FFCP PHASE1:Hg19::chr12:6898648..6898669,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=920 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1678 | |||
|TSSclassifier=strong | |||
|UniProt=P01730,Q6LCP8,B0AZV7 | |||
|association_with_transcript=0bp_to_uc001qqv.1,uc009zez.1,uc009zfa.1,uc009zfb.1,uc009zfc.1,uc010sfj.1,uc010sfk.1,uc010sfl.1_5end | |||
|description=CAGE_peak_3_at_CD4_5end | |||
|id=chr12:6898648..6898669,+ | |||
|ontology_enrichment_celltype=CL:0000763!3.13e-31!112;CL:0000049!3.13e-31!112;CL:0000557!4.72e-28!71;CL:0000988!3.59e-26!182;CL:0000839!8.09e-26!70;CL:0000766!1.66e-25!76;CL:0002009!7.66e-25!65;CL:0000037!1.55e-24!172;CL:0000566!1.55e-24!172;CL:0002194!2.16e-23!63;CL:0000576!2.16e-23!63;CL:0000040!2.16e-23!63;CL:0000559!2.16e-23!63;CL:0002032!3.59e-23!165;CL:0000837!3.59e-23!165;CL:0000738!3.47e-21!140;CL:0002031!7.66e-18!124;CL:0002087!4.22e-15!119;CL:0002057!1.55e-14!42;CL:0000860!1.30e-12!45;CL:0000451!1.62e-10!10;CL:0000990!6.71e-09!8;CL:0002320!1.50e-07!365;CL:0000134!4.00e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000451;4.14e-20;10!CL:0000990;1.01e-16;8!CL:0000235;2.20e-12;6!CL:0000840;1.05e-11;5!CL:0000097;2.29e-10;5!CL:0000453;7.73e-10;5!CL:0000766;3.66e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.64e-29,108;CL:0000049,1.64e-29,108;CL:0000988,3.27e-28,177;CL:0000037,3.32e-26,168;CL:0002032,1.27e-24,161;CL:0000837,1.27e-24,161;CL:0000557,1.54e-24,67;CL:0000738,5.64e-24,136;CL:0000766,3.30e-23,72;CL:0000839,1.03e-21,66;CL:0000451,4.45e-20,10;CL:0002009,6.14e-19,61;CL:0002031,4.09e-18,120;CL:0002194,8.70e-17,59;CL:0000576,8.70e-17,59;CL:0000040,8.70e-17,59;CL:0000559,8.70e-17,59;CL:0000990,9.84e-17,8;CL:0002087,1.20e-12,115;CL:0000235,2.22e-12,6;CL:0000840,1.05e-11,5;CL:0001029,1.05e-11,5;CL:0000097,1.86e-10,5;CL:0002028,1.86e-10,5;CL:0000134,4.63e-10,354;CL:0002320,6.08e-10,361;CL:0000453,7.27e-10,5;CL:0000473,5.03e-09,48;CL:0000234,5.03e-09,48;CL:0000219,5.33e-08,386;CL:0000048,9.22e-07,427 | |||
|ontology_enrichment_development_v019=CL:0000049;4.24e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,6.56e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.47e-29!102;UBERON:0003061!1.47e-29!102;UBERON:0002193!5.74e-28!112;UBERON:0002371!6.62e-25!80;UBERON:0002405!1.64e-22!115;UBERON:0001474!2.77e-21!86;UBERON:0004765!9.37e-19!101;UBERON:0001434!9.37e-19!101;UBERON:0007023!2.12e-09!115;UBERON:0003081!2.67e-08!216;UBERON:0002204!1.61e-07!167;UBERON:0002384!3.53e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.02e-28,98;UBERON:0003061,1.02e-28,98;UBERON:0002193,4.19e-26,108;UBERON:0002405,1.26e-21,93;UBERON:0002371,1.35e-21,76;UBERON:0001474,3.37e-19,82;UBERON:0004765,1.62e-16,90;UBERON:0001434,8.47e-14,100;UBERON:0003081,2.54e-10,203;UBERON:0002384,1.13e-09,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0.218441372130172,0,0.123766352960047,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,1.96682138424452,1.15148819429164,1.85779347979291,0,0,0,0,0,0,2.76997704265939,1.80490002723128,0.651032612147555,4.47830948479849,4.21061765824673,2.57575567634187,0.436194716338694,0.377875943688809,0.485168122375632,0.464858073811369,1.23350366406548,0.309706370895104,2.01384674625505,1.0246428261164,0.945928919554341,0.689491361473237,0.645484683583826,0,0.752969358170419,0.545812300115692,0.898893937780338,0.612167784741805,0.962787081228281,1.91801137739712,0.989553900560148,1.39624560335142,0.426224750532694,0.580418477257168,0,0,0.75374599577023,0.521482918420201,1.3031330682307,0.605399502633369,0.736555271975129,0.316462387440884,0.633765858935825,1.4882300997553,0.838634582033504,1.57260083605093,3.15371474967163,1.92870704036496,1.42506371870624,0.19891667719909,1.0959849225878,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31692042387539,0.196709770113833,2.35806457649499,1.43921049299656,1.00311897234407,0.977766799900771,1.89379122293893,1.94826728407911,2.89667187901451,1.76763544484902,1.99380505125259,2.16643091012012,1.79327847615945,1.69077151827842,0.822189523018381,0.552700035571697,0.869409257205157,0.593146252648242,0.267540828089713,0,1.13309342697566,1.53288197440768,0.68725489096526,1.77113784413652,0,0,0,0.602300476311091,0.255973222308837,0,0,0.821127996921047,0,0,0,0,0,0,0.722878304769133,0,0,0.795285947051099,0.486634870302636,0.189069634328136,0,0,1.11332214173056,0,0,5.19275829847493,6.26867054277362,7.17972986801872,3.57735936458013,4.0039643754609,4.08603251462521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0.709336764396714,0,0,0,0.622422070799533,0,0,0.454072282934794,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0.247266929278557,0.910161361938026,2.87447256726495,0,0,0,0,0.612975591598039,0.600952235626387,0,0,0,0,0,0,0.515281080091258,0.18611685633159,0,0,0.252433774244115,0,0,0,0,0.169560592310488,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,1.56449532329816,0,2.76269842704961,0,0.721879481669586,0.354920400119532,0,0.482022059766964,0.110293972732394,0.435758888184812,0.237270619111097,0.404493924480493,0,0,0,0,1.2347220339942,1.47008711385542,0,0,0,0,0,0,0,0,0,0.185176890317059,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,7.87894419479671,10.5301919312657,7.28292695214768,0,0,0,0,0,0,2.95597942737566,9.06898870336228,8.08579650609011,6.77363781059719,10.8568492746687,0.380987365753014,0.381988425558278,2.34434894420094,0,0.308482478109971,0.300343057843917,0.285826432630578,1.45770409648969,2.1798003441664,0.51336800074665,0,0,0,1.59562869950922,1.04007436911366,0,0,0,1.57275793023962,0,0,0,1.77695974371273,0,0.301439377059586,0,0,7.29742683847143,6.52934218861764,8.43335757932127,0,0,0,0,0,0,0,0.394061520403854,0.431255149719035,0.256686072559497,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0.391602314925481,1.02943027143257,1.24060815673732,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0.831076008928724,0,0,0,0,0,0,1.95777922130672,0,0,0.574265537996172,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48863347743867,0.316379424718726,0.571890581771475,1.27948895655667,0.855877976067841,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,2.43492452355245,0.30982349809975,0,0.286822704408103,0.0982490410131212,1.78335525740625,0,0.211107635297664,0.329294892959902,0,0,0,0,0,1.31801321087491,0.43050537267123,0,1.33029046061003,0.918893600827838,0,0,1.13929437434833,0.952927101831156,1.23408681925858,0,1.08006287447623,0,0,0,0.245040215981032,0,0,1.28055318027145,0,0,1.7235483311913,1.2700414963433,0.324621940274555,0.561594356226918,0.456469358066384,1.25343916618419,0,0.846458889008016,0.1605880751037,1.81619736471943,1.27753871307098,2.74804275804612,0.307240764308458,2.23676107892416,2.0021897005429,0.586164286206121,0.278406173895242,2.46174797895425,1.35227839237992,0,0,0,2.05111450980652,0,2.89752799121444,0,0,0,0,0,0.562677665642051,0,0,0,0.796991953004279,0.828851746593443,0,0,5.90807066213134,0,0,0,3.5810065915881,0,2.3948309234694,0,0.969332746095218,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.60298219312704,0,0.221158519862449,0,0.219385397153973,0.10893846351899,0,1.00035336054936,0,0,0,0,1.27600463892768,0.183195186803725,0,1.02193298195737,0.627921025580099,1.66211681900156,0,0,0,0,0.953619473882272,0,0,0,0,0,0.442287822516696,0.611030144933625,1.48260564340311,2.22415090103705,2.50612678813093,0.539209063845416,0,0.234264445725339,0,0,0,0,1.20990716048664,0.30607276163049,1.45329133145522,0,0,0,0,0,0,0.284609546029793,0.138674673013139,1.38847790668105,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.696418755514666,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0.95833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| |||
|short_description=p3@CD4 | |||
}} |
Revision as of 11:46, 11 January 2014
Short description: | p3@CD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001qqv.1, uc009zez.1, uc009zfa.1, uc009zfb.1, uc009zfc.1, uc010sfj.1, uc010sfk.1, uc010sfl.1_5end |
EntrezGene: | CD4 |
HGNC: | 1678 |
UniProt: | P01730Q6LCP8B0AZV7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.02e-28 | 98 |
blood island | 1.02e-28 | 98 |
hemolymphoid system | 4.19e-26 | 108 |
immune system | 1.26e-21 | 93 |
bone marrow | 1.35e-21 | 76 |
bone element | 3.37e-19 | 82 |
skeletal element | 1.62e-16 | 90 |
skeletal system | 8.47e-14 | 100 |
lateral plate mesoderm | 2.54e-10 | 203 |
connective tissue | 1.13e-09 | 371 |
Ontology term | p-value | n |
---|---|---|
leukemia | 6.56e-07 | 39 |