FFCP PHASE1:Mm9::chr5:74489100..74489125,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=70036|HGNC=|UniProt=|association_with_transcript=0bp_to_ENSMUST00000117249,ENSMUST00000120364,NR_015531,uc008xth.1,uc008xti.1_5end|description=CAGE_peak_2_at_2700023E23Rik_5end|id=chr5:74489100..74489125,+|ontology_enrichment_celltype=CL:0000117!1.26e-11!23;CL:0000337!1.26e-11!23;CL:0000540!8.48e-10!33;CL:0000047!8.48e-10!33;CL:0000031!8.48e-10!33;CL:0000404!8.48e-10!33;CL:0000393!1.49e-08!39;CL:0000211!1.49e-08!39;CL:0002319!3.61e-07!43;CL:0000221!5.23e-07!44;CL:0000133!5.23e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,1.08e-11,23;CL:0000337,1.08e-11,23;CL:0000540,7.42e-10,33;CL:0000047,7.42e-10,33;CL:0000031,7.42e-10,33;CL:0000404,7.42e-10,33;CL:0000393,1.29e-08,39;CL:0000211,1.29e-08,39;CL:0002319,3.94e-07,43;CL:0000221,5.70e-07,44;CL:0000133,5.70e-07,44;CL:0000723,8.99e-07,91;CL:0000048,8.99e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.15e-12!34;UBERON:0001017!2.06e-12!73;UBERON:0005743!2.06e-12!73;UBERON:0000073!3.58e-11!75;UBERON:0001016!3.58e-11!75;UBERON:0001049!1.34e-10!52;UBERON:0005068!1.34e-10!52;UBERON:0006241!1.34e-10!52;UBERON:0007135!1.34e-10!52;UBERON:0002791!1.65e-10!29;UBERON:0003528!1.65e-10!29;UBERON:0001893!1.65e-10!29;UBERON:0000955!6.43e-10!50;UBERON:0006238!6.43e-10!50;UBERON:0002616!1.44e-09!49;UBERON:0002780!3.36e-09!39;UBERON:0001890!3.36e-09!39;UBERON:0006240!3.36e-09!39;UBERON:0003080!5.98e-09!40;UBERON:0000153!1.02e-08!94;UBERON:0000033!4.45e-08!63;UBERON:0003056!7.12e-08!49;UBERON:0007811!9.06e-08!86;UBERON:0000956!1.07e-07!21;UBERON:0001869!1.07e-07!21;UBERON:0000203!1.07e-07!21;UBERON:0002346!2.42e-07!71;UBERON:0003075!2.42e-07!71;UBERON:0007284!2.42e-07!71|ontology_enrichment_uberon_v019_2=UBERON:0002020,9.61e-13,34;UBERON:0001017,2.27e-12,73;UBERON:0000073,1.47e-11,54;UBERON:0001016,4.36e-11,75;UBERON:0001049,1.40e-10,52;UBERON:0005068,1.40e-10,52;UBERON:0006241,1.40e-10,52;UBERON:0007135,1.40e-10,52;UBERON:0003528,1.42e-10,29;UBERON:0002791,1.42e-10,29;UBERON:0001893,1.42e-10,29;UBERON:0002346,4.80e-10,64;UBERON:0003075,4.80e-10,64;UBERON:0007284,4.80e-10,64;UBERON:0000955,3.20e-09,47;UBERON:0006238,3.20e-09,47;UBERON:0002780,3.62e-09,39;UBERON:0001890,3.62e-09,39;UBERON:0006240,3.62e-09,39;UBERON:0003080,6.43e-09,40;UBERON:0002616,7.09e-09,46;UBERON:0004121,2.41e-08,95;UBERON:0000924,2.41e-08,95;UBERON:0006601,2.41e-08,95;UBERON:0010371,2.49e-08,73;UBERON:0003056,6.07e-08,49;UBERON:0000956,9.67e-08,21;UBERON:0001869,9.67e-08,21;UBERON:0000203,9.67e-08,21|phase1_expression=1.60148847104794,0,0,1.20985684522732,0,0.839396359559449,0.467225281191051,2.7115897922731,7.60259099619,9.59664557920173,9.93064215707929,12.7635454392538,2.56801094896809,5.68232615723483,1.33243904726265,2.63217847606774,2.79824751251259,2.20823515750766,1.50825876966313,2.97072756258621,1.27564935226605,3.3758923408301,4.17919662622297,0.95995453676044,2.2940928106717,0,0.430761996159075,1.07735616342945,0.950117097281869,0.252030129759931,1.99557459589774,5.08024538767705,4.92051830067656,0,3.17736781726402,2.65975432573588,1.83752420636132,0.418531630736908,0,0,0,0.683045484958446,1.45653105909346,1.76255545165808,3.64956952390252,2.20256102594018,3.12956537739216,2.18025156380447,1.09843091367236,1.55543919259427,1.1198913730029,2.87505128729943,5.70460860596304,2.17608642603403,3.02484419228218,0.514518872071894,2.0057340795713,1.54701627683233,5.26022798234954,11.6378015439847,9.50747105259269,0.677689064138264,3.55717918444456,2.2497492932035,2.96659908770092,1.4209602298922,3.59520132622086,0.768436610643109,4.56234294157302,6.07526722492608,5.67877395648731,4.57041575046086,3.3130281142742,3.91970557487853,6.13411014516713,6.43453150627015,3.30347642998166,2.17068474744819,3.07213066512487,7.25374582516066,4.94033275453012,4.68822033501084,3.07101298901519,2.25105044012672,3.66715794664344,4.71405736757868,2.70506193518296,4.84638559145781,0.908714319998209,0.377857800533928,0.869593466105033,1.72084775396277,0,1.07940638327563,0.649776417447669,0.896053774194671,0.280888840263504,0.852151612890289,1.03914401841148,0.70667914902068,1.83096445709685,0,0,0,2.81438353314578,3.29367825117628,2.02209778005913,1.25602267690966,2.07150306917737,1.92974780784272,1.04091196059682,1.52232739156071,0.691846491768175,0.753613202763113,1.41106448562846,0.628332956648377,0.988779870937496,1.15679485535929,0.884610551949874,0.323533699894818,1.10420759230197,0.969750506270444,1.86391761218122,1.75668478206928,1.67557365450764,0.255457055208591,2.75574786363617,1.79970819298022,1.65191295194984,1.79748767285787,2.74500361691176,2.89005009859588,2.08589184230732,2.55715457330331,1.87009240103604,2.92034273521964,2.64782346010822,1.61729061793121,5.05445516867349,0,2.21204753036596,4.36813998423599,1.0803727788321,2.71268672104287,2.9255694635071,2.17793324484245,1.59292931751539,1.29351685369508,0.646703978798527,2.83659120251729,5.63043597324636,4.82230611340665,2.22437799380478,2.089512999133,3.2925141825271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| ||
|EntrezGene=70036 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000117249,ENSMUST00000120364,NR_015531,uc008xth.1,uc008xti.1_5end | |||
|description=CAGE_peak_2_at_2700023E23Rik_5end | |||
|id=chr5:74489100..74489125,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.26e-11!23;CL:0000337!1.26e-11!23;CL:0000540!8.48e-10!33;CL:0000047!8.48e-10!33;CL:0000031!8.48e-10!33;CL:0000404!8.48e-10!33;CL:0000393!1.49e-08!39;CL:0000211!1.49e-08!39;CL:0002319!3.61e-07!43;CL:0000221!5.23e-07!44;CL:0000133!5.23e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.08e-11,23;CL:0000337,1.08e-11,23;CL:0000540,7.42e-10,33;CL:0000047,7.42e-10,33;CL:0000031,7.42e-10,33;CL:0000404,7.42e-10,33;CL:0000393,1.29e-08,39;CL:0000211,1.29e-08,39;CL:0002319,3.94e-07,43;CL:0000221,5.70e-07,44;CL:0000133,5.70e-07,44;CL:0000723,8.99e-07,91;CL:0000048,8.99e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.15e-12!34;UBERON:0001017!2.06e-12!73;UBERON:0005743!2.06e-12!73;UBERON:0000073!3.58e-11!75;UBERON:0001016!3.58e-11!75;UBERON:0001049!1.34e-10!52;UBERON:0005068!1.34e-10!52;UBERON:0006241!1.34e-10!52;UBERON:0007135!1.34e-10!52;UBERON:0002791!1.65e-10!29;UBERON:0003528!1.65e-10!29;UBERON:0001893!1.65e-10!29;UBERON:0000955!6.43e-10!50;UBERON:0006238!6.43e-10!50;UBERON:0002616!1.44e-09!49;UBERON:0002780!3.36e-09!39;UBERON:0001890!3.36e-09!39;UBERON:0006240!3.36e-09!39;UBERON:0003080!5.98e-09!40;UBERON:0000153!1.02e-08!94;UBERON:0000033!4.45e-08!63;UBERON:0003056!7.12e-08!49;UBERON:0007811!9.06e-08!86;UBERON:0000956!1.07e-07!21;UBERON:0001869!1.07e-07!21;UBERON:0000203!1.07e-07!21;UBERON:0002346!2.42e-07!71;UBERON:0003075!2.42e-07!71;UBERON:0007284!2.42e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,9.61e-13,34;UBERON:0001017,2.27e-12,73;UBERON:0000073,1.47e-11,54;UBERON:0001016,4.36e-11,75;UBERON:0001049,1.40e-10,52;UBERON:0005068,1.40e-10,52;UBERON:0006241,1.40e-10,52;UBERON:0007135,1.40e-10,52;UBERON:0003528,1.42e-10,29;UBERON:0002791,1.42e-10,29;UBERON:0001893,1.42e-10,29;UBERON:0002346,4.80e-10,64;UBERON:0003075,4.80e-10,64;UBERON:0007284,4.80e-10,64;UBERON:0000955,3.20e-09,47;UBERON:0006238,3.20e-09,47;UBERON:0002780,3.62e-09,39;UBERON:0001890,3.62e-09,39;UBERON:0006240,3.62e-09,39;UBERON:0003080,6.43e-09,40;UBERON:0002616,7.09e-09,46;UBERON:0004121,2.41e-08,95;UBERON:0000924,2.41e-08,95;UBERON:0006601,2.41e-08,95;UBERON:0010371,2.49e-08,73;UBERON:0003056,6.07e-08,49;UBERON:0000956,9.67e-08,21;UBERON:0001869,9.67e-08,21;UBERON:0000203,9.67e-08,21 | |||
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| |||
|short_description=p2@2700023E23Rik | |||
}} |
Revision as of 08:00, 14 September 2013
Short description: | p2@2700023E23Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_2700023E23Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000117249, ENSMUST00000120364, NR_015531, uc008xth.1, uc008xti.1_5end |
EntrezGene: | 2700023E23Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.08e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.08e-11 | 23 |
neuron | 7.42e-10 | 33 |
neuronal stem cell | 7.42e-10 | 33 |
neuroblast | 7.42e-10 | 33 |
electrically signaling cell | 7.42e-10 | 33 |
electrically responsive cell | 1.29e-08 | 39 |
electrically active cell | 1.29e-08 | 39 |
neural cell | 3.94e-07 | 43 |
ectodermal cell | 5.70e-07 | 44 |
neurectodermal cell | 5.70e-07 | 44 |
somatic stem cell | 8.99e-07 | 91 |
multi fate stem cell | 8.99e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
gray matter | 9.61e-13 | 34 |
central nervous system | 2.27e-12 | 73 |
regional part of nervous system | 1.47e-11 | 54 |
nervous system | 4.36e-11 | 75 |
neural tube | 1.40e-10 | 52 |
neural rod | 1.40e-10 | 52 |
future spinal cord | 1.40e-10 | 52 |
neural keel | 1.40e-10 | 52 |
brain grey matter | 1.42e-10 | 29 |
regional part of telencephalon | 1.42e-10 | 29 |
telencephalon | 1.42e-10 | 29 |
neurectoderm | 4.80e-10 | 64 |
neural plate | 4.80e-10 | 64 |
presumptive neural plate | 4.80e-10 | 64 |
brain | 3.20e-09 | 47 |
future brain | 3.20e-09 | 47 |
regional part of forebrain | 3.62e-09 | 39 |
forebrain | 3.62e-09 | 39 |
future forebrain | 3.62e-09 | 39 |
anterior neural tube | 6.43e-09 | 40 |
regional part of brain | 7.09e-09 | 46 |
ectoderm-derived structure | 2.41e-08 | 95 |
ectoderm | 2.41e-08 | 95 |
presumptive ectoderm | 2.41e-08 | 95 |
ecto-epithelium | 2.49e-08 | 73 |
pre-chordal neural plate | 6.07e-08 | 49 |
cerebral cortex | 9.67e-08 | 21 |
cerebral hemisphere | 9.67e-08 | 21 |
pallium | 9.67e-08 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.