FFCP PHASE1:Hg19::chr13:76210300..76210321,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4008|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6646|TSSclassifier=S|UniProt=E9PMP7|association_with_transcript=-137bp_to_ENST00000377499,uc001vjt.1_5end|coexpression_cluster_id=C1189|description=CAGE_peak_19_at_LMO7_5end|id=chr13:76210300..76210321,+|ontology_enrichment_celltype=CL:0000055!1.25e-37!180;CL:0000057!6.64e-26!75;CL:0002620!3.49e-11!23;CL:0000680!4.06e-11!57;CL:0000056!4.06e-11!57;CL:0000355!4.06e-11!57;CL:0000048!4.76e-11!430;CL:0000723!2.32e-10!436;CL:0000192!6.73e-10!42;CL:0000514!6.73e-10!42;CL:0000034!1.73e-09!444;CL:0000187!2.78e-09!54;CL:0000144!4.78e-09!625;CL:0000222!1.05e-08!119;CL:0000393!1.14e-08!60;CL:0000211!1.14e-08!60;CL:0002371!1.84e-08!591;CL:0000183!2.15e-08!59;CL:0000359!8.42e-08!32;CL:0002334!2.87e-07!12;CL:0000548!5.07e-07!679;CL:0000004!5.07e-07!679;CL:0000255!5.07e-07!679;CL:0000012!9.19e-07!682|ontology_enrichment_celltype_v019=CL:0002620;6.76e-14;23!CL:0000056;1.28e-09;4!CL:0002579;2.87e-08;3!CL:0000057;4.09e-08;73!CL:0002580;4.82e-08;3!CL:0000515;2.45e-07;3!CL:0002615;3.37e-07;3!CL:0002622;5.21e-07;3!CL:0002334;7.40e-07;12|ontology_enrichment_celltype_v019_2=CL:0000057,7.14e-21,76;CL:0002620,5.20e-14,23;CL:0000048,2.72e-10,427;CL:0000723,6.56e-10,433;CL:0000515,1.07e-09,4;CL:0000034,2.03e-09,441;CL:0002579,3.11e-08,3;CL:0002580,4.64e-08,3;CL:0002320,1.26e-07,361;CL:0000134,1.42e-07,354;CL:0002615,2.98e-07,3;CL:0002334,7.53e-07,12;CL:0002622,7.53e-07,3|ontology_enrichment_development_v019=CL:0000515;1.28e-09;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002385!1.73e-10!63;UBERON:0001015!1.73e-10!63;UBERON:0000383!1.73e-10!63;UBERON:0001134!1.77e-10!61;UBERON:0002036!1.77e-10!61;UBERON:0003082!1.77e-10!61;UBERON:0000914!2.12e-10!83;UBERON:0002329!2.12e-10!83;UBERON:0003077!2.12e-10!83;UBERON:0003059!2.12e-10!83;UBERON:0007282!2.12e-10!83;UBERON:0009618!2.12e-10!83;UBERON:0007285!2.12e-10!83;UBERON:0004872!2.17e-09!84;UBERON:0004290!4.03e-09!70;UBERON:0003102!2.02e-08!95;UBERON:0000486!6.60e-08!82;UBERON:0003688!2.83e-07!6;UBERON:0002358!2.83e-07!6;UBERON:0003684!2.83e-07!6;UBERON:0001178!2.83e-07!6;UBERON:0004535!3.80e-07!110;UBERON:0002199!8.40e-07!45;UBERON:0002416!8.40e-07!45|ontology_enrichment_uberon_v019=UBERON:0003688;8.90e-14;6!UBERON:0002358;8.90e-14;6!UBERON:0003684;8.90e-14;6!UBERON:0001178;8.90e-14;6!UBERON:0004457;9.73e-12;9!UBERON:0000042;9.73e-12;9!UBERON:0002097;3.31e-08;41!UBERON:0002199;2.50e-07;46!UBERON:0002416;2.50e-07;46|ontology_enrichment_uberon_v019_2=UBERON:0003688,8.43e-14,6;UBERON:0002358,8.43e-14,6;UBERON:0003684,8.43e-14,6;UBERON:0001178,8.43e-14,6;UBERON:0002097,1.44e-11,41;UBERON:0002199,7.65e-10,46;UBERON:0002416,7.65e-10,46;UBERON:0004457,1.29e-08,12;UBERON:0000042,1.29e-08,12;UBERON:0003102,2.44e-08,99;UBERON:0002384,3.67e-08,371|phase1_expression=1.2717486548939,1.49870366723688,1.9733616573436,3.00219895059391,1.34088328328186,2.61701557230111,0,0,0.261185628199839,0,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0,0.123121058076788,0.612002073732759,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639312809217652,2.53007406669196,3.50936537445123,1.44846518960824,0,1.45990461090791,0.0945348171640679,0.221729397462564,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.488124115096339,0,0,0,0.22452937262617,0,1.53316637465883,0,0.183201743930407,0,0,0,8.94549513051573,4.30543739659571,3.44263870114369,3.15520282823695,0.354668382198357,5.60677600142307,1.06748995729705,0.49333509683432,1.55605517699883,0.269421344139376,0.326923806226917,0.454072282934794,0,0,0,0,0.298897361103602,0,0,0,0.204154171254893,0.122834317311768,0,2.37600571456411,2.47266929278557,0,0,0.168336113954066,0,0.277064115484183,2.63386572528503,3.98434134538726,0.901428353439581,0.907457465280168,7.35497506324334,2.56268866582281,1.90738711043606,0.900273288253207,0.721367704669072,2.83404594050192,2.79175284497385,3.54430297706659,2.43592512902997,1.51460264546469,2.30124746605748,2.7479829659198,2.4850671476163,2.31729825923573,1.01736355386293,0,0,0,0,0,0,0,0,0,0,1.28648187638577,0,2.3218396401599,1.44375896333917,0.118306800039844,0,0,0,0,0,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0.821860859650752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.672786506072164,0,0.22001485746285,1.68053230485111,0,0,0.797814349754612,0,0,1.41849132023278,0.532844358032199,0.142977993658148,0,0,0.325736184293735,0,0,0,0.871533458600294,0.099972991182057,0,0,0,5.75099653179798,1.14861935834114,4.27910715122155,2.60606352001643,2.05476322550383,1.79060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,1.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4008 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |||
|TSSclassifier=S | |||
|UniProt=E9PMP7 | |||
|association_with_transcript=-137bp_to_ENST00000377499,uc001vjt.1_5end | |||
|coexpression_cluster_id=C1189 | |||
|description=CAGE_peak_19_at_LMO7_5end | |||
|id=chr13:76210300..76210321,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.25e-37!180;CL:0000057!6.64e-26!75;CL:0002620!3.49e-11!23;CL:0000680!4.06e-11!57;CL:0000056!4.06e-11!57;CL:0000355!4.06e-11!57;CL:0000048!4.76e-11!430;CL:0000723!2.32e-10!436;CL:0000192!6.73e-10!42;CL:0000514!6.73e-10!42;CL:0000034!1.73e-09!444;CL:0000187!2.78e-09!54;CL:0000144!4.78e-09!625;CL:0000222!1.05e-08!119;CL:0000393!1.14e-08!60;CL:0000211!1.14e-08!60;CL:0002371!1.84e-08!591;CL:0000183!2.15e-08!59;CL:0000359!8.42e-08!32;CL:0002334!2.87e-07!12;CL:0000548!5.07e-07!679;CL:0000004!5.07e-07!679;CL:0000255!5.07e-07!679;CL:0000012!9.19e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.76e-14;23!CL:0000056;1.28e-09;4!CL:0002579;2.87e-08;3!CL:0000057;4.09e-08;73!CL:0002580;4.82e-08;3!CL:0000515;2.45e-07;3!CL:0002615;3.37e-07;3!CL:0002622;5.21e-07;3!CL:0002334;7.40e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.14e-21,76;CL:0002620,5.20e-14,23;CL:0000048,2.72e-10,427;CL:0000723,6.56e-10,433;CL:0000515,1.07e-09,4;CL:0000034,2.03e-09,441;CL:0002579,3.11e-08,3;CL:0002580,4.64e-08,3;CL:0002320,1.26e-07,361;CL:0000134,1.42e-07,354;CL:0002615,2.98e-07,3;CL:0002334,7.53e-07,12;CL:0002622,7.53e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000515;1.28e-09;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!1.73e-10!63;UBERON:0001015!1.73e-10!63;UBERON:0000383!1.73e-10!63;UBERON:0001134!1.77e-10!61;UBERON:0002036!1.77e-10!61;UBERON:0003082!1.77e-10!61;UBERON:0000914!2.12e-10!83;UBERON:0002329!2.12e-10!83;UBERON:0003077!2.12e-10!83;UBERON:0003059!2.12e-10!83;UBERON:0007282!2.12e-10!83;UBERON:0009618!2.12e-10!83;UBERON:0007285!2.12e-10!83;UBERON:0004872!2.17e-09!84;UBERON:0004290!4.03e-09!70;UBERON:0003102!2.02e-08!95;UBERON:0000486!6.60e-08!82;UBERON:0003688!2.83e-07!6;UBERON:0002358!2.83e-07!6;UBERON:0003684!2.83e-07!6;UBERON:0001178!2.83e-07!6;UBERON:0004535!3.80e-07!110;UBERON:0002199!8.40e-07!45;UBERON:0002416!8.40e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;8.90e-14;6!UBERON:0002358;8.90e-14;6!UBERON:0003684;8.90e-14;6!UBERON:0001178;8.90e-14;6!UBERON:0004457;9.73e-12;9!UBERON:0000042;9.73e-12;9!UBERON:0002097;3.31e-08;41!UBERON:0002199;2.50e-07;46!UBERON:0002416;2.50e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,8.43e-14,6;UBERON:0002358,8.43e-14,6;UBERON:0003684,8.43e-14,6;UBERON:0001178,8.43e-14,6;UBERON:0002097,1.44e-11,41;UBERON:0002199,7.65e-10,46;UBERON:0002416,7.65e-10,46;UBERON:0004457,1.29e-08,12;UBERON:0000042,1.29e-08,12;UBERON:0003102,2.44e-08,99;UBERON:0002384,3.67e-08,371 | |||
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| |||
|short_description=p19@LMO7 | |||
}} |
Revision as of 02:47, 11 September 2013
Short description: | p19@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_19_at_LMO7_5end |
Coexpression cluster: | C1189_Preadipocyte_Fibroblast_Ewing_mesodermal_Adipocyte_Smooth_osteoclastoma |
Association with transcript: | -137bp_to_ENST00000377499, uc001vjt.1_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | E9PMP7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.14e-21 | 76 |
skin fibroblast | 5.20e-14 | 23 |
multi fate stem cell | 2.72e-10 | 427 |
somatic stem cell | 6.56e-10 | 433 |
skeletal muscle myoblast | 1.07e-09 | 4 |
stem cell | 2.03e-09 | 441 |
omentum preadipocyte | 3.11e-08 | 3 |
preadipocyte of the breast | 4.64e-08 | 3 |
connective tissue cell | 1.26e-07 | 361 |
mesenchymal cell | 1.42e-07 | 354 |
adipocyte of omentum tissue | 2.98e-07 | 3 |
preadipocyte | 7.53e-07 | 12 |
prostate stromal cell | 7.53e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 8.43e-14 | 6 |
peritoneum | 8.43e-14 | 6 |
abdominal cavity | 8.43e-14 | 6 |
visceral peritoneum | 8.43e-14 | 6 |
skin of body | 1.44e-11 | 41 |
integument | 7.65e-10 | 46 |
integumental system | 7.65e-10 | 46 |
cavity lining | 1.29e-08 | 12 |
serous membrane | 1.29e-08 | 12 |
surface structure | 2.44e-08 | 99 |
connective tissue | 3.67e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.