FFCP PHASE1:Hg19::chr12:56114169..56114185,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5959|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9940|TSSclassifier=S|UniProt=Q92781,F8VUB9|association_with_transcript=0bp_to_ENST00000257895,ENST00000548486,ENST00000552930,ENST00000553187_5end|coexpression_cluster_id=C29|description=CAGE_peak_1_at_RDH5_5end|id=chr12:56114169..56114185,+|ontology_enrichment_celltype=CL:0000055!1.69e-26!180;CL:0000057!2.03e-16!75;CL:0000680!4.18e-12!57;CL:0000056!4.18e-12!57;CL:0000355!4.18e-12!57;CL:0000183!1.09e-10!59;CL:0000187!1.32e-10!54;CL:0000136!1.98e-10!15;CL:0000192!7.75e-09!42;CL:0000514!7.75e-09!42;CL:0002620!1.23e-08!23;CL:0000393!2.65e-08!60;CL:0000211!2.65e-08!60;CL:0000359!2.76e-08!32|ontology_enrichment_celltype_v019=CL:0000136;5.81e-12;13!CL:0002620;7.67e-10;23!CL:0000359;1.52e-08;32!CL:0000192;5.55e-07;43|ontology_enrichment_celltype_v019_2=CL:0000057,2.55e-15,76;CL:0000136,1.27e-12,15;CL:0000680,1.73e-12,58;CL:0000056,1.73e-12,58;CL:0000355,1.73e-12,58;CL:0000187,9.53e-11,55;CL:0002620,6.34e-10,23;CL:0000359,8.91e-09,32;CL:0000393,1.55e-08,61;CL:0000211,1.55e-08,61;CL:0000192,3.69e-08,43;CL:0000514,3.69e-08,43;CL:0000048,6.14e-07,427|ontology_enrichment_development_v019=CL:0000514;5.55e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!3.02e-20!83;UBERON:0002329!3.02e-20!83;UBERON:0003077!3.02e-20!83;UBERON:0003059!3.02e-20!83;UBERON:0007282!3.02e-20!83;UBERON:0009618!3.02e-20!83;UBERON:0007285!3.02e-20!83;UBERON:0004290!4.03e-17!70;UBERON:0000475!4.64e-17!365;UBERON:0002385!3.04e-14!63;UBERON:0001015!3.04e-14!63;UBERON:0000383!3.04e-14!63;UBERON:0001134!1.23e-13!61;UBERON:0002036!1.23e-13!61;UBERON:0003082!1.23e-13!61;UBERON:0000481!1.75e-13!347;UBERON:0000486!4.87e-13!82;UBERON:0005256!3.10e-12!143;UBERON:0003102!1.08e-10!95;UBERON:0002199!8.24e-09!45;UBERON:0002416!8.24e-09!45;UBERON:0000119!1.71e-08!312;UBERON:0002100!2.08e-08!216;UBERON:0000483!2.16e-08!309;UBERON:0000468!3.42e-08!659;UBERON:0003104!3.06e-07!238;UBERON:0009142!3.06e-07!238;UBERON:0004573!4.25e-07!33;UBERON:0004571!4.25e-07!33;UBERON:0000479!5.08e-07!787;UBERON:0001637!6.58e-07!42;UBERON:0003509!6.58e-07!42;UBERON:0004572!6.58e-07!42|ontology_enrichment_uberon_v019=UBERON:0002385;1.67e-12;31!UBERON:0001015;1.67e-12;31!UBERON:0000383;1.67e-12;31!UBERON:0001134;2.05e-10;16!UBERON:0002036;2.05e-10;16!UBERON:0002204;3.31e-10;70!UBERON:0004573;5.20e-08;33!UBERON:0004571;5.20e-08;33!UBERON:0002199;2.20e-07;46!UBERON:0002416;2.20e-07;46!UBERON:0002384;4.14e-07;198!UBERON:0001013;6.90e-07;14|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.79e-18,71;UBERON:0003059,1.79e-18,71;UBERON:0007282,1.79e-18,71;UBERON:0004290,1.79e-18,71;UBERON:0009618,1.79e-18,71;UBERON:0007524,4.22e-18,73;UBERON:0003077,5.94e-18,72;UBERON:0007285,5.94e-18,72;UBERON:0000486,3.26e-15,83;UBERON:0007503,3.85e-15,78;UBERON:0002385,4.94e-15,64;UBERON:0001015,4.94e-15,64;UBERON:0000383,4.94e-15,64;UBERON:0001134,2.65e-14,62;UBERON:0002036,2.65e-14,62;UBERON:0003082,2.65e-14,62;UBERON:0005256,2.31e-11,122;UBERON:0002199,3.92e-11,46;UBERON:0002416,3.92e-11,46;UBERON:0003102,4.21e-11,99;UBERON:0003104,1.54e-10,160;UBERON:0009142,1.54e-10,160;UBERON:0004573,9.75e-09,33;UBERON:0004571,9.75e-09,33;UBERON:0001637,1.96e-08,42;UBERON:0003509,1.96e-08,42;UBERON:0004572,1.96e-08,42;UBERON:0002097,2.12e-08,41;UBERON:0000479,5.89e-07,773;UBERON:0001013,7.03e-07,14|phase1_expression=2.72517568905835,83.9274053652654,30.8690144970177,12.0087958023756,52.2944480479927,1.74467704820074,177.309914717817,21.4784756965123,123.801987766723,0,0,0,0,31.0653545929717,25.8489953067774,2.01697543935533,6.02694528023977,3.65155045193687,3.41552959153355,0.246242116153576,2.65200898617529,1.56727360739044,1.71741592278634,2.05311637609326,2.00868223351684,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,15.1804444001518,11.5307719446255,14.9191914529648,1.5905718941022,3.89307896242109,1.89069634328136,4.21285855178871,1.14185221401064,1.17881167947941,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,3.4409383804245,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0.436094052142534,4.47274756525787,3.03913227994991,13.7705548045748,8.03142538096678,1.41867352879343,2.80338800071154,1.06748995729705,0.49333509683432,3.7345324247972,0,0.163461903113459,0.454072282934794,0,0.937285727335186,22.7876856086134,10.2684927878001,21.2217126383558,2.81842796745036,2.91371299862637,1.96631129383148,33.4812840858025,4.79053837515895,22.8349976398442,13.0680314301026,7.17074094907815,9.10161361938026,5.74894513452991,8.58514181165738,4.8796222750066,10.2513722729148,8.34057479673592,19.9217067269363,17.878329009885,0.340296549480063,4.30535125653269,6.83383644219416,5.0863656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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5959 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9940 | |||
|TSSclassifier=S | |||
|UniProt=Q92781,F8VUB9 | |||
|association_with_transcript=0bp_to_ENST00000257895,ENST00000548486,ENST00000552930,ENST00000553187_5end | |||
|coexpression_cluster_id=C29 | |||
|description=CAGE_peak_1_at_RDH5_5end | |||
|id=chr12:56114169..56114185,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.69e-26!180;CL:0000057!2.03e-16!75;CL:0000680!4.18e-12!57;CL:0000056!4.18e-12!57;CL:0000355!4.18e-12!57;CL:0000183!1.09e-10!59;CL:0000187!1.32e-10!54;CL:0000136!1.98e-10!15;CL:0000192!7.75e-09!42;CL:0000514!7.75e-09!42;CL:0002620!1.23e-08!23;CL:0000393!2.65e-08!60;CL:0000211!2.65e-08!60;CL:0000359!2.76e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000136;5.81e-12;13!CL:0002620;7.67e-10;23!CL:0000359;1.52e-08;32!CL:0000192;5.55e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.55e-15,76;CL:0000136,1.27e-12,15;CL:0000680,1.73e-12,58;CL:0000056,1.73e-12,58;CL:0000355,1.73e-12,58;CL:0000187,9.53e-11,55;CL:0002620,6.34e-10,23;CL:0000359,8.91e-09,32;CL:0000393,1.55e-08,61;CL:0000211,1.55e-08,61;CL:0000192,3.69e-08,43;CL:0000514,3.69e-08,43;CL:0000048,6.14e-07,427 | |||
|ontology_enrichment_development_v019=CL:0000514;5.55e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.02e-20!83;UBERON:0002329!3.02e-20!83;UBERON:0003077!3.02e-20!83;UBERON:0003059!3.02e-20!83;UBERON:0007282!3.02e-20!83;UBERON:0009618!3.02e-20!83;UBERON:0007285!3.02e-20!83;UBERON:0004290!4.03e-17!70;UBERON:0000475!4.64e-17!365;UBERON:0002385!3.04e-14!63;UBERON:0001015!3.04e-14!63;UBERON:0000383!3.04e-14!63;UBERON:0001134!1.23e-13!61;UBERON:0002036!1.23e-13!61;UBERON:0003082!1.23e-13!61;UBERON:0000481!1.75e-13!347;UBERON:0000486!4.87e-13!82;UBERON:0005256!3.10e-12!143;UBERON:0003102!1.08e-10!95;UBERON:0002199!8.24e-09!45;UBERON:0002416!8.24e-09!45;UBERON:0000119!1.71e-08!312;UBERON:0002100!2.08e-08!216;UBERON:0000483!2.16e-08!309;UBERON:0000468!3.42e-08!659;UBERON:0003104!3.06e-07!238;UBERON:0009142!3.06e-07!238;UBERON:0004573!4.25e-07!33;UBERON:0004571!4.25e-07!33;UBERON:0000479!5.08e-07!787;UBERON:0001637!6.58e-07!42;UBERON:0003509!6.58e-07!42;UBERON:0004572!6.58e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.67e-12;31!UBERON:0001015;1.67e-12;31!UBERON:0000383;1.67e-12;31!UBERON:0001134;2.05e-10;16!UBERON:0002036;2.05e-10;16!UBERON:0002204;3.31e-10;70!UBERON:0004573;5.20e-08;33!UBERON:0004571;5.20e-08;33!UBERON:0002199;2.20e-07;46!UBERON:0002416;2.20e-07;46!UBERON:0002384;4.14e-07;198!UBERON:0001013;6.90e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.79e-18,71;UBERON:0003059,1.79e-18,71;UBERON:0007282,1.79e-18,71;UBERON:0004290,1.79e-18,71;UBERON:0009618,1.79e-18,71;UBERON:0007524,4.22e-18,73;UBERON:0003077,5.94e-18,72;UBERON:0007285,5.94e-18,72;UBERON:0000486,3.26e-15,83;UBERON:0007503,3.85e-15,78;UBERON:0002385,4.94e-15,64;UBERON:0001015,4.94e-15,64;UBERON:0000383,4.94e-15,64;UBERON:0001134,2.65e-14,62;UBERON:0002036,2.65e-14,62;UBERON:0003082,2.65e-14,62;UBERON:0005256,2.31e-11,122;UBERON:0002199,3.92e-11,46;UBERON:0002416,3.92e-11,46;UBERON:0003102,4.21e-11,99;UBERON:0003104,1.54e-10,160;UBERON:0009142,1.54e-10,160;UBERON:0004573,9.75e-09,33;UBERON:0004571,9.75e-09,33;UBERON:0001637,1.96e-08,42;UBERON:0003509,1.96e-08,42;UBERON:0004572,1.96e-08,42;UBERON:0002097,2.12e-08,41;UBERON:0000479,5.89e-07,773;UBERON:0001013,7.03e-07,14 | |||
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| |||
|short_description=p1@RDH5 | |||
}} |
Revision as of 23:27, 10 September 2013
Short description: | p1@RDH5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RDH5_5end |
Coexpression cluster: | C29_mature_adipose_Adipocyte_breast_Lymphatic_vein_heart |
Association with transcript: | 0bp_to_ENST00000257895, ENST00000548486, ENST00000552930, ENST00000553187_5end |
EntrezGene: | RDH5 |
HGNC: | 9940 |
UniProt: | Q92781F8VUB9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.55e-15 | 76 |
fat cell | 1.27e-12 | 15 |
muscle precursor cell | 1.73e-12 | 58 |
myoblast | 1.73e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.73e-12 | 58 |
muscle cell | 9.53e-11 | 55 |
skin fibroblast | 6.34e-10 | 23 |
vascular associated smooth muscle cell | 8.91e-09 | 32 |
electrically responsive cell | 1.55e-08 | 61 |
electrically active cell | 1.55e-08 | 61 |
smooth muscle cell | 3.69e-08 | 43 |
smooth muscle myoblast | 3.69e-08 | 43 |
multi fate stem cell | 6.14e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
somite | 1.79e-18 | 71 |
presomitic mesoderm | 1.79e-18 | 71 |
presumptive segmental plate | 1.79e-18 | 71 |
dermomyotome | 1.79e-18 | 71 |
trunk paraxial mesoderm | 1.79e-18 | 71 |
dense mesenchyme tissue | 4.22e-18 | 73 |
paraxial mesoderm | 5.94e-18 | 72 |
presumptive paraxial mesoderm | 5.94e-18 | 72 |
multilaminar epithelium | 3.26e-15 | 83 |
epithelial vesicle | 3.85e-15 | 78 |
muscle tissue | 4.94e-15 | 64 |
musculature | 4.94e-15 | 64 |
musculature of body | 4.94e-15 | 64 |
skeletal muscle tissue | 2.65e-14 | 62 |
striated muscle tissue | 2.65e-14 | 62 |
myotome | 2.65e-14 | 62 |
trunk mesenchyme | 2.31e-11 | 122 |
integument | 3.92e-11 | 46 |
integumental system | 3.92e-11 | 46 |
surface structure | 4.21e-11 | 99 |
mesenchyme | 1.54e-10 | 160 |
entire embryonic mesenchyme | 1.54e-10 | 160 |
systemic artery | 9.75e-09 | 33 |
systemic arterial system | 9.75e-09 | 33 |
artery | 1.96e-08 | 42 |
arterial blood vessel | 1.96e-08 | 42 |
arterial system | 1.96e-08 | 42 |
skin of body | 2.12e-08 | 41 |
tissue | 5.89e-07 | 773 |
adipose tissue | 7.03e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.