FFCP PHASE1:Hg19::chr13:23708490..23708505,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=19121 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=177bp_to_ENST00000418454_5end | |||
|description=CAGE_peak_1_at_HMGA1P6_5end | |||
|id=chr13:23708490..23708505,+ | |||
|ontology_enrichment_celltype=CL:0000548!4.59e-21!679;CL:0000004!4.59e-21!679;CL:0000255!4.59e-21!679;CL:0000012!9.50e-21!682;CL:0000003!1.10e-13!722;CL:0000144!3.07e-13!625;CL:0002321!8.10e-13!248;CL:0000066!1.85e-12!254;CL:0000220!2.36e-12!246;CL:0002371!8.06e-10!591;CL:0000222!1.54e-08!119;CL:0000063!8.65e-08!578 | |||
|ontology_enrichment_celltype_v019=CL:0002551;1.05e-08;6!CL:1000449;8.38e-08;15!CL:0000071;1.67e-07;18!CL:0002543;5.73e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002551,1.03e-08,6;CL:1000449,3.54e-08,15;CL:0000071,7.85e-08,18;CL:0002546,7.85e-08,18;CL:0000115,2.20e-07,36;CL:0002543,3.89e-07,6;CL:0002078,4.91e-07,45;CL:1000497,5.49e-07,17;CL:0002518,5.49e-07,17 | |||
|ontology_enrichment_development_v019=CL:0002546;1.67e-07;18 | |||
|ontology_enrichment_disease=DOID:14566!1.75e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!2.73e-08!138;UBERON:0005256!4.84e-08!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;8.38e-08;15!UBERON:0004819;8.38e-08;15!UBERON:0001285;8.38e-08;15!UBERON:0007684;8.38e-08;15!UBERON:0002067;1.60e-07;9!UBERON:0004638;1.67e-07;18!UBERON:0001986;1.67e-07;18!UBERON:0004852;1.67e-07;18!UBERON:0000487;5.28e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,3.54e-08,15;UBERON:0009773,3.54e-08,15;UBERON:0001231,3.54e-08,15;UBERON:0001285,3.54e-08,15;UBERON:0007684,3.54e-08,15;UBERON:0004208,3.54e-08,15;UBERON:0004638,7.85e-08,18;UBERON:0001986,7.85e-08,18;UBERON:0004852,7.85e-08,18;UBERON:0002067,1.45e-07,9;UBERON:0004016,1.45e-07,9;UBERON:0010083,1.45e-07,9;UBERON:0006555,1.52e-07,16;UBERON:0004819,1.52e-07,16;UBERON:0003914,1.72e-07,117;UBERON:0000487,2.04e-07,22;UBERON:0007503,2.13e-07,78;UBERON:0000490,2.56e-07,148 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0.631719873426831,0.522371256399677,0.982935746006035,5.58240934377942,0.655324116390517,0.527533956456907,0.866364470720326,0,0.672325146451775,0.602694528023977,0,0.975865597581014,0.492484232307152,1.22400414746552,0,0.286235987131057,2.32686522623903,0.502170558379211,1.91033514369878,1.31360943119913,1.81034797021462,0,0,0,0,1.8072355126695,1.47901604066715,0.387336002901508,0.142169232487422,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0.485168122375632,0.929716147622738,2.05583944010913,0,0.575384784644301,0.256160706529101,0,0.344745680736619,0,0,1.12945403725563,0.545812300115692,0,0.306083892370903,0.641858054152187,0.639337125799041,0.329851300186716,0.199463657621632,0,0.580418477257168,0,0,0.502497330513487,0,0.217188844705117,0.605399502633369,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0.294605907474837,0,0,0,0.130059347559878,0.164437904603676,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0.795285947051099,0,1.13441780596881,0.443458794925128,0.87834785693126,0,0,0.741568885568859,0,0,0.132957960518865,0,0,0,0.198762407366705,0.860234595106124,0.347140501607594,1.13061588384802,1.67799774483962,5.22724279686128,1.8809546988313,0.516833518338658,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0.735326160691737,1.62028389576352,1.25019619597712,3.14341121676638,1.68917220724983,1.53316637465883,0,1.28241220751285,0,0,0,0,0.25326102332916,0,0.286836620748814,1.41867352879343,0,0,0,0,1.0776853765575,0.653847612453835,0,0,0.234321431833797,4.05808099879417,0.570471821544449,3.28787097213962,4.11020745253177,3.56120477609889,3.23036855415172,1.02077085627447,8.35273357720022,2.27316718586684,0,0.247266929278557,0.910161361938026,3.59309070908119,0.505008341862199,9.38388899039731,0.554128230968366,0.438977620880838,0.30648779579902,0.300476117813194,0.226864366320042,0,0,0,0,0.206105058476878,0,0,0,0.0974370051611986,0,0.368199594569197,0.484938170456436,0,0.302256294682921,0.339121184620975,0,0,0.573609190778008,1.21973706129595,0.530119073285941,1.39432731443422,1.0366105501537,3.02785021050754,1.09493207722749,0,0.643240938192885,1.38134921352481,0.464367928031979,0,0.709840800239063,0.674338760312407,0.241011029883482,0.330881918197182,0.653638332277218,0,0.404493924480493,0.588664395376038,0,0.738155454624648,2.80483547606892,0,0,1.26755034821831,0,0,0,0.245976877086227,0.171567810298526,0.219500570817251,1.1240175325762,0.502644862058154,0.833296006426766,0.325808305310325,1.03993478527958,0,0.811512834825538,0.117408694235822,0.577465791044295,0,0.380508304469197,0.790204397959275,0,0,0,0.594524649154913,0,0,0.141775097242386,0,0.290633938513962,0,0.492663237895943,0,0,0.144119953416961,0,0.063497894292169,0.381988425558278,0,0,0.616964956219941,0,0,0.336393253036082,0.43596006883328,0.8800594298514,0.129271715757778,3.57656445851882,1.690605505112,0,0,1.02882949704857,0,1.5985330740966,0,0,0,0,0,0,0.602878754119172,0,0.799783929456456,1.2162378064119,0,0,0,0,1.42636905040718,0.144781306667579,2.05476322550383,0,0,0,0.215627574859517,0,0.254094624222463,0,0,0.167516265334349,1.91381625495949,0,0,0,1.10422342547226,1.00034104211935,0.813795071099207,0,0.892144943985809,0,0.234282829985426,0.300946099727719,0,0,0.664225598535437,0.553107505625109,0.955719759148911,0.195801157462741,0.686286847621712,0,0.431428401637234,0.213455115606889,0.303127571446259,0,1.5119514666484,0,0,0,0,0,0,0,2.00472601943452,1.24293207719189,0.328508624055237,4.67328986265259,2.09178681227927,0.362578348774867,0.601519410909855,0.644566922551274,0.34444334449382,2.36718518408732,0.917870904715969,0.451199612907412,0.616122696835318,1.56869953835371,2.92278449306521,0.949964660035881,0,1.53084334748864,1.51141141271498,0,1.08378575017541,2.50844886927427,0.764628819135115,1.66215201785745,1.79099803777743,0.219259876645935,0.261435451024901,1.02580050046556,0.656029291399411,0,0,0.0915694648183434,0,0,0.650060246036521,0,0.386682873168488,1.23238893691716,0.767518373630648,2.48105830472155,0.859361958946189,0.725083469571143,2.81247870473133,0,0,0.192190067365106,0,0.10115778085555,0.464845549297286,0,0,1.84820148105653,0,2.60979897622522,0.18532421910392,0,0.372158369359667,0,0.190630193923825,0.767693373934002,0,0.318203247925937,0,0.179872457583315,0.54907405947211,1.29593642580255,0,0,0,0.48763373908959,1.46228093778771,1.05650146756755,0.272999822815972,0.848432591722276,1.13008116620243,1.10273068709225,1.32687795048244,0.876901770507525,0,0.655894752046633,0.405820753925408,0.92947049429925,0.845086807596724,0.573645408816206,0.0982490410131212,0,1.77380532035299,0.211107635297664,0.658589785919804,1.13841952129715,0.349934720244983,0,0,0,0.0941438007767792,0,0,1.7737206141467,0.229723400206959,0,0,0,0,0,0,0,0,0.213648142254946,0,0.245040215981032,0,0.144269212976445,0.497992903438899,0.159426272728822,0.7983174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| |||
|short_description=p1@HMGA1P6 | |||
}} |
Revision as of 16:57, 11 January 2014
Short description: | p1@HMGA1P6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_HMGA1P6_5end |
Coexpression cluster: | NA |
Association with transcript: | 177bp_to_ENST00000418454_5end |
EntrezGene: | NA |
HGNC: | 19121 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of dermis | 1.03e-08 | 6 |
epithelial cell of nephron | 3.54e-08 | 15 |
blood vessel endothelial cell | 7.85e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.85e-08 | 18 |
endothelial cell | 2.20e-07 | 36 |
vein endothelial cell | 3.89e-07 | 6 |
meso-epithelial cell | 4.91e-07 | 45 |
kidney cell | 5.49e-07 | 17 |
kidney epithelial cell | 5.49e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 3.54e-08 | 15 |
renal tubule | 3.54e-08 | 15 |
nephron tubule | 3.54e-08 | 15 |
nephron | 3.54e-08 | 15 |
uriniferous tubule | 3.54e-08 | 15 |
nephrogenic mesenchyme | 3.54e-08 | 15 |
blood vessel endothelium | 7.85e-08 | 18 |
endothelium | 7.85e-08 | 18 |
cardiovascular system endothelium | 7.85e-08 | 18 |
dermis | 1.45e-07 | 9 |
dermatome | 1.45e-07 | 9 |
future dermis | 1.45e-07 | 9 |
excretory tube | 1.52e-07 | 16 |
kidney epithelium | 1.52e-07 | 16 |
epithelial tube | 1.72e-07 | 117 |
simple squamous epithelium | 2.04e-07 | 22 |
epithelial vesicle | 2.13e-07 | 78 |
unilaminar epithelium | 2.56e-07 | 148 |