FFCP PHASE1:Hg19::chr3:110790594..110790603,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25945|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17664|TSSclassifier=S|UniProt=Q9NQS3|association_with_transcript=-2bp_to_NM_001243286,NM_015480_5end|description=CAGE_peak_6_at_PVRL3_5end|id=chr3:110790594..110790603,+|ontology_enrichment_celltype=CL:0000055!1.23e-10!180|ontology_enrichment_celltype_v019=CL:0000064;4.44e-12;3!CL:0002573;4.44e-12;2!CL:0000067;4.44e-12;3!CL:0005012;4.44e-12;3!CL:0002304;4.44e-12;3!CL:0000511;1.10e-09;1!CL:0002625;1.10e-09;1!CL:0000228;1.10e-09;1!CL:0000216;1.10e-09;1!CL:0002372;1.10e-09;1|ontology_enrichment_celltype_v019_2=CL:0000064,4.46e-12,3;CL:0000067,4.46e-12,3;CL:0005012,4.46e-12,3;CL:0002304,4.46e-12,3;CL:0002573,8.22e-12,2;CL:0000511,5.31e-10,1;CL:0002625,5.31e-10,1;CL:0000216,5.31e-10,1;CL:0000228,6.88e-10,1;CL:0002372,6.88e-10,1|ontology_enrichment_development_v019=UBERON:0005425;3.90e-10;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3571;1.10e-09;1|ontology_enrichment_disease_v019_2=DOID:3571,1.91e-09,1|ontology_enrichment_uberon=UBERON:0000475!2.49e-08!365;UBERON:0000119!4.44e-08!312;UBERON:0000477!5.81e-08!286;UBERON:0000483!7.43e-08!309;UBERON:0000481!5.73e-07!347|ontology_enrichment_uberon_v019=UBERON:0001778;4.44e-12;3!UBERON:0001775;4.44e-12;3!UBERON:0000941;3.90e-10;1!UBERON:0001785;3.90e-10;1!UBERON:0002464;3.90e-10;1!UBERON:0004904;3.90e-10;1!UBERON:0001021;3.90e-10;1!UBERON:0000473;4.15e-10;8!UBERON:0001136;1.10e-09;1!UBERON:0001343;1.10e-09;1!UBERON:0004910;1.10e-09;1!UBERON:0004813;1.10e-09;1!UBERON:0000488;2.78e-09;4!UBERON:0000010;4.86e-09;8!UBERON:0003135;1.76e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0001778,4.46e-12,3;UBERON:0001775,4.46e-12,3;UBERON:0000473,2.34e-10,8;UBERON:0000941,4.09e-10,1;UBERON:0001785,4.09e-10,1;UBERON:0002464,4.09e-10,1;UBERON:0004904,4.09e-10,1;UBERON:0001021,4.09e-10,1;UBERON:0003902,4.09e-10,1;UBERON:0005425,4.09e-10,1;UBERON:0001136,5.31e-10,1;UBERON:0001343,5.31e-10,1;UBERON:0004910,5.31e-10,1;UBERON:0005154,5.31e-10,1;UBERON:0005295,5.31e-10,1;UBERON:0004813,5.31e-10,1;UBERON:0005297,5.31e-10,1;UBERON:0005294,5.31e-10,1;UBERON:0010141,5.31e-10,1;UBERON:0005891,5.31e-10,1;UBERON:0000488,2.79e-09,4;UBERON:0000010,6.68e-09,8;UBERON:0003135,1.17e-07,11|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0.672325146451775,1.20538905604795,0,0.975865597581014,0.246242116153576,0,0,0.572471974262113,0,0.87879847716362,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.895037932904712,1.0843174571537,0,0.289693037921647,0,0,0.661743720148475,1.10864698731282,1.40535657109002,0.589405839739707,0,0,0,0,0,0,0,0,0.79504962946682,0,0,0,0,0.275118041940067,0.417989933073621,0.775250277507987,1.06729878806013,0.66944122552934,0.402829317109147,0,0.488124115096339,0,0.81014194788176,0.535798369704479,0.22452937262617,0.563057402416611,0,0.949265659568129,0.366403487860815,0,0,0,0,0.25326102332916,0,0.573673241497627,0.709336764396714,0,0,0,1.55605517699883,0.67355336034844,0.163461903113459,0,0.576175924479999,0.70296429550139,0.936480230490962,0,0.448346041655403,0.117434498643765,0.323745888736263,0.280901613404497,0.61246251376468,0.61417158655884,0.929932030581889,0,0.741800787835671,0.910161361938026,0,0.841680569770331,0.250237039743928,0.277064115484183,0,0,0.150238058906597,0.453728732640084,0.179389635688862,0.427114777637135,0.211931901159562,0.600182192168805,0,0.257640540045629,0.18611685633159,0.506328996723799,0.194874010322397,0.252433774244115,0.552299391853796,0.161646056818812,0.355009592516614,0.302256294682921,0.339121184620975,0,0,0.286804595389004,0,0.265059536642971,0.348581828608555,0.10366105501537,0.504641701751257,0.36497735907583,0,1.28648187638577,0,0.464367928031979,0,0,0.168584690078102,0.241011029883482,0.110293972732394,0,0.237270619111097,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0.491953754172454,0.857839051492628,0,0,0.100528972411631,0.185176890317059,0,0,0,0.927443239800615,0.821860859650752,0,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,0,0.581267877027924,0,0,0,0,0,0,0.317489471460845,0.381988425558278,0,0,0.308482478109971,0,1.14330573052231,0.224262168690721,0,0.80672114403045,0.517086863031111,0,0,0.797814349754612,0,0.257207374262142,0,0.799266537048298,0.428933980974443,0,0,0.325736184293735,0.710783897485092,0,0,0,0.499864955910285,0,0,0,0.479249710983165,0,1.42636905040718,0.579125226670317,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0.24538298343828,0,0.271265023699736,0.623912584592421,0.713715955188647,0.315404830067869,0.234282829985426,0,0,0,0.664225598535437,0.184369168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3146374,0.0645889098360061,0.124149428591716,0.448527450322454,0.445530107947154,0,0,0.342233301085281,0.0673520530145875,0.286888821570705,0.332660356546013,0.325613074443898,0.426909383510862,0,0.269475606319761,0,0.244482888365733,0,0,0,0|short_description=p6@PVRL3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=25945 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17664 | |||
|TSSclassifier=S | |||
|UniProt=Q9NQS3 | |||
|association_with_transcript=-2bp_to_NM_001243286,NM_015480_5end | |||
|description=CAGE_peak_6_at_PVRL3_5end | |||
|id=chr3:110790594..110790603,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.23e-10!180 | |||
|ontology_enrichment_celltype_v019=CL:0000064;4.44e-12;3!CL:0002573;4.44e-12;2!CL:0000067;4.44e-12;3!CL:0005012;4.44e-12;3!CL:0002304;4.44e-12;3!CL:0000511;1.10e-09;1!CL:0002625;1.10e-09;1!CL:0000228;1.10e-09;1!CL:0000216;1.10e-09;1!CL:0002372;1.10e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,4.46e-12,3;CL:0000067,4.46e-12,3;CL:0005012,4.46e-12,3;CL:0002304,4.46e-12,3;CL:0002573,8.22e-12,2;CL:0000511,5.31e-10,1;CL:0002625,5.31e-10,1;CL:0000216,5.31e-10,1;CL:0000228,6.88e-10,1;CL:0002372,6.88e-10,1 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.90e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3571;1.10e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,1.91e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000475!2.49e-08!365;UBERON:0000119!4.44e-08!312;UBERON:0000477!5.81e-08!286;UBERON:0000483!7.43e-08!309;UBERON:0000481!5.73e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;4.44e-12;3!UBERON:0001775;4.44e-12;3!UBERON:0000941;3.90e-10;1!UBERON:0001785;3.90e-10;1!UBERON:0002464;3.90e-10;1!UBERON:0004904;3.90e-10;1!UBERON:0001021;3.90e-10;1!UBERON:0000473;4.15e-10;8!UBERON:0001136;1.10e-09;1!UBERON:0001343;1.10e-09;1!UBERON:0004910;1.10e-09;1!UBERON:0004813;1.10e-09;1!UBERON:0000488;2.78e-09;4!UBERON:0000010;4.86e-09;8!UBERON:0003135;1.76e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,4.46e-12,3;UBERON:0001775,4.46e-12,3;UBERON:0000473,2.34e-10,8;UBERON:0000941,4.09e-10,1;UBERON:0001785,4.09e-10,1;UBERON:0002464,4.09e-10,1;UBERON:0004904,4.09e-10,1;UBERON:0001021,4.09e-10,1;UBERON:0003902,4.09e-10,1;UBERON:0005425,4.09e-10,1;UBERON:0001136,5.31e-10,1;UBERON:0001343,5.31e-10,1;UBERON:0004910,5.31e-10,1;UBERON:0005154,5.31e-10,1;UBERON:0005295,5.31e-10,1;UBERON:0004813,5.31e-10,1;UBERON:0005297,5.31e-10,1;UBERON:0005294,5.31e-10,1;UBERON:0010141,5.31e-10,1;UBERON:0005891,5.31e-10,1;UBERON:0000488,2.79e-09,4;UBERON:0000010,6.68e-09,8;UBERON:0003135,1.17e-07,11 | |||
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| |||
|short_description=p6@PVRL3 | |||
}} |
Revision as of 20:42, 12 September 2013
Short description: | p6@PVRL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_PVRL3_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_NM_001243286, NM_015480_5end |
EntrezGene: | PVRL3 |
HGNC: | 17664 |
UniProt: | Q9NQS3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 4.46e-12 | 3 |
ciliated epithelial cell | 4.46e-12 | 3 |
multi-ciliated epithelial cell | 4.46e-12 | 3 |
non-pigmented ciliary epithelial cell | 4.46e-12 | 3 |
Schwann cell | 8.22e-12 | 2 |
androgen binding protein secreting cell | 5.31e-10 | 1 |
seminiferous tubule epithelial cell | 5.31e-10 | 1 |
Sertoli cell | 5.31e-10 | 1 |
multinucleate cell | 6.88e-10 | 1 |
myotube | 6.88e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 4.46e-12 | 3 |
ciliary body | 4.46e-12 | 3 |
testis | 2.34e-10 | 8 |
cranial nerve II | 4.09e-10 | 1 |
cranial nerve | 4.09e-10 | 1 |
nerve trunk | 4.09e-10 | 1 |
nerve connecting eye with brain | 4.09e-10 | 1 |
nerve | 4.09e-10 | 1 |
retinal neural layer | 4.09e-10 | 1 |
presumptive neural retina | 4.09e-10 | 1 |
mesothelium | 5.31e-10 | 1 |
seminiferous tubule of testis | 5.31e-10 | 1 |
epithelium of male gonad | 5.31e-10 | 1 |
epithelial cord | 5.31e-10 | 1 |
sex cord | 5.31e-10 | 1 |
seminiferous tubule epithelium | 5.31e-10 | 1 |
testis sex cord | 5.31e-10 | 1 |
genital ridge | 5.31e-10 | 1 |
primitive sex cord of indifferent gonad | 5.31e-10 | 1 |
coelomic epithelium | 5.31e-10 | 1 |
atypical epithelium | 2.79e-09 | 4 |
peripheral nervous system | 6.68e-09 | 8 |
male reproductive organ | 1.17e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.91e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.