FFCP PHASE1:Hg19::chr5:138629417..138629446,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9782|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6912|TSSclassifier=S|UniProt=Q68E03,B7ZAV5,D6REM6,D6RBK5,P43243|association_with_transcript=0bp_to_ENST00000337359,ENST00000503811,ENST00000507860,ENST00000509918,ENST00000510056,ENST00000511249,ENST00000511978,NM_001194955,NM_001194956_5end|coexpression_cluster_id=C2804|description=CAGE_peak_1_at_MATR3_5end|id=chr5:138629417..138629446,+|ontology_enrichment_celltype=CL:0000542!4.30e-15!53;CL:0000051!4.30e-15!53;CL:0000838!1.05e-14!52;CL:0000738!1.24e-11!140;CL:0000037!1.05e-10!172;CL:0000566!1.05e-10!172;CL:0002031!1.27e-10!124;CL:0002087!1.02e-09!119;CL:0000988!2.35e-09!182;CL:0002032!4.58e-09!165;CL:0000837!4.58e-09!165;CL:0000791!5.04e-08!18;CL:0000789!5.04e-08!18;CL:0002420!5.04e-08!18;CL:0002419!5.04e-08!18;CL:0000790!5.04e-08!18;CL:0000084!7.68e-08!25;CL:0000827!7.68e-08!25;CL:0000945!4.26e-07!24;CL:0000826!4.26e-07!24;CL:0000236!6.91e-07!14|ontology_enrichment_celltype_v019=CL:0000542;4.10e-09;53!CL:0000791;4.97e-08;18!CL:0000789;4.97e-08;18!CL:0002419;4.97e-08;18!CL:0000084;7.51e-08;25!CL:0000945;4.30e-07;24!CL:0000236;7.18e-07;13|ontology_enrichment_celltype_v019_2=CL:0000542,4.30e-15,53;CL:0000051,4.30e-15,53;CL:0000838,1.05e-14,52;CL:0000738,1.31e-11,136;CL:0000037,1.22e-10,168;CL:0002031,1.30e-10,120;CL:0002087,1.06e-09,115;CL:0000988,1.17e-09,177;CL:0002032,5.37e-09,161;CL:0000837,5.37e-09,161;CL:0000791,5.04e-08,18;CL:0000789,5.04e-08,18;CL:0002420,5.04e-08,18;CL:0002419,5.04e-08,18;CL:0000790,5.04e-08,18;CL:0000084,7.68e-08,25;CL:0000827,7.68e-08,25;CL:0000945,4.26e-07,24;CL:0000826,4.26e-07,24;CL:0000236,6.91e-07,14|ontology_enrichment_development_v019=CL:0000051;4.10e-09;53!CL:0000790;4.97e-08;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.16e-11!115;UBERON:0001017!5.69e-10!82;UBERON:0000073!1.69e-09!94;UBERON:0001016!1.69e-09!94;UBERON:0005743!2.54e-09!86;UBERON:0001049!1.29e-07!57;UBERON:0005068!1.29e-07!57;UBERON:0006241!1.29e-07!57;UBERON:0007135!1.29e-07!57;UBERON:0003080!1.31e-07!42;UBERON:0002780!2.60e-07!41;UBERON:0001890!2.60e-07!41;UBERON:0006240!2.60e-07!41|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.14e-11,114;UBERON:0001016,7.78e-10,89;UBERON:0001017,1.08e-09,81;UBERON:0001049,2.43e-07,56;UBERON:0005068,2.43e-07,56;UBERON:0006241,2.43e-07,56;UBERON:0007135,2.43e-07,56;UBERON:0002780,2.60e-07,41;UBERON:0001890,2.60e-07,41;UBERON:0003080,2.60e-07,41;UBERON:0006240,2.60e-07,41;UBERON:0000073,8.16e-07,53;UBERON:0002616,8.16e-07,53|phase1_expression=68.856105743541,54.5956335922007,89.6470010050377,61.0447119954096,72.4076972972206,61.9360352111262,35.4619829435635,56.223068734988,44.1403711657727,16.2184398090996,13.2582221914761,41.2854193326026,11.8695140202804,86.3889143661125,65.2852830183994,68.5771649380811,62.6802309144936,69.3794585868005,48.7932798790507,48.3865758241776,21.8280739631351,18.1803738457291,154.28119706364,92.1164880740511,99.5553131986786,106.367460801148,105.74555921153,100.98593242545,41.6966133459838,144.319853684552,119.827679446643,63.440064489046,17.7711492079168,27.7315507625091,115.271194463489,101.935339693481,136.230603851369,79.2213434200585,90.2450013615638,86.5873374156249,77.4747540870138,109.799952780434,88.348419698526,78.9512436573036,85.0220873299821,75.4436430294108,58.3396882633268,76.8883950600814,108.087523442391,52.0723230103092,67.8825872302117,112.329059197078,63.0884595748012,85.203978233065,104.278394677643,71.5320890261898,108.343741572965,109.215613440311,72.235798599533,109.115869205872,88.2285233602677,56.4045723319285,79.3865357334095,70.7533085884272,78.9369129069749,87.9447098271267,92.1776928513451,70.8521236024016,66.2283306393656,102.947512390225,64.1723472791371,126.687506779722,116.141696190805,116.40166275788,92.2702661848289,96.6526355793613,80.4272999008905,98.3658648111866,95.9531752581568,59.2826506981797,90.507088125586,105.579880875958,135.517108235218,119.604355866407,124.531295540898,121.191383208888,153.351663034793,133.34256606944,130.225839938618,124.981041844133,148.564584937566,169.711547728201,149.086558968839,154.64045443746,166.471043205516,150.392312406569,211.069583332143,126.156454842482,151.939507760637,116.528987287303,157.094532517391,140.613998303216,134.430442601459,124.556890797624,173.228273595204,169.916497145637,159.503475757594,83.3874491414145,86.3594067797592,97.8405532391873,75.7199048733224,106.937338636234,154.662885378029,166.410395071802,132.760115232321,107.417256877293,123.013778446217,121.300488255368,206.970108071953,136.027431916389,123.70585623272,97.8965605781825,168.794708486183,199.915086623202,114.936268428158,140.88246496619,136.307247488894,193.340866752518,113.127202816424,141.927915805143,75.5801285573281,61.0337782330309,105.998063768287,136.623999601366,69.6859695783887,74.0165711889809,83.5050244403654,40.877329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111.46009665613,79.7189041880179,103.700459958205,68.4704584089002,58.4939522833852,42.2624246717254,81.3948701129565,132.084361361346,81.8021153388874,45.4012762853469,77.8768169565286,65.3237301049806,93.3115890049459,170.099513833857,166.265859173683,66.838025288756,175.499888574566,76.2099059493573,112.239557813689,128.397451772326,37.9878544221806,77.5930615594341,250.464902123981,99.2707727873982,96.2805326275567,50.8367492406312,102.509843253949,148.781405141864,89.2353272129476,116.095862160267,218.54616062423,95.0220648858354,112.5485250054,78.5231811425349,70.5682096022374,93.7859300614536,68.9691530441513,107.323343853664,55.6817859382064,57.9902337890485,97.2700326148583,166.365246308557,38.3239630536688,67.2102049660459,81.4529819837224,88.7643792904724,79.3987182985533,103.400042050762,135.907589158809,97.5561679485589,96.8359421660957,276.222278554201,73.4665407588624,107.677825710477,120.999416119419,69.8860479188586,120.532913072615,226.991512497706,115.32346480496,210.132202617248,99.7901664329687,103.364886837534,129.644935134688,122.617398290204,77.6118728041619,95.5006234342463,84.6470968398646,133.595244031575,104.481867294141,62.7809645822887,106.839570299611,69.5286843723961,68.7962430557352,97.7084358894892,177.92332681105,86.5998618992533,109.530711550625,24.8530523066378,77.0844130686497,83.9934907302234,22.1203091780509,100.673201963945,95.1389285873745,87.5993800924141,73.6693467332217,81.5620452016818,65.4535473751715,65.9321867894429,79.4173565764325,68.9014639979006,96.4370786609751,54.3840223237832,124.427321909771,112.501999839805,121.427748264785,104.103061240637,75.6012945613199,117.84980996057,203.754731998284,115.107721032464,94.804665759871,94.1524728916925,111.683935417522,54.5568063779367,136.302466895171,65.9894331884553,109.343816183025,133.373833746862,94.2522272510982,47.0698107685253,108.551425266731,78.6386233277642,104.038743317851,67.3148348543329,41.2886999907359,101.746052961865,51.1235471772562,67.891933943872,83.1369582278418,119.117529455854,76.9663668961154,162.32245680662,95.2248312927721,61.0071829793472,67.9398174088185,58.8372124488353,124.021595612883,122.377440599339,130.626154542792,63.8450074184806,71.8814820164358,98.0518578036795,85.9926859772847,117.153867445398,67.7949249295132,136.812957510699,88.848943445368,85.2935927603924,131.649630599448,179.621758253933,142.52354402329,91.0510724154581,149.188939004019,102.877649179734,80.9906302176696,128.33748790698,72.4708090436962,103.782031203203,131.068180479129,121.209466961741,119.961536766552,25.0993966973022,104.107409241534,79.7779204171745,170.649056079282,118.813684068196,102.526543224569,73.8674822479066,73.4101847374403|short_description=p1@MATR3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=9782 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6912 | |||
|TSSclassifier=S | |||
|UniProt=Q68E03,B7ZAV5,D6REM6,D6RBK5,P43243 | |||
|association_with_transcript=0bp_to_ENST00000337359,ENST00000503811,ENST00000507860,ENST00000509918,ENST00000510056,ENST00000511249,ENST00000511978,NM_001194955,NM_001194956_5end | |||
|coexpression_cluster_id=C2804 | |||
|description=CAGE_peak_1_at_MATR3_5end | |||
|id=chr5:138629417..138629446,+ | |||
|ontology_enrichment_celltype=CL:0000542!4.30e-15!53;CL:0000051!4.30e-15!53;CL:0000838!1.05e-14!52;CL:0000738!1.24e-11!140;CL:0000037!1.05e-10!172;CL:0000566!1.05e-10!172;CL:0002031!1.27e-10!124;CL:0002087!1.02e-09!119;CL:0000988!2.35e-09!182;CL:0002032!4.58e-09!165;CL:0000837!4.58e-09!165;CL:0000791!5.04e-08!18;CL:0000789!5.04e-08!18;CL:0002420!5.04e-08!18;CL:0002419!5.04e-08!18;CL:0000790!5.04e-08!18;CL:0000084!7.68e-08!25;CL:0000827!7.68e-08!25;CL:0000945!4.26e-07!24;CL:0000826!4.26e-07!24;CL:0000236!6.91e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000542;4.10e-09;53!CL:0000791;4.97e-08;18!CL:0000789;4.97e-08;18!CL:0002419;4.97e-08;18!CL:0000084;7.51e-08;25!CL:0000945;4.30e-07;24!CL:0000236;7.18e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.30e-15,53;CL:0000051,4.30e-15,53;CL:0000838,1.05e-14,52;CL:0000738,1.31e-11,136;CL:0000037,1.22e-10,168;CL:0002031,1.30e-10,120;CL:0002087,1.06e-09,115;CL:0000988,1.17e-09,177;CL:0002032,5.37e-09,161;CL:0000837,5.37e-09,161;CL:0000791,5.04e-08,18;CL:0000789,5.04e-08,18;CL:0002420,5.04e-08,18;CL:0002419,5.04e-08,18;CL:0000790,5.04e-08,18;CL:0000084,7.68e-08,25;CL:0000827,7.68e-08,25;CL:0000945,4.26e-07,24;CL:0000826,4.26e-07,24;CL:0000236,6.91e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;4.10e-09;53!CL:0000790;4.97e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.16e-11!115;UBERON:0001017!5.69e-10!82;UBERON:0000073!1.69e-09!94;UBERON:0001016!1.69e-09!94;UBERON:0005743!2.54e-09!86;UBERON:0001049!1.29e-07!57;UBERON:0005068!1.29e-07!57;UBERON:0006241!1.29e-07!57;UBERON:0007135!1.29e-07!57;UBERON:0003080!1.31e-07!42;UBERON:0002780!2.60e-07!41;UBERON:0001890!2.60e-07!41;UBERON:0006240!2.60e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.14e-11,114;UBERON:0001016,7.78e-10,89;UBERON:0001017,1.08e-09,81;UBERON:0001049,2.43e-07,56;UBERON:0005068,2.43e-07,56;UBERON:0006241,2.43e-07,56;UBERON:0007135,2.43e-07,56;UBERON:0002780,2.60e-07,41;UBERON:0001890,2.60e-07,41;UBERON:0003080,2.60e-07,41;UBERON:0006240,2.60e-07,41;UBERON:0000073,8.16e-07,53;UBERON:0002616,8.16e-07,53 | |||
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| |||
|short_description=p1@MATR3 | |||
}} |
Revision as of 13:27, 13 September 2013
Short description: | p1@MATR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MATR3_5end |
Coexpression cluster: | C2804_parietal_Mast_Neurons_occipital_Neural_Fibroblast_pineal |
Association with transcript: | 0bp_to_ENST00000337359, ENST00000503811, ENST00000507860, ENST00000509918, ENST00000510056, ENST00000511249, ENST00000511978, NM_001194955, NM_001194956_5end |
EntrezGene: | MATR3 |
HGNC: | 6912 |
UniProt: | Q68E03B7ZAV5D6REM6D6RBK5P43243 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.30e-15 | 53 |
common lymphoid progenitor | 4.30e-15 | 53 |
lymphoid lineage restricted progenitor cell | 1.05e-14 | 52 |
leukocyte | 1.31e-11 | 136 |
hematopoietic stem cell | 1.22e-10 | 168 |
hematopoietic lineage restricted progenitor cell | 1.30e-10 | 120 |
nongranular leukocyte | 1.06e-09 | 115 |
hematopoietic cell | 1.17e-09 | 177 |
hematopoietic oligopotent progenitor cell | 5.37e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.37e-09 | 161 |
mature alpha-beta T cell | 5.04e-08 | 18 |
alpha-beta T cell | 5.04e-08 | 18 |
immature T cell | 5.04e-08 | 18 |
mature T cell | 5.04e-08 | 18 |
immature alpha-beta T cell | 5.04e-08 | 18 |
T cell | 7.68e-08 | 25 |
pro-T cell | 7.68e-08 | 25 |
lymphocyte of B lineage | 4.26e-07 | 24 |
pro-B cell | 4.26e-07 | 24 |
B cell | 6.91e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.14e-11 | 114 |
nervous system | 7.78e-10 | 89 |
central nervous system | 1.08e-09 | 81 |
neural tube | 2.43e-07 | 56 |
neural rod | 2.43e-07 | 56 |
future spinal cord | 2.43e-07 | 56 |
neural keel | 2.43e-07 | 56 |
regional part of forebrain | 2.60e-07 | 41 |
forebrain | 2.60e-07 | 41 |
anterior neural tube | 2.60e-07 | 41 |
future forebrain | 2.60e-07 | 41 |
regional part of nervous system | 8.16e-07 | 53 |
regional part of brain | 8.16e-07 | 53 |
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