FFCP PHASE1:Hg19::chr17:8213590..8213603,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22899|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15590|TSSclassifier=S|UniProt=O94989|association_with_transcript=0bp_to_uc002glb.1,uc002glc.2_5end|coexpression_cluster_id=C2448|description=CAGE_peak_4_at_ARHGEF15_5end|id=chr17:8213590..8213603,+|ontology_enrichment_celltype=CL:0002139!3.71e-31!24;CL:0000115!7.35e-30!35;CL:0000071!2.90e-24!18;CL:0002546!2.90e-24!18;CL:0002078!1.21e-21!44;CL:0000213!1.69e-14!57;CL:0000215!1.69e-14!57;CL:1000413!2.08e-13!9;CL:0002544!2.24e-09!6;CL:0002543!5.59e-09!6;CL:0005020!1.95e-08!6;CL:0002138!1.95e-08!6;CL:0005022!1.95e-08!6|ontology_enrichment_celltype_v019=CL:0002139;1.98e-36;24!CL:0000071;1.83e-35;18!CL:0000115;3.87e-35;36!CL:1000413;1.87e-21;9!CL:0002078;9.91e-19;45!CL:0002544;9.50e-15;6!CL:0000213;1.77e-14;58!CL:0000215;1.77e-14;58!CL:0002543;9.63e-14;6!CL:0002188;2.11e-08;5!CL:0002618;3.18e-08;3|ontology_enrichment_celltype_v019_2=CL:0000115,2.88e-40,36;CL:0002139,1.19e-36,24;CL:0000071,1.06e-35,18;CL:0002546,1.06e-35,18;CL:0002078,1.16e-30,45;CL:0000213,4.32e-22,58;CL:0000215,4.32e-22,58;CL:1000413,2.25e-21,9;CL:0002544,1.25e-14,6;CL:0002543,5.78e-14,6;CL:0002618,2.28e-08,3;CL:0002188,2.67e-08,5;CL:0000222,4.58e-07,121;CL:0000076,4.62e-07,63|ontology_enrichment_development_v019=CL:0002546;1.83e-35;18!UBERON:0004872;1.37e-08;7!UBERON:0005062;7.58e-07;4!UBERON:0007284;7.58e-07;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.32e-64!115;UBERON:0001986!2.90e-24!18;UBERON:0004638!2.90e-24!18;UBERON:0004852!2.90e-24!18;UBERON:0004111!5.52e-24!241;UBERON:0000477!8.18e-21!286;UBERON:0000025!3.48e-20!194;UBERON:0000487!1.00e-18!22;UBERON:0001049!5.43e-18!57;UBERON:0005068!5.43e-18!57;UBERON:0006241!5.43e-18!57;UBERON:0007135!5.43e-18!57;UBERON:0002616!6.32e-16!59;UBERON:0003080!8.17e-16!42;UBERON:0006914!9.33e-16!25;UBERON:0002780!9.28e-15!41;UBERON:0001890!9.28e-15!41;UBERON:0006240!9.28e-15!41;UBERON:0003075!1.64e-14!86;UBERON:0007284!1.64e-14!86;UBERON:0000955!8.74e-14!69;UBERON:0006238!8.74e-14!69;UBERON:0003915!2.08e-13!9;UBERON:0004700!2.08e-13!9;UBERON:0001917!2.08e-13!9;UBERON:0002346!2.34e-13!90;UBERON:0001017!9.94e-13!82;UBERON:0005743!1.12e-12!86;UBERON:0000055!1.46e-12!69;UBERON:0000483!6.94e-12!309;UBERON:0000119!1.49e-11!312;UBERON:0001893!5.12e-11!34;UBERON:0002020!8.44e-11!34;UBERON:0003528!8.44e-11!34;UBERON:0001869!9.63e-11!32;UBERON:0000073!1.71e-10!94;UBERON:0001016!1.71e-10!94;UBERON:0002791!2.67e-10!33;UBERON:0004872!3.28e-10!84;UBERON:0002619!7.83e-10!22;UBERON:0002049!8.48e-10!79;UBERON:0007798!8.48e-10!79;UBERON:0003056!1.31e-09!61;UBERON:0000468!1.80e-09!659;UBERON:0000153!2.07e-09!129;UBERON:0007811!2.07e-09!129;UBERON:0001981!2.68e-09!60;UBERON:0007500!2.68e-09!60;UBERON:0004537!2.68e-09!60;UBERON:0006965!2.68e-09!60;UBERON:0001009!2.86e-09!113;UBERON:0000467!6.56e-09!625;UBERON:0000480!7.69e-09!626;UBERON:0001950!2.10e-08!20;UBERON:0000956!3.07e-08!25;UBERON:0000203!3.07e-08!25;UBERON:0000033!5.46e-08!123;UBERON:0001638!1.17e-07!9;UBERON:0003920!1.17e-07!9;UBERON:0004582!1.17e-07!9;UBERON:0004535!1.56e-07!110;UBERON:0003103!3.94e-07!69;UBERON:0002298!4.95e-07!8;UBERON:0003914!5.01e-07!118;UBERON:0000481!5.37e-07!347|ontology_enrichment_uberon_v019=UBERON:0004638;1.83e-35;18!UBERON:0001986;1.83e-35;18!UBERON:0004852;1.83e-35;18!UBERON:0000487;3.82e-28;22!UBERON:0006914;3.37e-24;25!UBERON:0003915;1.87e-21;9!UBERON:0004700;1.87e-21;9!UBERON:0001917;1.87e-21;9!UBERON:0000490;6.57e-16;33!UBERON:0001638;4.31e-12;9!UBERON:0003920;4.31e-12;9!UBERON:0004582;4.31e-12;9!UBERON:0003978;4.80e-09;3!UBERON:0000946;4.80e-09;3!UBERON:0004151;6.64e-09;3!UBERON:0000055;6.87e-09;65!UBERON:0007500;1.38e-08;56!UBERON:0001981;1.38e-08;56!UBERON:0004537;1.38e-08;56!UBERON:0001009;1.35e-07;112!UBERON:0007023;3.51e-07;114!UBERON:0007100;4.11e-07;25|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.06e-35,18;UBERON:0001986,1.06e-35,18;UBERON:0004852,1.06e-35,18;UBERON:0000487,2.46e-28,22;UBERON:0007023,6.52e-25,114;UBERON:0006914,2.30e-24,25;UBERON:0003915,2.25e-21,9;UBERON:0004700,2.25e-21,9;UBERON:0001917,2.25e-21,9;UBERON:0000055,1.14e-19,68;UBERON:0007500,5.29e-18,59;UBERON:0001981,5.29e-18,59;UBERON:0004537,5.29e-18,59;UBERON:0006965,5.29e-18,59;UBERON:0004872,1.72e-17,83;UBERON:0002049,3.54e-16,78;UBERON:0007798,3.54e-16,78;UBERON:0001009,9.88e-16,112;UBERON:0004111,6.37e-14,240;UBERON:0003914,2.99e-13,117;UBERON:0004535,1.08e-12,109;UBERON:0001638,2.62e-12,9;UBERON:0003920,2.62e-12,9;UBERON:0004582,2.62e-12,9;UBERON:0000025,3.06e-11,192;UBERON:0003103,1.80e-10,68;UBERON:0003978,4.58e-09,3;UBERON:0009751,4.58e-09,3;UBERON:0000946,4.58e-09,3;UBERON:0002523,4.58e-09,3;UBERON:0005983,4.58e-09,3;UBERON:0002165,4.58e-09,3;UBERON:0002062,4.58e-09,3;UBERON:0007280,4.58e-09,3;UBERON:0004151,6.42e-09,3;UBERON:0004876,1.43e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22899 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15590 | |||
|TSSclassifier=S | |||
|UniProt=O94989 | |||
|association_with_transcript=0bp_to_uc002glb.1,uc002glc.2_5end | |||
|coexpression_cluster_id=C2448 | |||
|description=CAGE_peak_4_at_ARHGEF15_5end | |||
|id=chr17:8213590..8213603,+ | |||
|ontology_enrichment_celltype=CL:0002139!3.71e-31!24;CL:0000115!7.35e-30!35;CL:0000071!2.90e-24!18;CL:0002546!2.90e-24!18;CL:0002078!1.21e-21!44;CL:0000213!1.69e-14!57;CL:0000215!1.69e-14!57;CL:1000413!2.08e-13!9;CL:0002544!2.24e-09!6;CL:0002543!5.59e-09!6;CL:0005020!1.95e-08!6;CL:0002138!1.95e-08!6;CL:0005022!1.95e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.98e-36;24!CL:0000071;1.83e-35;18!CL:0000115;3.87e-35;36!CL:1000413;1.87e-21;9!CL:0002078;9.91e-19;45!CL:0002544;9.50e-15;6!CL:0000213;1.77e-14;58!CL:0000215;1.77e-14;58!CL:0002543;9.63e-14;6!CL:0002188;2.11e-08;5!CL:0002618;3.18e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,2.88e-40,36;CL:0002139,1.19e-36,24;CL:0000071,1.06e-35,18;CL:0002546,1.06e-35,18;CL:0002078,1.16e-30,45;CL:0000213,4.32e-22,58;CL:0000215,4.32e-22,58;CL:1000413,2.25e-21,9;CL:0002544,1.25e-14,6;CL:0002543,5.78e-14,6;CL:0002618,2.28e-08,3;CL:0002188,2.67e-08,5;CL:0000222,4.58e-07,121;CL:0000076,4.62e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;1.83e-35;18!UBERON:0004872;1.37e-08;7!UBERON:0005062;7.58e-07;4!UBERON:0007284;7.58e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.32e-64!115;UBERON:0001986!2.90e-24!18;UBERON:0004638!2.90e-24!18;UBERON:0004852!2.90e-24!18;UBERON:0004111!5.52e-24!241;UBERON:0000477!8.18e-21!286;UBERON:0000025!3.48e-20!194;UBERON:0000487!1.00e-18!22;UBERON:0001049!5.43e-18!57;UBERON:0005068!5.43e-18!57;UBERON:0006241!5.43e-18!57;UBERON:0007135!5.43e-18!57;UBERON:0002616!6.32e-16!59;UBERON:0003080!8.17e-16!42;UBERON:0006914!9.33e-16!25;UBERON:0002780!9.28e-15!41;UBERON:0001890!9.28e-15!41;UBERON:0006240!9.28e-15!41;UBERON:0003075!1.64e-14!86;UBERON:0007284!1.64e-14!86;UBERON:0000955!8.74e-14!69;UBERON:0006238!8.74e-14!69;UBERON:0003915!2.08e-13!9;UBERON:0004700!2.08e-13!9;UBERON:0001917!2.08e-13!9;UBERON:0002346!2.34e-13!90;UBERON:0001017!9.94e-13!82;UBERON:0005743!1.12e-12!86;UBERON:0000055!1.46e-12!69;UBERON:0000483!6.94e-12!309;UBERON:0000119!1.49e-11!312;UBERON:0001893!5.12e-11!34;UBERON:0002020!8.44e-11!34;UBERON:0003528!8.44e-11!34;UBERON:0001869!9.63e-11!32;UBERON:0000073!1.71e-10!94;UBERON:0001016!1.71e-10!94;UBERON:0002791!2.67e-10!33;UBERON:0004872!3.28e-10!84;UBERON:0002619!7.83e-10!22;UBERON:0002049!8.48e-10!79;UBERON:0007798!8.48e-10!79;UBERON:0003056!1.31e-09!61;UBERON:0000468!1.80e-09!659;UBERON:0000153!2.07e-09!129;UBERON:0007811!2.07e-09!129;UBERON:0001981!2.68e-09!60;UBERON:0007500!2.68e-09!60;UBERON:0004537!2.68e-09!60;UBERON:0006965!2.68e-09!60;UBERON:0001009!2.86e-09!113;UBERON:0000467!6.56e-09!625;UBERON:0000480!7.69e-09!626;UBERON:0001950!2.10e-08!20;UBERON:0000956!3.07e-08!25;UBERON:0000203!3.07e-08!25;UBERON:0000033!5.46e-08!123;UBERON:0001638!1.17e-07!9;UBERON:0003920!1.17e-07!9;UBERON:0004582!1.17e-07!9;UBERON:0004535!1.56e-07!110;UBERON:0003103!3.94e-07!69;UBERON:0002298!4.95e-07!8;UBERON:0003914!5.01e-07!118;UBERON:0000481!5.37e-07!347 | |||
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|short_description=p4@ARHGEF15 | |||
}} |
Revision as of 16:42, 11 September 2013
Short description: | p4@ARHGEF15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_ARHGEF15_5end |
Coexpression cluster: | C2448_lung_heart_adipose_uterus_spleen_penis_diaphragm |
Association with transcript: | 0bp_to_uc002glb.1, uc002glc.2_5end |
EntrezGene: | ARHGEF15 |
HGNC: | 15590 |
UniProt: | O94989 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 2.88e-40 | 36 |
endothelial cell of vascular tree | 1.19e-36 | 24 |
blood vessel endothelial cell | 1.06e-35 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.06e-35 | 18 |
meso-epithelial cell | 1.16e-30 | 45 |
lining cell | 4.32e-22 | 58 |
barrier cell | 4.32e-22 | 58 |
endothelial cell of artery | 2.25e-21 | 9 |
aortic endothelial cell | 1.25e-14 | 6 |
vein endothelial cell | 5.78e-14 | 6 |
endothelial cell of umbilical vein | 2.28e-08 | 3 |
glomerular endothelial cell | 2.67e-08 | 5 |
mesodermal cell | 4.58e-07 | 121 |
squamous epithelial cell | 4.62e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.06e-35 | 18 |
endothelium | 1.06e-35 | 18 |
cardiovascular system endothelium | 1.06e-35 | 18 |
simple squamous epithelium | 2.46e-28 | 22 |
adult organism | 6.52e-25 | 114 |
squamous epithelium | 2.30e-24 | 25 |
endothelial tube | 2.25e-21 | 9 |
arterial system endothelium | 2.25e-21 | 9 |
endothelium of artery | 2.25e-21 | 9 |
vessel | 1.14e-19 | 68 |
epithelial tube open at both ends | 5.29e-18 | 59 |
blood vessel | 5.29e-18 | 59 |
blood vasculature | 5.29e-18 | 59 |
vascular cord | 5.29e-18 | 59 |
splanchnic layer of lateral plate mesoderm | 1.72e-17 | 83 |
vasculature | 3.54e-16 | 78 |
vascular system | 3.54e-16 | 78 |
circulatory system | 9.88e-16 | 112 |
anatomical conduit | 6.37e-14 | 240 |
epithelial tube | 2.99e-13 | 117 |
cardiovascular system | 1.08e-12 | 109 |
vein | 2.62e-12 | 9 |
venous blood vessel | 2.62e-12 | 9 |
venous system | 2.62e-12 | 9 |
tube | 3.06e-11 | 192 |
compound organ | 1.80e-10 | 68 |
valve | 4.58e-09 | 3 |
cardiac mesenchyme | 4.58e-09 | 3 |
cardial valve | 4.58e-09 | 3 |
tunica intima | 4.58e-09 | 3 |
heart layer | 4.58e-09 | 3 |
endocardium | 4.58e-09 | 3 |
endocardial cushion | 4.58e-09 | 3 |
presumptive endocardium | 4.58e-09 | 3 |
cardiac chamber | 6.42e-09 | 3 |
urogenital ridge | 1.43e-07 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.