FFCP PHASE1:Hg19::chr12:10870927..10870966,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8531 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2428 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=62bp_to_ENST00000539204_5end | |||
|coexpression_cluster_id=C9 | |||
|description=CAGE_peak_5_at_CSDA_5end | |||
|id=chr12:10870927..10870966,- | |||
|ontology_enrichment_celltype=CL:0000055!3.05e-20!180;CL:0000680!9.25e-11!57;CL:0000056!9.25e-11!57;CL:0000355!9.25e-11!57;CL:0000183!2.64e-10!59;CL:0000187!1.13e-09!54;CL:0000057!1.92e-09!75;CL:0000222!1.49e-08!119;CL:0000220!1.52e-08!246;CL:0002321!2.17e-08!248;CL:0000144!3.02e-08!625;CL:0000393!3.23e-08!60;CL:0000211!3.23e-08!60;CL:0000192!1.04e-07!42;CL:0000514!1.04e-07!42;CL:0002371!1.27e-07!591 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.91e-07,58;CL:0000056,1.91e-07,58;CL:0000355,1.91e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!5.65e-13!82;UBERON:0001134!6.44e-13!61;UBERON:0002036!6.44e-13!61;UBERON:0003082!6.44e-13!61;UBERON:0000914!8.86e-13!83;UBERON:0002329!8.86e-13!83;UBERON:0003077!8.86e-13!83;UBERON:0003059!8.86e-13!83;UBERON:0007282!8.86e-13!83;UBERON:0009618!8.86e-13!83;UBERON:0007285!8.86e-13!83;UBERON:0002385!1.50e-12!63;UBERON:0001015!1.50e-12!63;UBERON:0000383!1.50e-12!63;UBERON:0004290!3.52e-12!70;UBERON:0002100!8.21e-08!216;UBERON:0002049!1.53e-07!79;UBERON:0007798!1.53e-07!79;UBERON:0005256!2.59e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;5.60e-11;31!UBERON:0001015;5.60e-11;31!UBERON:0000383;5.60e-11;31!UBERON:0001134;7.80e-08;16!UBERON:0002036;7.80e-08;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.35e-10,62;UBERON:0002036,2.35e-10,62;UBERON:0003082,2.35e-10,62;UBERON:0007524,3.23e-10,73;UBERON:0002385,8.54e-10,64;UBERON:0001015,8.54e-10,64;UBERON:0000383,8.54e-10,64;UBERON:0002329,9.02e-10,71;UBERON:0003059,9.02e-10,71;UBERON:0007282,9.02e-10,71;UBERON:0004290,9.02e-10,71;UBERON:0009618,9.02e-10,71;UBERON:0003077,1.59e-09,72;UBERON:0007285,1.59e-09,72;UBERON:0007503,3.41e-08,78;UBERON:0000486,5.60e-08,83 | |||
|phase1_expression=1.81678379270557,1.2846031433459,2.39622486963151,0,2.68176656656373,0,2.53299878168311,1.26343974685366,0.261185628199839,0,0,0,0.791300934685361,1.11389717664042,1.65698687863958,1.34465029290355,0.602694528023977,1.46062018077475,0.487932798790507,0.246242116153576,0.204000691244253,0.313454721478088,0.286235987131057,0.136874425072884,0,0,0.0821005894499457,0,0,0,0.154816123316076,0,0.30120591877825,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.289648807765598,2.43806866313962,0,0.639312809217652,0.722878304769133,1.50401373190767,1.30361867064741,0,1.45990461090791,0,0.221729397462564,0.087834785693126,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0,0,0.419499436209906,1.10047216776027,0,0.775250277507987,1.06729878806013,1.67360306382335,0.402829317109147,0.760272105718513,0,0,0.81014194788176,0.714397826272638,0.44905874525234,0.563057402416611,1.53316637465883,0,1.28241220751285,0,0,0.436094052142534,0.993943903390637,0.25326102332916,1.98613771219828,2.29469296599051,1.06400514659507,0.560677600142307,0,0.98667019366864,0.622422070799533,0.538842688278752,0,1.05950199351452,0.576175924479999,1.87457145467037,1.5608003841516,0,0.896692083310806,0.352303495931295,0.161872944368132,0,1.22492502752936,0.368502951935304,1.65321249881225,1.18800285728205,0.494533858557114,0.910161361938026,0.718618141816238,0.336672227908132,0,0.831192346452549,0,0,0.600952235626387,0.567160915800105,0.358779271377724,0.640672166455702,1.48352330811693,0,1.03052529238439,1.03056216018252,2.04728541964749,0.506328996723799,0.487185025805993,1.7670364197088,1.56484827691909,0.969876340912871,0.355009592516614,0.302256294682921,0,0.966304265816484,0.272746120590835,0,0,0.132529768321485,0,1.0366105501537,0.504641701751257,0,1.56449532329816,0,0,0.928735856063958,1.44375896333917,0.118306800039844,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.768251997860379,0,0.804231779293047,1.11106134190236,0.651616610620649,0,0,0.231860809950154,1.40890433082986,0.433099343283221,0,0.190254152234598,0,0,0,0,0,0,1.00789276919316,0.567100388969546,6.62733068001077,2.3250715081117,1.53353071666084,0,0,0,0,0.12624243342638,0.063497894292169,2.29193055334967,0,0,0.308482478109971,0.300343057843917,1.14330573052231,0.672786506072164,0,0.36669142910475,0.775630294546667,0,0,1.86156681609409,0,0.514414748524284,0,0,0.428933980974443,0,2.46972101034231,0,0.355391948742546,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,1.42636905040718,1.30303176000821,1.43833425785268,0.716243852959582,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0.49076596687656,2.00068208423871,1.08506009479894,0.623912584592421,0.178428988797162,0.630809660135739,0.585707074963566,3.31040709700491,4.5481500811197,6.2083842775503,0.664225598535437,0.553107505625109,1.47702144595741,2.54541504701563,1.02943027143257,0,0,0,0,1.66435439510497,0.907170879989041,4.46594054073798,0.61384789315225,2.24528075546459,1.66580894032411,1.02341449813341,0.321707842287215,2.96836132889982,0,0.710246901252508,1.06765302817952,1.03850885836724,0.348631135379878,0,0.40101294060657,0.920809889358963,0.229628896329213,0.364182336013434,1.83574180943194,1.35359883872224,0.539107359730903,0,0,1.16106791782163,0,0.340187410553031,0,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0.512900250232778,0.984043937099117,0.976135183992909,0,0,0,0,0,1.6068392984416,2.61010939388729,0,0.15350367472613,0.137836572484531,1.28904293841928,0.580066775656914,0.596586391912706,3.91740956845644,0.495854746082934,0.384380134730212,1.78657797492418,0.910420027699949,3.71876439437829,1.25924938732256,1.3940745403212,0.924100740528266,1.06461206063404,0,0.74129687641568,0.286249773483982,1.86079184679834,0.632758849437452,0.762520775695299,0,2.99557291623744,1.59101623962968,0,1.61885211824983,0.823611089208164,1.29593642580255,0.202182481573316,0,1.26377536871694,0.48763373908959,0.487426979262569,1.05650146756755,1.09199929126389,0.848432591722276,0,1.10273068709225,0,0.438450885253763,1.73632660280006,1.9676842561399,0.405820753925408,0.6196469961995,0,0.430234056612155,0.196498082026242,0.35667105148125,0.354761064070598,0.844430541190656,0,0.75894634753143,0,0.865999014529609,1.34060455107157,0,0,0.43050537267123,1.68471475667626,0.443430153536676,0.918893600827838,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66270448179735,0,0,0,2.14870036263921,1.78178808499583,5.52889263778618,0,0.140669416410513,0.333926115068718,0,0,0.19924798825107,0,0,0.613612095012929,0,1.55519793830904,0.179736702294654,0,0,0.493217028184668,0,3.33410970433911,0,0,0,0,0,0,0.1137934482855,0,0.709163045303809,0,0,0,0,0,0,0,0,0.438770794307945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| |||
|short_description=p5@CSDA | |||
}} |
Revision as of 12:08, 11 January 2014
Short description: | p5@CSDA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CSDA_5end |
Coexpression cluster: | C9_skeletal_diaphragm_tongue_throat_penis_heart_left |
Association with transcript: | 62bp_to_ENST00000539204_5end |
EntrezGene: | CSDA |
HGNC: | 2428 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.91e-07 | 58 |
myoblast | 1.91e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.91e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.35e-10 | 62 |
striated muscle tissue | 2.35e-10 | 62 |
myotome | 2.35e-10 | 62 |
dense mesenchyme tissue | 3.23e-10 | 73 |
muscle tissue | 8.54e-10 | 64 |
musculature | 8.54e-10 | 64 |
musculature of body | 8.54e-10 | 64 |
somite | 9.02e-10 | 71 |
presomitic mesoderm | 9.02e-10 | 71 |
presumptive segmental plate | 9.02e-10 | 71 |
dermomyotome | 9.02e-10 | 71 |
trunk paraxial mesoderm | 9.02e-10 | 71 |
paraxial mesoderm | 1.59e-09 | 72 |
presumptive paraxial mesoderm | 1.59e-09 | 72 |
epithelial vesicle | 3.41e-08 | 78 |
multilaminar epithelium | 5.60e-08 | 83 |