FFCP PHASE1:Mm9::chr1:108608936..108608961,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=974|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:108608936..108608961,-|id=chr1:108608936..108608961,-|ontology_enrichment_celltype=CL:0000838!1.75e-13!12;CL:0000084!7.96e-13!11;CL:0000827!7.96e-13!11;CL:0000542!4.44e-12!13;CL:0000051!4.44e-12!13;CL:0000791!1.19e-10!9;CL:0000789!1.19e-10!9;CL:0002420!1.19e-10!9;CL:0002419!1.19e-10!9;CL:0000790!1.19e-10!9;CL:0000738!8.08e-10!17;CL:0002087!8.08e-10!17;CL:0002031!1.08e-09!25;CL:0000624!1.31e-09!8;CL:0000988!7.84e-08!32;CL:0002032!7.84e-08!32;CL:0000037!7.84e-08!32;CL:0000566!7.84e-08!32;CL:0000837!7.84e-08!32;CL:0000893!1.35e-07!6;CL:0002489!1.35e-07!6;CL:0000898!1.35e-07!6;CL:0000809!1.35e-07!6;CL:0000810!1.35e-07!6;CL:0000895!1.35e-07!6;CL:0000808!1.35e-07!6;CL:0000894!1.35e-07!6;CL:0000806!1.35e-07!6;CL:0000807!1.35e-07!6;CL:0000805!1.35e-07!6;CL:0002425!1.35e-07!6;CL:0002436!1.35e-07!6;CL:0002427!1.35e-07!6;CL:0002428!1.35e-07!6;CL:0002429!1.35e-07!6;CL:0002433!1.35e-07!6;CL:0002431!1.35e-07!6;CL:0002432!1.35e-07!6|ontology_enrichment_celltype_v019_2=CL:0000084,7.69e-64,11;CL:0000827,7.69e-64,11;CL:0000838,1.95e-58,12;CL:0000542,7.32e-54,13;CL:0000051,7.32e-54,13;CL:0000791,1.04e-51,9;CL:0000789,1.04e-51,9;CL:0002420,1.04e-51,9;CL:0002419,1.04e-51,9;CL:0000790,1.04e-51,9;CL:0000624,6.33e-46,8;CL:0000738,6.16e-41,17;CL:0002087,6.16e-41,17;CL:0000893,8.70e-35,6;CL:0002489,8.70e-35,6;CL:0000898,8.70e-35,6;CL:0000809,8.70e-35,6;CL:0000810,8.70e-35,6;CL:0000895,8.70e-35,6;CL:0000808,8.70e-35,6;CL:0000894,8.70e-35,6;CL:0000806,8.70e-35,6;CL:0000807,8.70e-35,6;CL:0000805,8.70e-35,6;CL:0002425,8.70e-35,6;CL:0002436,8.70e-35,6;CL:0002427,8.70e-35,6;CL:0002428,8.70e-35,6;CL:0002429,8.70e-35,6;CL:0002433,8.70e-35,6;CL:0002431,8.70e-35,6;CL:0002432,8.70e-35,6;CL:0002031,1.13e-32,25;CL:0000988,3.04e-25,32;CL:0002032,3.04e-25,32;CL:0000037,3.04e-25,32;CL:0000837,3.04e-25,32;CL:0002320,3.81e-17,46;CL:0000134,3.81e-17,46;CL:0000219,2.15e-14,54;CL:0000723,6.41e-08,91;CL:0000048,6.41e-08,91;CL:0000625,2.43e-07,1;CL:0000034,2.49e-07,97;CL:0000815,4.21e-07,1;CL:0000792,4.21e-07,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!1.06e-07!29;UBERON:0002370!1.51e-07!23;UBERON:0000974!1.51e-07!23;UBERON:0004807!1.51e-07!23;UBERON:0005058!1.51e-07!23;UBERON:0003351!1.51e-07!23;UBERON:0009113!1.51e-07!23;UBERON:0003295!1.51e-07!23;UBERON:0009722!1.51e-07!23;UBERON:0005562!1.51e-07!23;UBERON:0007690!1.51e-07!23;UBERON:0002193!3.63e-07!48;UBERON:0006562!4.99e-07!24;UBERON:0003408!4.99e-07!24;UBERON:0001557!4.99e-07!24;UBERON:0001042!4.99e-07!24;UBERON:0008814!4.99e-07!24;UBERON:0009145!4.99e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.81e-17,46;UBERON:0002370,7.22e-09,23;UBERON:0000974,7.22e-09,23;UBERON:0004807,7.22e-09,23;UBERON:0005058,7.22e-09,23;UBERON:0003351,7.22e-09,23;UBERON:0009113,7.22e-09,23;UBERON:0003295,7.22e-09,23;UBERON:0009722,7.22e-09,23;UBERON:0005562,7.22e-09,23;UBERON:0007690,7.22e-09,23;UBERON:0006562,1.75e-08,24;UBERON:0003408,1.75e-08,24;UBERON:0001557,1.75e-08,24;UBERON:0001042,1.75e-08,24;UBERON:0008814,1.75e-08,24;UBERON:0009145,1.75e-08,24;UBERON:0000072,1.69e-07,27;UBERON:0000029,1.83e-07,1;UBERON:0001097,1.83e-07,1;UBERON:0003968,1.83e-07,1;UBERON:0001467,1.83e-07,1;UBERON:0002193,4.96e-07,48;UBERON:0002405,4.96e-07,48;UBERON:0004177,5.92e-07,29;UBERON:0005057,5.92e-07,29|phase1_expression=0.160148847104794,0,0,0,0,0,0,2.58246646883153,4.08287294239834,7.72412936862578,1.36974374580404,1.11681022593471,2.9104124088305,1.92324885321794,0.333109761815663,0.202475267389826,0,0.788655413395594,1.50825876966313,0,0.0850432901510698,14.3971879241284,7.31359409589019,0,0.22940928106717,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0.335565212115473,2.90144856804538,3.02484419228218,0,0,0,0,0,0,0,0,0,0,0,0,0.768436610643109,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,0,0.255374676170375,0.307213066512487,0.131886287730194,0.182975287204819,0,0.279182999001381,0.56276261003168,0.45839474333043,0.589257170947335,0,0.186399445825301,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0,5.17875767294343,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0.484875253135222,0,0.292780797011547,0,0,0.11981512450592,0,0.254140454146129,0.299581278809645,0,0.125654352112864,0,0.255715457330331,0.41557608911912,0,0,0.124406970610093,0,0,0,0,0,0.150704817835715,0,0,0,0,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,2.64335026387038,0,0,0,0.128867461322093,0.201683524623343,0.22237804384487,0.380451252225118,0,0,0.502670417600539,0,0,0,0,0,0,0,0,0,0.193952487167626,0.280543279561274,0,0.295220295959204,0,0,0.296452627087149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0.234690248288502,0.167506257441816,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0.321321316421807,0.283880170416537,0,0,0.659880491890142,1.32745138339963,0.242780636154981,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0.23467170806371,0,0,0.65954501176592,0,0.180938774784468,0,0,0,0.370850604021019,0.854354403989263,0,0,0.376736914009382,0.136694227721025,0,0,0,0.138199973804424,0,0,0,0,0.209088296014469,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0,0.308132871494482,0.129920822977795,0,0.198681354781265,0.240390899039938,0.443068581523732,0.302899349844443,0.15241361331,0.302478555410522,0,0.384847366561318,0.701261413089414,0,0,0,0,0,0,0.73260649706906,0.214368379079066,0.501572104035363,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0.154936841185966,0,0,0,0,0.382576664137687,0.220591419119515,0|short_description=p@chr1:108608936..108608961,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=974 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:108608936..108608961,- | |||
|id=chr1:108608936..108608961,- | |||
|ontology_enrichment_celltype=CL:0000838!1.75e-13!12;CL:0000084!7.96e-13!11;CL:0000827!7.96e-13!11;CL:0000542!4.44e-12!13;CL:0000051!4.44e-12!13;CL:0000791!1.19e-10!9;CL:0000789!1.19e-10!9;CL:0002420!1.19e-10!9;CL:0002419!1.19e-10!9;CL:0000790!1.19e-10!9;CL:0000738!8.08e-10!17;CL:0002087!8.08e-10!17;CL:0002031!1.08e-09!25;CL:0000624!1.31e-09!8;CL:0000988!7.84e-08!32;CL:0002032!7.84e-08!32;CL:0000037!7.84e-08!32;CL:0000566!7.84e-08!32;CL:0000837!7.84e-08!32;CL:0000893!1.35e-07!6;CL:0002489!1.35e-07!6;CL:0000898!1.35e-07!6;CL:0000809!1.35e-07!6;CL:0000810!1.35e-07!6;CL:0000895!1.35e-07!6;CL:0000808!1.35e-07!6;CL:0000894!1.35e-07!6;CL:0000806!1.35e-07!6;CL:0000807!1.35e-07!6;CL:0000805!1.35e-07!6;CL:0002425!1.35e-07!6;CL:0002436!1.35e-07!6;CL:0002427!1.35e-07!6;CL:0002428!1.35e-07!6;CL:0002429!1.35e-07!6;CL:0002433!1.35e-07!6;CL:0002431!1.35e-07!6;CL:0002432!1.35e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,7.69e-64,11;CL:0000827,7.69e-64,11;CL:0000838,1.95e-58,12;CL:0000542,7.32e-54,13;CL:0000051,7.32e-54,13;CL:0000791,1.04e-51,9;CL:0000789,1.04e-51,9;CL:0002420,1.04e-51,9;CL:0002419,1.04e-51,9;CL:0000790,1.04e-51,9;CL:0000624,6.33e-46,8;CL:0000738,6.16e-41,17;CL:0002087,6.16e-41,17;CL:0000893,8.70e-35,6;CL:0002489,8.70e-35,6;CL:0000898,8.70e-35,6;CL:0000809,8.70e-35,6;CL:0000810,8.70e-35,6;CL:0000895,8.70e-35,6;CL:0000808,8.70e-35,6;CL:0000894,8.70e-35,6;CL:0000806,8.70e-35,6;CL:0000807,8.70e-35,6;CL:0000805,8.70e-35,6;CL:0002425,8.70e-35,6;CL:0002436,8.70e-35,6;CL:0002427,8.70e-35,6;CL:0002428,8.70e-35,6;CL:0002429,8.70e-35,6;CL:0002433,8.70e-35,6;CL:0002431,8.70e-35,6;CL:0002432,8.70e-35,6;CL:0002031,1.13e-32,25;CL:0000988,3.04e-25,32;CL:0002032,3.04e-25,32;CL:0000037,3.04e-25,32;CL:0000837,3.04e-25,32;CL:0002320,3.81e-17,46;CL:0000134,3.81e-17,46;CL:0000219,2.15e-14,54;CL:0000723,6.41e-08,91;CL:0000048,6.41e-08,91;CL:0000625,2.43e-07,1;CL:0000034,2.49e-07,97;CL:0000815,4.21e-07,1;CL:0000792,4.21e-07,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.06e-07!29;UBERON:0002370!1.51e-07!23;UBERON:0000974!1.51e-07!23;UBERON:0004807!1.51e-07!23;UBERON:0005058!1.51e-07!23;UBERON:0003351!1.51e-07!23;UBERON:0009113!1.51e-07!23;UBERON:0003295!1.51e-07!23;UBERON:0009722!1.51e-07!23;UBERON:0005562!1.51e-07!23;UBERON:0007690!1.51e-07!23;UBERON:0002193!3.63e-07!48;UBERON:0006562!4.99e-07!24;UBERON:0003408!4.99e-07!24;UBERON:0001557!4.99e-07!24;UBERON:0001042!4.99e-07!24;UBERON:0008814!4.99e-07!24;UBERON:0009145!4.99e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.81e-17,46;UBERON:0002370,7.22e-09,23;UBERON:0000974,7.22e-09,23;UBERON:0004807,7.22e-09,23;UBERON:0005058,7.22e-09,23;UBERON:0003351,7.22e-09,23;UBERON:0009113,7.22e-09,23;UBERON:0003295,7.22e-09,23;UBERON:0009722,7.22e-09,23;UBERON:0005562,7.22e-09,23;UBERON:0007690,7.22e-09,23;UBERON:0006562,1.75e-08,24;UBERON:0003408,1.75e-08,24;UBERON:0001557,1.75e-08,24;UBERON:0001042,1.75e-08,24;UBERON:0008814,1.75e-08,24;UBERON:0009145,1.75e-08,24;UBERON:0000072,1.69e-07,27;UBERON:0000029,1.83e-07,1;UBERON:0001097,1.83e-07,1;UBERON:0003968,1.83e-07,1;UBERON:0001467,1.83e-07,1;UBERON:0002193,4.96e-07,48;UBERON:0002405,4.96e-07,48;UBERON:0004177,5.92e-07,29;UBERON:0005057,5.92e-07,29 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,2.58246646883153,4.08287294239834,7.72412936862578,1.36974374580404,1.11681022593471,2.9104124088305,1.92324885321794,0.333109761815663,0.202475267389826,0,0.788655413395594,1.50825876966313,0,0.0850432901510698,14.3971879241284,7.31359409589019,0,0.22940928106717,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0.335565212115473,2.90144856804538,3.02484419228218,0,0,0,0,0,0,0,0,0,0,0,0,0.768436610643109,0,0,0,0.285650984403804,0,0,0.0958454710182364,0,0,0.255374676170375,0.307213066512487,0.131886287730194,0.182975287204819,0,0.279182999001381,0.56276261003168,0.45839474333043,0.589257170947335,0,0.186399445825301,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0,5.17875767294343,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0.484875253135222,0,0.292780797011547,0,0,0.11981512450592,0,0.254140454146129,0.299581278809645,0,0.125654352112864,0,0.255715457330331,0.41557608911912,0,0,0.124406970610093,0,0,0,0,0,0.150704817835715,0,0,0,0,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,2.64335026387038,0,0,0,0.128867461322093,0.201683524623343,0.22237804384487,0.380451252225118,0,0,0.502670417600539,0,0,0,0,0,0,0,0,0,0.193952487167626,0.280543279561274,0,0.295220295959204,0,0,0.296452627087149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0.234690248288502,0.167506257441816,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0.321321316421807,0.283880170416537,0,0,0.659880491890142,1.32745138339963,0.242780636154981,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0.23467170806371,0,0,0.65954501176592,0,0.180938774784468,0,0,0,0.370850604021019,0.854354403989263,0,0,0.376736914009382,0.136694227721025,0,0,0,0.138199973804424,0,0,0,0,0.209088296014469,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0,0.308132871494482,0.129920822977795,0,0.198681354781265,0.240390899039938,0.443068581523732,0.302899349844443,0.15241361331,0.302478555410522,0,0.384847366561318,0.701261413089414,0,0,0,0,0,0,0.73260649706906,0.214368379079066,0.501572104035363,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0.154936841185966,0,0,0,0,0.382576664137687,0.220591419119515,0 | |||
|short_description=p@chr1:108608936..108608961,- | |||
}} |
Revision as of 18:32, 13 September 2013
Short description: | p@chr1:108608936..108608961, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:108608936..108608961, - |
Coexpression cluster: | MCL_coexpression_mm9:974 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.81e-17 | 46 |
thymus | 7.22e-09 | 23 |
neck | 7.22e-09 | 23 |
respiratory system epithelium | 7.22e-09 | 23 |
hemolymphoid system gland | 7.22e-09 | 23 |
pharyngeal epithelium | 7.22e-09 | 23 |
thymic region | 7.22e-09 | 23 |
pharyngeal gland | 7.22e-09 | 23 |
entire pharyngeal arch endoderm | 7.22e-09 | 23 |
thymus primordium | 7.22e-09 | 23 |
early pharyngeal endoderm | 7.22e-09 | 23 |
pharynx | 1.75e-08 | 24 |
gland of gut | 1.75e-08 | 24 |
upper respiratory tract | 1.75e-08 | 24 |
chordate pharynx | 1.75e-08 | 24 |
pharyngeal arch system | 1.75e-08 | 24 |
pharyngeal region of foregut | 1.75e-08 | 24 |
segment of respiratory tract | 1.69e-07 | 27 |
lymph node | 1.83e-07 | 1 |
axillary lymph node | 1.83e-07 | 1 |
peripheral lymph node | 1.83e-07 | 1 |
shoulder | 1.83e-07 | 1 |
hemolymphoid system | 4.96e-07 | 48 |
immune system | 4.96e-07 | 48 |
hemopoietic organ | 5.92e-07 | 29 |
immune organ | 5.92e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.