FFCP PHASE1:Hg19::chr12:120632733..120632753,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10985|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4199|TSSclassifier=W|UniProt=Q92616|association_with_transcript=-220bp_to_ENST00000300648,NM_006836,uc001txo.2_5end|description=CAGE_peak_3_at_GCN1L1_5end|id=chr12:120632733..120632753,-|ontology_enrichment_celltype=CL:0002139!3.27e-13!24;CL:0000115!2.50e-11!35;CL:0000071!2.72e-10!18;CL:0002546!2.72e-10!18;CL:0000012!3.41e-10!682;CL:0000548!4.00e-10!679;CL:0000004!4.00e-10!679;CL:0000255!4.00e-10!679;CL:0002078!3.85e-09!44;CL:0000144!9.35e-09!625;CL:0000222!3.69e-08!119;CL:0002371!8.29e-08!591;CL:0000213!3.79e-07!57;CL:0000215!3.79e-07!57;CL:0000003!7.17e-07!722|ontology_enrichment_celltype_v019=CL:0000071;9.97e-30;18!CL:0002139;8.66e-28;24!CL:0000115;5.49e-24;36!CL:0002078;6.14e-15;45!CL:1000413;1.45e-13;9!CL:0000213;2.24e-12;58!CL:0000215;2.24e-12;58!CL:0002543;3.78e-11;6!CL:0000623;3.10e-09;3!CL:0002144;1.35e-08;3!CL:0002592;1.35e-08;3!CL:0002544;2.58e-07;6|ontology_enrichment_celltype_v019_2=CL:0000071,5.08e-30,18;CL:0002546,5.08e-30,18;CL:0000115,1.13e-29,36;CL:0002139,3.85e-28,24;CL:0002078,1.68e-22,45;CL:0000213,4.12e-16,58;CL:0000215,4.12e-16,58;CL:0000222,1.07e-15,121;CL:1000413,1.20e-13,9;CL:0002543,2.05e-11,6;CL:0000623,2.63e-09,3;CL:0000825,2.63e-09,3;CL:0002144,1.57e-08,3;CL:0002592,2.32e-08,3;CL:0002544,2.61e-07,6;CL:0000076,6.73e-07,63|ontology_enrichment_development_v019=CL:0002546;9.97e-30;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002049!6.33e-11!79;UBERON:0007798!6.33e-11!79;UBERON:0001986!2.72e-10!18;UBERON:0004638!2.72e-10!18;UBERON:0004852!2.72e-10!18;UBERON:0000055!1.12e-09!69;UBERON:0004535!7.88e-09!110;UBERON:0000487!4.40e-08!22;UBERON:0001009!4.79e-08!113;UBERON:0001981!7.72e-08!60;UBERON:0007500!7.72e-08!60;UBERON:0004537!7.72e-08!60;UBERON:0006965!7.72e-08!60;UBERON:0003914!1.96e-07!118;UBERON:0004872!2.84e-07!84;UBERON:0000490!3.10e-07!138;UBERON:0006914!5.49e-07!25|ontology_enrichment_uberon_v019=UBERON:0004638;9.97e-30;18!UBERON:0001986;9.97e-30;18!UBERON:0004852;9.97e-30;18!UBERON:0000487;1.36e-23;22!UBERON:0006914;2.77e-20;25!UBERON:0000490;9.54e-15;33!UBERON:0003915;1.45e-13;9!UBERON:0004700;1.45e-13;9!UBERON:0001917;1.45e-13;9!UBERON:0007500;2.43e-12;56!UBERON:0001981;2.43e-12;56!UBERON:0004537;2.43e-12;56!UBERON:0003914;1.22e-08;74!UBERON:0003498;1.35e-08;3!UBERON:0010523;1.35e-08;3!UBERON:0005985;1.35e-08;3!UBERON:0001915;1.35e-08;3!UBERON:0001621;1.35e-08;3!UBERON:0001982;1.35e-08;3!UBERON:0001637;1.62e-08;42!UBERON:0003509;1.62e-08;42!UBERON:0004572;1.62e-08;42!UBERON:0000055;2.02e-07;65!UBERON:0002049;2.18e-07;75!UBERON:0007798;2.18e-07;75!UBERON:0001638;2.72e-07;9!UBERON:0003920;2.72e-07;9!UBERON:0004582;2.72e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0004638,5.08e-30,18;UBERON:0001986,5.08e-30,18;UBERON:0004852,5.08e-30,18;UBERON:0000487,7.94e-24,22;UBERON:0006914,1.73e-20,25;UBERON:0000055,1.87e-17,68;UBERON:0007500,2.19e-17,59;UBERON:0001981,2.19e-17,59;UBERON:0004537,2.19e-17,59;UBERON:0006965,2.19e-17,59;UBERON:0002049,4.78e-17,78;UBERON:0007798,4.78e-17,78;UBERON:0003915,1.20e-13,9;UBERON:0004700,1.20e-13,9;UBERON:0001917,1.20e-13,9;UBERON:0004535,3.75e-11,109;UBERON:0001009,1.14e-10,112;UBERON:0004872,1.25e-10,83;UBERON:0000490,1.47e-09,148;UBERON:0003914,4.34e-09,117;UBERON:0001637,8.03e-09,42;UBERON:0003509,8.03e-09,42;UBERON:0004572,8.03e-09,42;UBERON:0010523,1.57e-08,3;UBERON:0001915,1.57e-08,3;UBERON:0001982,1.57e-08,3;UBERON:0001621,2.32e-08,3;UBERON:0003498,2.90e-08,5;UBERON:0005985,2.90e-08,5;UBERON:0001638,1.84e-07,9;UBERON:0003920,1.84e-07,9;UBERON:0004582,1.84e-07,9|phase1_expression=0,0.428201047781966,0.140954404095971,0,0,0,2.53299878168311,1.26343974685366,0.522371256399677,0,1.39560233594486,0.436882744260345,0.263766978228454,0.866364470720326,0,0,0,0,0,0,0.612002073732759,0,0,0.410623275218653,0.251085279189606,0,0.164201178899891,0,1.18009283054671,1.53531759238885,0.619264493264304,0.919421224478927,0,0,0.387336002901508,0,0,0,0.802177789880567,0.651032612147555,0,0,0,0,0,0.242584061187816,0,0,0,0,0.256160706529101,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,1.12101712596307,0,0.786839080455332,1.96505381374582,1.85041349099558,0,0,0,0,0.557052284425868,0.589211814949674,0.443067789167242,0,0.512365278902701,0.390178042679635,0,0,0,0,0,0,0,0.766440987203842,0.34362744548263,0.759059076058509,0,0,0,0,0,0,0,0,5.24177532384304,6.41856469880418,3.18613688542158,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0.189069634328136,0.443458794925128,0.614843499851882,0.0654895377488563,0,0,0,1.39303789839414,0.930705723632056,0.238490624305342,0,0,1.98762407366705,0,2.08284300964557,2.26123176769604,1.25849830862972,2.20094433552054,1.8809546988313,2.06733407335463,0.71153252537342,0.66944122552934,1.20848795132744,1.52054421143703,3.1728067481262,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10985 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4199 | |||
|TSSclassifier=W | |||
|UniProt=Q92616 | |||
|association_with_transcript=-220bp_to_ENST00000300648,NM_006836,uc001txo.2_5end | |||
|description=CAGE_peak_3_at_GCN1L1_5end | |||
|id=chr12:120632733..120632753,- | |||
|ontology_enrichment_celltype=CL:0002139!3.27e-13!24;CL:0000115!2.50e-11!35;CL:0000071!2.72e-10!18;CL:0002546!2.72e-10!18;CL:0000012!3.41e-10!682;CL:0000548!4.00e-10!679;CL:0000004!4.00e-10!679;CL:0000255!4.00e-10!679;CL:0002078!3.85e-09!44;CL:0000144!9.35e-09!625;CL:0000222!3.69e-08!119;CL:0002371!8.29e-08!591;CL:0000213!3.79e-07!57;CL:0000215!3.79e-07!57;CL:0000003!7.17e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000071;9.97e-30;18!CL:0002139;8.66e-28;24!CL:0000115;5.49e-24;36!CL:0002078;6.14e-15;45!CL:1000413;1.45e-13;9!CL:0000213;2.24e-12;58!CL:0000215;2.24e-12;58!CL:0002543;3.78e-11;6!CL:0000623;3.10e-09;3!CL:0002144;1.35e-08;3!CL:0002592;1.35e-08;3!CL:0002544;2.58e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000071,5.08e-30,18;CL:0002546,5.08e-30,18;CL:0000115,1.13e-29,36;CL:0002139,3.85e-28,24;CL:0002078,1.68e-22,45;CL:0000213,4.12e-16,58;CL:0000215,4.12e-16,58;CL:0000222,1.07e-15,121;CL:1000413,1.20e-13,9;CL:0002543,2.05e-11,6;CL:0000623,2.63e-09,3;CL:0000825,2.63e-09,3;CL:0002144,1.57e-08,3;CL:0002592,2.32e-08,3;CL:0002544,2.61e-07,6;CL:0000076,6.73e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;9.97e-30;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!6.33e-11!79;UBERON:0007798!6.33e-11!79;UBERON:0001986!2.72e-10!18;UBERON:0004638!2.72e-10!18;UBERON:0004852!2.72e-10!18;UBERON:0000055!1.12e-09!69;UBERON:0004535!7.88e-09!110;UBERON:0000487!4.40e-08!22;UBERON:0001009!4.79e-08!113;UBERON:0001981!7.72e-08!60;UBERON:0007500!7.72e-08!60;UBERON:0004537!7.72e-08!60;UBERON:0006965!7.72e-08!60;UBERON:0003914!1.96e-07!118;UBERON:0004872!2.84e-07!84;UBERON:0000490!3.10e-07!138;UBERON:0006914!5.49e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;9.97e-30;18!UBERON:0001986;9.97e-30;18!UBERON:0004852;9.97e-30;18!UBERON:0000487;1.36e-23;22!UBERON:0006914;2.77e-20;25!UBERON:0000490;9.54e-15;33!UBERON:0003915;1.45e-13;9!UBERON:0004700;1.45e-13;9!UBERON:0001917;1.45e-13;9!UBERON:0007500;2.43e-12;56!UBERON:0001981;2.43e-12;56!UBERON:0004537;2.43e-12;56!UBERON:0003914;1.22e-08;74!UBERON:0003498;1.35e-08;3!UBERON:0010523;1.35e-08;3!UBERON:0005985;1.35e-08;3!UBERON:0001915;1.35e-08;3!UBERON:0001621;1.35e-08;3!UBERON:0001982;1.35e-08;3!UBERON:0001637;1.62e-08;42!UBERON:0003509;1.62e-08;42!UBERON:0004572;1.62e-08;42!UBERON:0000055;2.02e-07;65!UBERON:0002049;2.18e-07;75!UBERON:0007798;2.18e-07;75!UBERON:0001638;2.72e-07;9!UBERON:0003920;2.72e-07;9!UBERON:0004582;2.72e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,5.08e-30,18;UBERON:0001986,5.08e-30,18;UBERON:0004852,5.08e-30,18;UBERON:0000487,7.94e-24,22;UBERON:0006914,1.73e-20,25;UBERON:0000055,1.87e-17,68;UBERON:0007500,2.19e-17,59;UBERON:0001981,2.19e-17,59;UBERON:0004537,2.19e-17,59;UBERON:0006965,2.19e-17,59;UBERON:0002049,4.78e-17,78;UBERON:0007798,4.78e-17,78;UBERON:0003915,1.20e-13,9;UBERON:0004700,1.20e-13,9;UBERON:0001917,1.20e-13,9;UBERON:0004535,3.75e-11,109;UBERON:0001009,1.14e-10,112;UBERON:0004872,1.25e-10,83;UBERON:0000490,1.47e-09,148;UBERON:0003914,4.34e-09,117;UBERON:0001637,8.03e-09,42;UBERON:0003509,8.03e-09,42;UBERON:0004572,8.03e-09,42;UBERON:0010523,1.57e-08,3;UBERON:0001915,1.57e-08,3;UBERON:0001982,1.57e-08,3;UBERON:0001621,2.32e-08,3;UBERON:0003498,2.90e-08,5;UBERON:0005985,2.90e-08,5;UBERON:0001638,1.84e-07,9;UBERON:0003920,1.84e-07,9;UBERON:0004582,1.84e-07,9 | |||
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| |||
|short_description=p3@GCN1L1 | |||
}} |
Revision as of 21:15, 10 September 2013
Short description: | p3@GCN1L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_GCN1L1_5end |
Coexpression cluster: | NA |
Association with transcript: | -220bp_to_ENST00000300648, NM_006836, uc001txo.2_5end |
EntrezGene: | GCN1L1 |
HGNC: | 4199 |
UniProt: | Q92616 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood vessel endothelial cell | 5.08e-30 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.08e-30 | 18 |
endothelial cell | 1.13e-29 | 36 |
endothelial cell of vascular tree | 3.85e-28 | 24 |
meso-epithelial cell | 1.68e-22 | 45 |
lining cell | 4.12e-16 | 58 |
barrier cell | 4.12e-16 | 58 |
mesodermal cell | 1.07e-15 | 121 |
endothelial cell of artery | 1.20e-13 | 9 |
vein endothelial cell | 2.05e-11 | 6 |
natural killer cell | 2.63e-09 | 3 |
pro-NK cell | 2.63e-09 | 3 |
capillary endothelial cell | 1.57e-08 | 3 |
smooth muscle cell of the coronary artery | 2.32e-08 | 3 |
aortic endothelial cell | 2.61e-07 | 6 |
squamous epithelial cell | 6.73e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 5.08e-30 | 18 |
endothelium | 5.08e-30 | 18 |
cardiovascular system endothelium | 5.08e-30 | 18 |
simple squamous epithelium | 7.94e-24 | 22 |
squamous epithelium | 1.73e-20 | 25 |
vessel | 1.87e-17 | 68 |
epithelial tube open at both ends | 2.19e-17 | 59 |
blood vessel | 2.19e-17 | 59 |
blood vasculature | 2.19e-17 | 59 |
vascular cord | 2.19e-17 | 59 |
vasculature | 4.78e-17 | 78 |
vascular system | 4.78e-17 | 78 |
endothelial tube | 1.20e-13 | 9 |
arterial system endothelium | 1.20e-13 | 9 |
endothelium of artery | 1.20e-13 | 9 |
cardiovascular system | 3.75e-11 | 109 |
circulatory system | 1.14e-10 | 112 |
splanchnic layer of lateral plate mesoderm | 1.25e-10 | 83 |
unilaminar epithelium | 1.47e-09 | 148 |
epithelial tube | 4.34e-09 | 117 |
artery | 8.03e-09 | 42 |
arterial blood vessel | 8.03e-09 | 42 |
arterial system | 8.03e-09 | 42 |
microcirculatory vessel | 1.57e-08 | 3 |
endothelium of capillary | 1.57e-08 | 3 |
capillary | 1.57e-08 | 3 |
coronary artery | 2.32e-08 | 3 |
heart blood vessel | 2.90e-08 | 5 |
coronary vessel | 2.90e-08 | 5 |
vein | 1.84e-07 | 9 |
venous blood vessel | 1.84e-07 | 9 |
venous system | 1.84e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.