immune system | 2.87e-12 | 48 |
hematopoietic system | 4.63e-11 | 45 |
blood island | 4.63e-11 | 45 |
musculoskeletal system | 3.03e-09 | 32 |
bone marrow | 5.68e-09 | 16 |
connective tissue | 7.88e-09 | 46 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 4.66e-13 | 3 |
muscle cancer | 4.66e-13 | 3 |
organ system cancer | 9.35e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.