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Genes, TSS regions, motifs, samples, etc profiled in FANTOM5. | |||
=== Usage === | |||
* Just click any in the left menue | |||
* Or, keyword search on top of this page. | |||
* Or, make a complex query at [[Special:Ask]], if you are familiar with [http://semantic-mediawiki.org/ Semantic MediaWIki] | |||
=== Note === | |||
* we are focusing on phase1 freeze, and we are '''still keep updating''' this. | |||
* contact: KAWAJI, Hideya <kawaji@gsc.riken.jp>, SHIMOJI, Hisashi <hisashi.shimoji@dnaform.jp>, or WP4 <fantom5-wp4@gsc.riken.jp> | |||
=== Data source === | |||
See [[Data_source]] | |||
= Other browsers/resources = | |||
* [https://fantom5-collaboration.gsc.riken.jp/wiki FANTOM5 collaboration wiki] | |||
* [https://fantom5-collaboration.gsc.riken.jp/zenbu zenbu] | |||
* [https://fantom5-collaboration.gsc.riken.jp/ucsc UCSC mirror (at RIKEN)] | |||
* [http://yuri.lbl.gov:8600/fonse/ FONSE (Fantomy ONtology Sample Explorer)] (user:terry , pass: T34s377) | |||
* [http://www.biolayout.org/fantom5/ BioLayout] | |||
* FANTOM5 [http://people.binf.ku.dk/tfb525/fantom/ promoter] / [http://people.binf.ku.dk/tfb525/enhancers/ enhancer] selector (by Kang and Albin; pass: 9EPefA4e) | |||
* [https://fantom5-collaboration.gsc.riken.jp/files/data/shared/FREEZE_PHASE1/ phase1 data freeze] | |||
* [https://fantom5-collaboration.gsc.riken.jp/files/data/shared/LATEST_UPDATE/ latest update] | |||
--- old sidebar --- | --- old sidebar --- | ||
Latest revision as of 19:16, 22 November 2012
Genes, TSS regions, motifs, samples, etc profiled in FANTOM5.
Usage
- Just click any in the left menue
- Or, keyword search on top of this page.
- Or, make a complex query at Special:Ask, if you are familiar with Semantic MediaWIki
Note
- we are focusing on phase1 freeze, and we are still keep updating this.
- contact: KAWAJI, Hideya <kawaji@gsc.riken.jp>, SHIMOJI, Hisashi <hisashi.shimoji@dnaform.jp>, or WP4 <fantom5-wp4@gsc.riken.jp>
Data source
See Data_source
Other browsers/resources
- FANTOM5 collaboration wiki
- zenbu
- UCSC mirror (at RIKEN)
- FONSE (Fantomy ONtology Sample Explorer) (user:terry , pass: T34s377)
- BioLayout
- FANTOM5 promoter / enhancer selector (by Kang and Albin; pass: 9EPefA4e)
--- old sidebar ---
- Samples by
- Browse_samples|Names
- Browse_facet|Categories
- Browse_series|Series of experiments
- Browse_datatype|Data type
- MCL coexpression
- Browse_coexpression_clusters|Human
- Browse_MCL_coexpression_mouse|Mouse
- Ontologies
- FF_Ontology_terms_list|FANTOM5 (FF)
- Cell_Ontology_terms_list|Cell Type (CL)
- Human_Disease_Ontology_terms_list|Disease (DOID)
- Uber_Anatomy_Ontology_terms_list|Anatomy (UBERON)
- Motif
- Browse_MacroAPE|MacroAPE
- Browse_swissregulon|Swissregulon
- Transcription Factors
- Browse Transcription Factors hg19|Human
- Browse Transcription Factors mm9|Mouse
- Genes, etc
- Browse_genes|Genes
- Browse_tss|TSSs
