UBERON:0000170: Difference between revisions
From FANTOM5_SSTAR
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|has_quality= | |has_quality= | ||
|id=UBERON:0000170 | |id=UBERON:0000170 | ||
|is_a=UBERON:0000477 | |is_a=UBERON:0000477 ;;UBERON:0004119 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
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|namespace= | |namespace= | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of=UBERON:0001558 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
Revision as of 10:52, 12 September 2014
| Name: | pair of lungs | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"lungs" EXACT [] "lungs pair" EXACT [] "pulmones" EXACT [FMA:68877, FMA:TA] "set of lungs" EXACT [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0004119(endoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001558(lower respiratory tract) |
Children
| part of: | FF:0000326 (lung - fetal week 6),UBERON:0002048 (lung),FF:0010019 (human lung - adult sample),FF:0010068 (human lung - fetal sample),FF:0011394 (mouse lung- neonate N00 sample),FF:0011402 (mouse lung- neonate N06 sample),FF:0011408 (mouse lung- neonate N07 sample),FF:0011415 (mouse lung- neonate N10 sample),FF:0011488 (mouse lung- neonate N25 sample),FF:0011489 (mouse lung- neonate N30 sample),FF:0011513 (mouse lung- embryo E18 sample),FF:1287-20I6 (lung, embryo E18),FF:1359-25C7 (lung, neonate N25),FF:1394-42H2 (lung, neonate N30),FF:640-42C6 (lung, neonate N00),FF:683-20E5 (lung, neonate N06),FF:715-19A3 (lung, neonate N07),FF:750-23E6 (lung, neonate N10) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10019-101D1 (lung, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
... further results Mouse (Mus musculus)
- 10019-101D1 (lung, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10446-106F5
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000170 (pair of lungs), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.5e-81 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_be7f73d6c5429ff9d6d6381e8d436aeb | p4@Tbx4 |
| 3.5e-81 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_be7f73d6c5429ff9d6d6381e8d436aeb | p4@Tbx4 |
| 1.94e-76 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_f2a0a320484506841bcde5d5ad5de386 | p1@ENSMUST00000134305 |
| 1.94e-76 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_f2a0a320484506841bcde5d5ad5de386 | p1@ENSMUST00000134305 |
| 6.06e-75 | FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_cb0b14d5b04772122f6d2cd8533508a6 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 6.06e-75 | FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_cb0b14d5b04772122f6d2cd8533508a6 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 7.98e-75 | FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_91057ed37f9de703df50562a097f8dcd | p6@Tbx4 |
| 7.98e-75 | FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_91057ed37f9de703df50562a097f8dcd | p6@Tbx4 |
| 3.64e-74 | FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr12:57598716..57598720, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr4:138812977..138812992, + |
| 3.64e-74 | FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr8:94878479..94878503, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr8:94878479..94878503, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr11:59457994..59457997, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr12:57636003..57636017, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr12:57598716..57598720, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr12:57636003..57636017, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr4:138812977..138812992, + |
| 3.64e-74 | FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_18bb570eb7dd4d2736bc4099f13f0f6b | p@chr11:59457994..59457997, - |
| 3.06e-70 | FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_bf4423f68ae685d7175e8e25f274ad1a | p8@Nkx2-1 |
| 3.06e-70 | FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_bf4423f68ae685d7175e8e25f274ad1a | p8@Nkx2-1 |
| 3.48e-70 | FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_1e07669f9d78cf8a57e07a3622838551 | p2@E030019B13Rik |
| 3.48e-70 | FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_1e07669f9d78cf8a57e07a3622838551 | p2@E030019B13Rik |
| 3.96e-70 | FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_0be009b357d91b720fd52e4359b1cc38 | p10@Nebl |
| 3.96e-70 | FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_0be009b357d91b720fd52e4359b1cc38 | p10@Nebl |
| 4.5e-70 | FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_870fa8e877ec5a15066391334e09d8c3 | p9@Nkx2-1 |
| 4.5e-70 | FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_870fa8e877ec5a15066391334e09d8c3 | p9@Nkx2-1 |
| 9.69e-69 | FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_7cf1df3b520b3386c90417e1204f54c9 | p3@E030019B13Rik |
| 9.69e-69 | FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_7cf1df3b520b3386c90417e1204f54c9 | p3@Trpm6 |
| 9.69e-69 | FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_7cf1df3b520b3386c90417e1204f54c9 | p@chr12:57598537..57598547, - |
| 9.69e-69 | FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_7cf1df3b520b3386c90417e1204f54c9 | p3@Trpm6 |
| 9.69e-69 | FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_7cf1df3b520b3386c90417e1204f54c9 | p3@E030019B13Rik |
| 9.69e-69 | FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_7cf1df3b520b3386c90417e1204f54c9 | p@chr12:57598537..57598547, - |
| 1.11e-68 | FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_9a160305848fbcd56a91a78f972d9e14 | p@chr14:115241755..115241762, - |
| 1.11e-68 | FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_9a160305848fbcd56a91a78f972d9e14 | p@chr14:115241755..115241762, - |
| 1.27e-68 | FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_4878698fea4c34fb6d00999d87fa0990 | p@chr4:138812999..138813015, + |
| 1.27e-68 | FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_4878698fea4c34fb6d00999d87fa0990 | p@chr4:138812999..138813015, + |
| 4.47e-68 | FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_bfb0c3966167fd30f083960b820bf880 | p@chr5:120282691..120282701, + |
| 4.47e-68 | FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_bfb0c3966167fd30f083960b820bf880 | p@chr5:120282691..120282701, + |
| 5.44e-68 | FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_be6c286d02bb262c758e5f8a8e01c65d | p4@Sftpb |
| 5.44e-68 | FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_be6c286d02bb262c758e5f8a8e01c65d | p@chr1:184610062..184610074, + |
| 5.44e-68 | FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_be6c286d02bb262c758e5f8a8e01c65d | p3@Sftpb |
| 5.44e-68 | FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_be6c286d02bb262c758e5f8a8e01c65d | p@chr14:70921265..70921285, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_be6c286d02bb262c758e5f8a8e01c65d | p@chr2:66524237..66524246, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_be6c286d02bb262c758e5f8a8e01c65d | p@chr1:184610062..184610074, + |
| 5.44e-68 | FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_be6c286d02bb262c758e5f8a8e01c65d | p@chr2:66524237..66524246, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_be6c286d02bb262c758e5f8a8e01c65d | p@chr14:70922576..70922589, - |
| 5.44e-68 | FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_be6c286d02bb262c758e5f8a8e01c65d | p3@Sftpb |
| 5.44e-68 | FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_be6c286d02bb262c758e5f8a8e01c65d | p4@Sftpb |
| 5.44e-68 | FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_be6c286d02bb262c758e5f8a8e01c65d | p@chr14:70922576..70922589, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_be6c286d02bb262c758e5f8a8e01c65d | p@chr14:70921265..70921285, - |
| 5.08e-66 | FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_ed6913dc1613962ae4f745fcb30abf6d | p4@E030019B13Rik |
| 5.08e-66 | FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_ed6913dc1613962ae4f745fcb30abf6d | p4@E030019B13Rik |
| 4.92e-64 | FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_839e6f00fd848495859cc30a5b163855 | p@chr12:57623172..57623185, - |
| 4.92e-64 | FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_839e6f00fd848495859cc30a5b163855 | p@chr14:70922007..70922052, + |
| 4.92e-64 | FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_839e6f00fd848495859cc30a5b163855 | p@chr12:57623172..57623185, - |
| 4.92e-64 | FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_839e6f00fd848495859cc30a5b163855 | p@chr14:70922007..70922052, + |
| 5.59e-64 | FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_fb114c929a522039e6e8290d8225828a | p@chr5:28785436..28785450, - |
| 5.59e-64 | FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_fb114c929a522039e6e8290d8225828a | p@chr5:28785436..28785450, - |
| 6.35e-64 | FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_76d45f3bdfb55d1015a2bb8a459204f6 | p@chr14:70922459..70922482, - |
| 6.35e-64 | FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_76d45f3bdfb55d1015a2bb8a459204f6 | p@chr14:70922459..70922482, - |
| 2.55e-63 | FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_7c441e12ad2341a01e3372f3fb57f2ed | p4@Etv5 |
| 2.55e-63 | FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_7c441e12ad2341a01e3372f3fb57f2ed | p4@Etv5 |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_c72420f5be9dea2072aa23e222d97ba7 | p@chr6:72263977..72263993, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_c72420f5be9dea2072aa23e222d97ba7 | p@chr12:57376690..57376716, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_c72420f5be9dea2072aa23e222d97ba7 | p@chr6:72264418..72264441, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_c72420f5be9dea2072aa23e222d97ba7 | p@chr14:70923240..70923251, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_c72420f5be9dea2072aa23e222d97ba7 | p@chr12:57376690..57376716, - |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_c72420f5be9dea2072aa23e222d97ba7 | p@chr6:72259797..72259814, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_c72420f5be9dea2072aa23e222d97ba7 | p@chr14:70922486..70922510, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_c72420f5be9dea2072aa23e222d97ba7 | p@chr14:70923240..70923251, - |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_c72420f5be9dea2072aa23e222d97ba7 | p@chr6:72264890..72264911, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_c72420f5be9dea2072aa23e222d97ba7 | p4@Lamp3 |
| 1.43e-62 | FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_c72420f5be9dea2072aa23e222d97ba7 | p@chr14:70922486..70922510, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_c72420f5be9dea2072aa23e222d97ba7 | p@chr6:72259797..72259814, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_c72420f5be9dea2072aa23e222d97ba7 | p@chr6:72264418..72264441, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_c72420f5be9dea2072aa23e222d97ba7 | p@chr6:72264890..72264911, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_c72420f5be9dea2072aa23e222d97ba7 | p4@Lamp3 |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_c72420f5be9dea2072aa23e222d97ba7 | p@chr6:72263977..72263993, + |
| 1.63e-62 | FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_d4748b83c49912f2b8ce296f9b07922a | p@chr6:72264609..72264653, - |
| 1.63e-62 | FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_d4748b83c49912f2b8ce296f9b07922a | p@chr6:72264609..72264653, - |
| 1.87e-62 | FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_094d9ab85ef8db71261878c56437658d | p@chr6:129378567..129378573, - |
| 1.87e-62 | FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_094d9ab85ef8db71261878c56437658d | p@chr6:129378567..129378573, - |
| 1.91e-62 | FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_a564f9435e04095bed4a14afc474bdb5 | p16@Pde5a |
| 1.91e-62 | FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_a564f9435e04095bed4a14afc474bdb5 | p16@Pde5a |
| 3.02e-62 | FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_0a600dc9b8884f410e29b14a58241798 | p7@Nkx2-1 |
| 3.02e-62 | FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_0a600dc9b8884f410e29b14a58241798 | p7@Nkx2-1 |
| 5.06e-62 | FFCP PHASE1:Mm9::chr12:57636936..57636953,-#_077604bb1a585e0d470af748402517e4 | p@chr12:57636936..57636953, - |
| 5.06e-62 | FFCP PHASE2:Mm9::chr12:57636936..57636953,-#_077604bb1a585e0d470af748402517e4 | p@chr12:57636936..57636953, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr16:19673341..19673350,-#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr16:19673341..19673350, - |
| 7.58e-62 | FFCP PHASE2:Mm9::chr6:72259749..72259765,+#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr6:72259749..72259765, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr14:41949922..41949935,+#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr14:41949922..41949935, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr17:67043399..67043410,-#_9a8bbe7948d4e79e8a33a4807419f767 | p9@Ptprm |
| 7.58e-62 | FFCP PHASE2:Mm9::chr2:152591095..152591110,-#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr2:152591095..152591110, - |
| 7.58e-62 | FFCP PHASE2:Mm9::chr6:72264657..72264693,-#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr6:72264657..72264693, - |
| 7.58e-62 | FFCP PHASE2:Mm9::chr16:19673260..19673277,-#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr16:19673260..19673277, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr17:67043399..67043410,-#_9a8bbe7948d4e79e8a33a4807419f767 | p9@Ptprm |
| 7.58e-62 | FFCP PHASE1:Mm9::chr5:28785382..28785394,-#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr5:28785382..28785394, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr2:126950686..126950702,-#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr2:126950686..126950702, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr14:41949922..41949935,+#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr14:41949922..41949935, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr6:72259749..72259765,+#_9a8bbe7948d4e79e8a33a4807419f767 | p@chr6:72259749..72259765, + |
