FFCP PHASE1:Hg19::chr22:42322795..42322821,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=115650|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17755|TSSclassifier=S|UniProt=Q96RJ3,Q5H8V1|association_with_transcript=0bp_to_ENST00000291232,NM_052945,uc003bbl.2,uc010gyp.1_5end|coexpression_cluster_id=C179|description=CAGE_peak_1_at_TNFRSF13C_5end|id=chr22:42322795..42322821,-|ontology_enrichment_celltype=CL:0000542!7.25e-21!53;CL:0000051!7.25e-21!53;CL:0000838!3.30e-20!52;CL:0002087!1.13e-19!119;CL:0000738!1.37e-16!140;CL:0000945!1.80e-16!24;CL:0000826!1.80e-16!24;CL:0000037!1.75e-14!172;CL:0000566!1.75e-14!172;CL:0002031!6.25e-14!124;CL:0002032!1.08e-12!165;CL:0000837!1.08e-12!165;CL:0000988!2.39e-12!182;CL:0000236!2.06e-11!14;CL:0000791!1.80e-08!18;CL:0000789!1.80e-08!18;CL:0002420!1.80e-08!18;CL:0002419!1.80e-08!18;CL:0000790!1.80e-08!18|ontology_enrichment_celltype_v019=CL:0000945;2.04e-21;24!CL:0000542;4.48e-17;53!CL:0000236;3.67e-15;13!CL:0000791;3.40e-12;18!CL:0000789;3.40e-12;18!CL:0002419;3.40e-12;18!CL:0002087;6.23e-10;104!CL:0000084;2.71e-09;25!CL:0000625;5.21e-09;11|ontology_enrichment_celltype_v019_2=CL:0000542,4.31e-31,53;CL:0000051,4.31e-31,53;CL:0000838,4.17e-30,52;CL:0002087,1.74e-24,115;CL:0000738,4.18e-22,136;CL:0000945,2.10e-21,24;CL:0000826,2.10e-21,24;CL:0000037,6.60e-20,168;CL:0002031,2.93e-18,120;CL:0000988,1.71e-17,177;CL:0002032,4.42e-17,161;CL:0000837,4.42e-17,161;CL:0000236,3.59e-16,14;CL:0000791,2.88e-12,18;CL:0000789,2.88e-12,18;CL:0002420,2.88e-12,18;CL:0002419,2.88e-12,18;CL:0000790,2.88e-12,18;CL:0000084,2.41e-09,25;CL:0000827,2.41e-09,25;CL:0000625,4.72e-09,11|ontology_enrichment_development_v019=CL:0000051;4.48e-17;53!CL:0000790;3.40e-12;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.45e-21!115;UBERON:0001049!1.92e-07!57;UBERON:0005068!1.92e-07!57;UBERON:0006241!1.92e-07!57;UBERON:0007135!1.92e-07!57|ontology_enrichment_uberon_v019=UBERON:0000178;1.43e-09;15!UBERON:0000179;1.43e-09;15!UBERON:0000463;1.43e-09;15|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.07e-21,114;UBERON:0000178,1.44e-09,15;UBERON:0000179,1.44e-09,15;UBERON:0000463,1.44e-09,15;UBERON:0001049,9.88e-07,56;UBERON:0005068,9.88e-07,56;UBERON:0006241,9.88e-07,56;UBERON:0007135,9.88e-07,56|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0.246242116153576,0.204000691244253,0,0,0,0,48.4460992442011,39.4903835254239,41.6380033149363,3.54027849164014,6.1412703695554,10.9919447554414,0.919421224478927,0,0.369754010166788,0.92960640696362,74.3545085909215,2.34880351467878,1.10799081706375,2.80762226458198,2.17010870715852,1.11957737119962,5.50619232232265,0.257575567634187,0.145398238779565,5.66813915533214,0.242584061187816,0.697287110717054,7.40102198439286,0.309706370895104,0.863077176966451,6.91633907628572,0.236482229888585,1.37898272294647,7.10033151942209,0,0.188242339542605,4.91231070104122,0.449446968890169,1.53041946185451,10.269728866435,1.27867425159808,0.659702600373432,4.78712778291916,1.27867425159808,1.16083695451434,10.2129340444405,0.622822248995575,0.502497330513487,8.34372669472322,0.217188844705117,6.05399502633369,13.9945501675275,0.632924774881769,0,0.212604299965044,0.209658645508376,0,0,0.16072558669708,0.570025487482497,0.39783335439818,1.46131323011707,295.673690695022,302.560790639221,275.747868697702,255.611403317338,340.736984967647,298.296516336377,321.928853046228,271.905320042579,843.573620220203,850.319450209119,1115.47327966942,26.4342657158052,43.1591593495783,1.31692042387539,9.83548850569165,10.6112905942274,8.42966145897988,0,26.3997035973208,27.4599727326145,17.534405556712,0.779873198196215,2.94605907474837,5.09527957542329,6.49929273036037,0.384273959177026,0.780356085359269,0,0,0,6.52460877913066,7.22360235842225,4.18142095219907,0.113309342697566,4.21542542962113,6.8725489096526,5.56643322442906,5.73417745783374,7.1619179924206,10.4549724889321,5.42070428679982,3.71161172347813,6.24653632761729,4.49876778883632,1.64225599384209,15.9269327147539,15.2440911596599,12.4548987339207,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0.175669571386252,2.94702919869853,0,0,0.324547393654683,0.696518949197069,0.26591592103773,6.91622810485492,4.57595928624102,5.94332002127304,0,0,0.347140501607594,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0,0,0,0,14.495845917967,0,0.872188104285069,0,0,0,0,1.06400514659507,0,0,0,0,0,0.163461903113459,0,0,0.234321431833797,1.24864030732128,0,0,0,0.161872944368132,0.140450806702248,0.204154171254893,0.122834317311768,0,0,0.494533858557114,0.910161361938026,0,0.168336113954066,0.250237039743928,0,0,0.30648779579902,0.150238058906597,0,0.358779271377724,0,0.211931901159562,0,0.103052529238439,0,0,0,0,0,0.368199594569197,0.323292113637624,0,0,0,0,0.272746120590835,0.286804595389004,1.58565817968474,1.06023814657188,1.85910308591229,1.14027160516907,1.26160425437814,0,0,4.5026865673502,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=115650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17755 | |||
|TSSclassifier=S | |||
|UniProt=Q96RJ3,Q5H8V1 | |||
|association_with_transcript=0bp_to_ENST00000291232,NM_052945,uc003bbl.2,uc010gyp.1_5end | |||
|coexpression_cluster_id=C179 | |||
|description=CAGE_peak_1_at_TNFRSF13C_5end | |||
|id=chr22:42322795..42322821,- | |||
|ontology_enrichment_celltype=CL:0000542!7.25e-21!53;CL:0000051!7.25e-21!53;CL:0000838!3.30e-20!52;CL:0002087!1.13e-19!119;CL:0000738!1.37e-16!140;CL:0000945!1.80e-16!24;CL:0000826!1.80e-16!24;CL:0000037!1.75e-14!172;CL:0000566!1.75e-14!172;CL:0002031!6.25e-14!124;CL:0002032!1.08e-12!165;CL:0000837!1.08e-12!165;CL:0000988!2.39e-12!182;CL:0000236!2.06e-11!14;CL:0000791!1.80e-08!18;CL:0000789!1.80e-08!18;CL:0002420!1.80e-08!18;CL:0002419!1.80e-08!18;CL:0000790!1.80e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.04e-21;24!CL:0000542;4.48e-17;53!CL:0000236;3.67e-15;13!CL:0000791;3.40e-12;18!CL:0000789;3.40e-12;18!CL:0002419;3.40e-12;18!CL:0002087;6.23e-10;104!CL:0000084;2.71e-09;25!CL:0000625;5.21e-09;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.31e-31,53;CL:0000051,4.31e-31,53;CL:0000838,4.17e-30,52;CL:0002087,1.74e-24,115;CL:0000738,4.18e-22,136;CL:0000945,2.10e-21,24;CL:0000826,2.10e-21,24;CL:0000037,6.60e-20,168;CL:0002031,2.93e-18,120;CL:0000988,1.71e-17,177;CL:0002032,4.42e-17,161;CL:0000837,4.42e-17,161;CL:0000236,3.59e-16,14;CL:0000791,2.88e-12,18;CL:0000789,2.88e-12,18;CL:0002420,2.88e-12,18;CL:0002419,2.88e-12,18;CL:0000790,2.88e-12,18;CL:0000084,2.41e-09,25;CL:0000827,2.41e-09,25;CL:0000625,4.72e-09,11 | |||
|ontology_enrichment_development_v019=CL:0000051;4.48e-17;53!CL:0000790;3.40e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.45e-21!115;UBERON:0001049!1.92e-07!57;UBERON:0005068!1.92e-07!57;UBERON:0006241!1.92e-07!57;UBERON:0007135!1.92e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.43e-09;15!UBERON:0000179;1.43e-09;15!UBERON:0000463;1.43e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.07e-21,114;UBERON:0000178,1.44e-09,15;UBERON:0000179,1.44e-09,15;UBERON:0000463,1.44e-09,15;UBERON:0001049,9.88e-07,56;UBERON:0005068,9.88e-07,56;UBERON:0006241,9.88e-07,56;UBERON:0007135,9.88e-07,56 | |||
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| |||
|short_description=p1@TNFRSF13C | |||
}} |
Revision as of 12:11, 12 September 2013
Short description: | p1@TNFRSF13C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TNFRSF13C_5end |
Coexpression cluster: | C179_CD19_Peripheral_lymphoma_blood_lymph_spleen_tonsil |
Association with transcript: | 0bp_to_ENST00000291232, NM_052945, uc003bbl.2, uc010gyp.1_5end |
EntrezGene: | TNFRSF13C |
HGNC: | 17755 |
UniProt: | Q96RJ3Q5H8V1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.31e-31 | 53 |
common lymphoid progenitor | 4.31e-31 | 53 |
lymphoid lineage restricted progenitor cell | 4.17e-30 | 52 |
nongranular leukocyte | 1.74e-24 | 115 |
leukocyte | 4.18e-22 | 136 |
lymphocyte of B lineage | 2.10e-21 | 24 |
pro-B cell | 2.10e-21 | 24 |
hematopoietic stem cell | 6.60e-20 | 168 |
hematopoietic lineage restricted progenitor cell | 2.93e-18 | 120 |
hematopoietic cell | 1.71e-17 | 177 |
hematopoietic oligopotent progenitor cell | 4.42e-17 | 161 |
hematopoietic multipotent progenitor cell | 4.42e-17 | 161 |
B cell | 3.59e-16 | 14 |
mature alpha-beta T cell | 2.88e-12 | 18 |
alpha-beta T cell | 2.88e-12 | 18 |
immature T cell | 2.88e-12 | 18 |
mature T cell | 2.88e-12 | 18 |
immature alpha-beta T cell | 2.88e-12 | 18 |
T cell | 2.41e-09 | 25 |
pro-T cell | 2.41e-09 | 25 |
CD8-positive, alpha-beta T cell | 4.72e-09 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.07e-21 | 114 |
blood | 1.44e-09 | 15 |
haemolymphatic fluid | 1.44e-09 | 15 |
organism substance | 1.44e-09 | 15 |
neural tube | 9.88e-07 | 56 |
neural rod | 9.88e-07 | 56 |
future spinal cord | 9.88e-07 | 56 |
neural keel | 9.88e-07 | 56 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.