FFCP PHASE1:Mm9::chr8:26127724..26127777,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=69742|HGNC=|MCL_coexpression_id=641|UniProt=Q8R0I4|association_with_transcript=41bp_to_ENSMUST00000033961,NM_027194,uc009lfm.2,uc009lfn.2_5end|description=CAGE_peak_1_at_Tm2d2_5end|id=chr8:26127724..26127777,+|ontology_enrichment_celltype=CL:0000055!1.95e-13!50;CL:0002321!1.06e-12!70;CL:0000220!1.06e-12!70;CL:0000221!3.95e-10!44;CL:0000133!3.95e-10!44;CL:0002319!7.02e-10!43;CL:0000393!4.43e-08!39;CL:0000211!4.43e-08!39;CL:0000117!8.25e-07!23;CL:0000337!8.25e-07!23|ontology_enrichment_celltype_v019_2=CL:0002321,1.06e-12,70;CL:0000221,3.95e-10,44;CL:0000133,3.95e-10,44;CL:0002319,7.02e-10,43;CL:0000393,4.43e-08,39;CL:0000211,4.43e-08,39;CL:0000117,8.25e-07,23;CL:0000337,8.25e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.13e-15!75;UBERON:0001016!1.13e-15!75;UBERON:0001017!2.88e-15!73;UBERON:0005743!2.88e-15!73;UBERON:0004121!4.59e-13!102;UBERON:0000924!4.59e-13!102;UBERON:0006601!4.59e-13!102;UBERON:0001049!1.27e-12!52;UBERON:0005068!1.27e-12!52;UBERON:0006241!1.27e-12!52;UBERON:0007135!1.27e-12!52;UBERON:0002346!1.95e-11!71;UBERON:0003075!1.95e-11!71;UBERON:0007284!1.95e-11!71;UBERON:0002616!3.33e-11!49;UBERON:0000955!3.73e-11!50;UBERON:0006238!3.73e-11!50;UBERON:0004111!2.65e-10!122;UBERON:0002020!2.93e-10!34;UBERON:0000033!1.13e-09!63;UBERON:0000025!1.82e-09!114;UBERON:0003080!1.86e-09!40;UBERON:0002780!1.87e-09!39;UBERON:0001890!1.87e-09!39;UBERON:0006240!1.87e-09!39;UBERON:0002791!1.42e-08!29;UBERON:0003528!1.42e-08!29;UBERON:0001893!1.42e-08!29;UBERON:0003056!2.47e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.13e-15,75;UBERON:0001017,2.88e-15,73;UBERON:0000073,5.92e-13,54;UBERON:0001049,1.27e-12,52;UBERON:0005068,1.27e-12,52;UBERON:0006241,1.27e-12,52;UBERON:0007135,1.27e-12,52;UBERON:0004121,6.19e-12,95;UBERON:0000924,6.19e-12,95;UBERON:0006601,6.19e-12,95;UBERON:0010314,6.93e-11,92;UBERON:0002616,8.32e-11,46;UBERON:0000955,9.42e-11,47;UBERON:0006238,9.42e-11,47;UBERON:0002346,1.89e-10,64;UBERON:0003075,1.89e-10,64;UBERON:0007284,1.89e-10,64;UBERON:0004111,2.65e-10,122;UBERON:0002020,2.93e-10,34;UBERON:0000025,1.82e-09,114;UBERON:0003080,1.86e-09,40;UBERON:0002780,1.87e-09,39;UBERON:0001890,1.87e-09,39;UBERON:0006240,1.87e-09,39;UBERON:0010371,6.63e-09,73;UBERON:0003528,1.42e-08,29;UBERON:0002791,1.42e-08,29;UBERON:0001893,1.42e-08,29;UBERON:0003056,2.47e-07,49|phase1_expression=69.3444507963758,53.7422127764616,52.7799117691862,46.277024329945,47.0841986149566,43.3128521532676,45.320852275532,22.9839515726006,12.67098499365,11.9372908424217,15.923271044972,18.9060016818947,25.3377080298184,23.6909290555483,21.9852442798337,21.0574278085419,13.2916756844348,27.918401634204,21.526966076101,27.1609377150739,69.6504546337261,43.3901456747869,60.598351080233,74.7164614445209,79.8344298113752,63.1655160526522,65.0450614200203,63.3485424096514,110.403606704153,89.9747563242953,86.9183601768794,20.3209815507082,12.3012957516914,15.8481681015439,53.1486980342345,60.0107069744157,51.6548471343794,60.2685548261147,67.9761749735706,57.064088093144,64.7054636834116,69.6706394657615,65.0583873061746,92.030573940147,102.796208256588,95.8114046283978,273.836970521814,144.114628367475,155.537817376006,179.653226744638,102.470060629765,191.190910605412,23.8251300601986,22.4862264023517,29.2401605253944,127.60068027383,105.157772457524,132.012055623025,82.9497489524351,90.4574574555176,88.7363964908651,157.901551944216,134.283514212782,267.270216032575,290.72671059469,271.40340390941,164.780060785123,198.640863851244,55.1628737481101,64.8028503992115,74.6653612797406,102.834354385369,96.5195523958551,67.4924303674397,59.3283465602883,78.1335968618518,67.1706874096271,66.7804778185532,65.4363831671597,79.3955452135767,72.0922631586988,76.0533521012869,92.6887556684585,79.9122906244986,73.8015536761993,73.3625177829433,69.0502651875649,78.8469655841022,74.7417528198527,61.3641068067098,72.1762576867178,110.134256253617,73.4369040404371,122.512624501784,141.001482586144,121.415286403378,85.1093185998416,82.3178458052019,95.8610356984586,104.23517448055,73.3794217036505,52.6138557398703,7.64415719119937,35.5533351576666,80.1016851741492,79.8083576246561,97.5662178878532,74.7904412159843,30.5546702703663,76.7445858965144,49.4433181283487,67.8958016636075,64.8029547289524,74.0048165113377,55.0315149395098,80.552285042322,51.1693583210154,51.4773710634885,30.9613693182456,44.9711842853797,39.3097902859501,32.9715172131951,78.2845397116113,57.6778170112748,58.2261844941405,50.3250398760925,59.1886715059246,70.7885222572221,52.0987930999565,60.0660464013339,68.1675898199753,64.4606826338994,70.0512010374874,69.2988889365196,74.3881199523225,72.0351208020844,55.2987745707217,40.05904453645,70.0042040861279,53.4522313951644,42.8096257347295,59.0848408394025,46.2759673599748,48.2255417074288,44.5639069441197,43.1743237359944,50.9737381604925,56.1386314503664,41.6046226360385,33.8499883500397,44.5156344134791,54.141345909611,42.5412291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| ||
|EntrezGene=69742 | |||
|HGNC= | |||
|MCL_coexpression_id=641 | |||
|UniProt=Q8R0I4 | |||
|association_with_transcript=41bp_to_ENSMUST00000033961,NM_027194,uc009lfm.2,uc009lfn.2_5end | |||
|description=CAGE_peak_1_at_Tm2d2_5end | |||
|id=chr8:26127724..26127777,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.95e-13!50;CL:0002321!1.06e-12!70;CL:0000220!1.06e-12!70;CL:0000221!3.95e-10!44;CL:0000133!3.95e-10!44;CL:0002319!7.02e-10!43;CL:0000393!4.43e-08!39;CL:0000211!4.43e-08!39;CL:0000117!8.25e-07!23;CL:0000337!8.25e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.06e-12,70;CL:0000221,3.95e-10,44;CL:0000133,3.95e-10,44;CL:0002319,7.02e-10,43;CL:0000393,4.43e-08,39;CL:0000211,4.43e-08,39;CL:0000117,8.25e-07,23;CL:0000337,8.25e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.13e-15!75;UBERON:0001016!1.13e-15!75;UBERON:0001017!2.88e-15!73;UBERON:0005743!2.88e-15!73;UBERON:0004121!4.59e-13!102;UBERON:0000924!4.59e-13!102;UBERON:0006601!4.59e-13!102;UBERON:0001049!1.27e-12!52;UBERON:0005068!1.27e-12!52;UBERON:0006241!1.27e-12!52;UBERON:0007135!1.27e-12!52;UBERON:0002346!1.95e-11!71;UBERON:0003075!1.95e-11!71;UBERON:0007284!1.95e-11!71;UBERON:0002616!3.33e-11!49;UBERON:0000955!3.73e-11!50;UBERON:0006238!3.73e-11!50;UBERON:0004111!2.65e-10!122;UBERON:0002020!2.93e-10!34;UBERON:0000033!1.13e-09!63;UBERON:0000025!1.82e-09!114;UBERON:0003080!1.86e-09!40;UBERON:0002780!1.87e-09!39;UBERON:0001890!1.87e-09!39;UBERON:0006240!1.87e-09!39;UBERON:0002791!1.42e-08!29;UBERON:0003528!1.42e-08!29;UBERON:0001893!1.42e-08!29;UBERON:0003056!2.47e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.13e-15,75;UBERON:0001017,2.88e-15,73;UBERON:0000073,5.92e-13,54;UBERON:0001049,1.27e-12,52;UBERON:0005068,1.27e-12,52;UBERON:0006241,1.27e-12,52;UBERON:0007135,1.27e-12,52;UBERON:0004121,6.19e-12,95;UBERON:0000924,6.19e-12,95;UBERON:0006601,6.19e-12,95;UBERON:0010314,6.93e-11,92;UBERON:0002616,8.32e-11,46;UBERON:0000955,9.42e-11,47;UBERON:0006238,9.42e-11,47;UBERON:0002346,1.89e-10,64;UBERON:0003075,1.89e-10,64;UBERON:0007284,1.89e-10,64;UBERON:0004111,2.65e-10,122;UBERON:0002020,2.93e-10,34;UBERON:0000025,1.82e-09,114;UBERON:0003080,1.86e-09,40;UBERON:0002780,1.87e-09,39;UBERON:0001890,1.87e-09,39;UBERON:0006240,1.87e-09,39;UBERON:0010371,6.63e-09,73;UBERON:0003528,1.42e-08,29;UBERON:0002791,1.42e-08,29;UBERON:0001893,1.42e-08,29;UBERON:0003056,2.47e-07,49 | |||
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| |||
|short_description=p1@Tm2d2 | |||
}} |
Revision as of 15:24, 14 September 2013
Short description: | p1@Tm2d2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tm2d2_5end |
Coexpression cluster: | MCL_coexpression_mm9:641 |
Association with transcript: | 41bp_to_ENSMUST00000033961, NM_027194, uc009lfm.2, uc009lfn.2_5end |
EntrezGene: | Tm2d2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.06e-12 | 70 |
ectodermal cell | 3.95e-10 | 44 |
neurectodermal cell | 3.95e-10 | 44 |
neural cell | 7.02e-10 | 43 |
electrically responsive cell | 4.43e-08 | 39 |
electrically active cell | 4.43e-08 | 39 |
CNS neuron (sensu Vertebrata) | 8.25e-07 | 23 |
neuroblast (sensu Vertebrata) | 8.25e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.13e-15 | 75 |
central nervous system | 2.88e-15 | 73 |
regional part of nervous system | 5.92e-13 | 54 |
neural tube | 1.27e-12 | 52 |
neural rod | 1.27e-12 | 52 |
future spinal cord | 1.27e-12 | 52 |
neural keel | 1.27e-12 | 52 |
ectoderm-derived structure | 6.19e-12 | 95 |
ectoderm | 6.19e-12 | 95 |
presumptive ectoderm | 6.19e-12 | 95 |
structure with developmental contribution from neural crest | 6.93e-11 | 92 |
regional part of brain | 8.32e-11 | 46 |
brain | 9.42e-11 | 47 |
future brain | 9.42e-11 | 47 |
neurectoderm | 1.89e-10 | 64 |
neural plate | 1.89e-10 | 64 |
presumptive neural plate | 1.89e-10 | 64 |
anatomical conduit | 2.65e-10 | 122 |
gray matter | 2.93e-10 | 34 |
tube | 1.82e-09 | 114 |
anterior neural tube | 1.86e-09 | 40 |
regional part of forebrain | 1.87e-09 | 39 |
forebrain | 1.87e-09 | 39 |
future forebrain | 1.87e-09 | 39 |
ecto-epithelium | 6.63e-09 | 73 |
brain grey matter | 1.42e-08 | 29 |
regional part of telencephalon | 1.42e-08 | 29 |
telencephalon | 1.42e-08 | 29 |
pre-chordal neural plate | 2.47e-07 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.