FFCP PHASE1:Hg19::chr18:43307294..43307345,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1169 | |||
|description=CAGE_peak_at_chr18:43307294..43307345,+ | |||
|id=chr18:43307294..43307345,+ | |||
|ontology_enrichment_celltype=CL:0002540!4.65e-16!6;CL:0000244!2.86e-12!4;CL:0000731!2.86e-12!4;CL:0002092!2.66e-09!10;CL:0002564!3.90e-09!3;CL:0002552!4.79e-09!5;CL:0002556!4.78e-07!6;CL:0002602!8.53e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000244;5.26e-22;4!CL:0000731;5.26e-22;4!CL:0002540;5.77e-21;6!CL:0002552;3.00e-16;5!CL:0002564;5.98e-16;3!CL:0002092;1.70e-12;10!CL:0002602;1.53e-11;2!CL:0002231;6.13e-08;3!CL:0002603;1.53e-07;3!CL:0002379;7.90e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,5.27e-22,4;CL:0000731,5.27e-22,4;CL:0002540,7.42e-21,6;CL:0002552,3.38e-16,5;CL:0002564,5.14e-16,3;CL:0002092,1.96e-12,10;CL:0002602,1.45e-11,2;CL:0002231,6.14e-08,3;CL:0002603,1.53e-07,3;CL:0002379,7.90e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3620;7.90e-07;1!DOID:3565;7.90e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,7.90e-07,1;DOID:3565,7.90e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000365!8.65e-10!5;UBERON:0002242!3.90e-09!3;UBERON:0003068!3.90e-09!3;UBERON:0002328!3.90e-09!3;UBERON:0004880!3.90e-09!3;UBERON:0000075!4.26e-09!13;UBERON:0005944!4.26e-09!13;UBERON:0004288!4.26e-09!13;UBERON:0003089!4.26e-09!13;UBERON:0005910!3.93e-08!6;UBERON:0001758!4.78e-07!6;UBERON:0003672!4.78e-07!6;UBERON:0009568!8.53e-07!2;UBERON:0002216!8.53e-07!2;UBERON:0002209!8.53e-07!2;UBERON:0002213!8.53e-07!2;UBERON:0004267!8.53e-07!2;UBERON:0006444!8.53e-07!2;UBERON:0001995!8.53e-07!2;UBERON:0004715!8.53e-07!2;UBERON:0001468!8.53e-07!2;UBERON:0001130!8.53e-07!2;UBERON:0001066!8.53e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;1.02e-25;5!UBERON:0002216;1.02e-25;5!UBERON:0011134;1.02e-25;5!UBERON:0002209;1.02e-25;5!UBERON:0002213;1.02e-25;5!UBERON:0007844;1.02e-25;5!UBERON:0011138;1.02e-25;5!UBERON:0001130;1.02e-25;5!UBERON:0001066;1.02e-25;5!UBERON:0001468;1.02e-25;5!UBERON:0004765;8.93e-18;26!UBERON:0000365;1.24e-17;5!UBERON:0004905;5.30e-16;8!UBERON:0000982;5.30e-16;8!UBERON:0004770;5.30e-16;8!UBERON:0002242;5.98e-16;3!UBERON:0005910;1.03e-14;6!UBERON:0000075;1.06e-14;16!UBERON:0001434;5.54e-14;36!UBERON:0006444;1.53e-11;2!UBERON:0001995;1.53e-11;2!UBERON:0004715;1.53e-11;2!UBERON:0002371;2.26e-10;12!UBERON:0001828;3.31e-10;8!UBERON:0002418;5.73e-08;3!UBERON:0004755;5.73e-08;3!UBERON:0000486;2.24e-07;12!UBERON:0001474;7.99e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,8.31e-26,5;UBERON:0002216,8.31e-26,5;UBERON:0011134,8.31e-26,5;UBERON:0002209,8.31e-26,5;UBERON:0002213,8.31e-26,5;UBERON:0005856,8.31e-26,5;UBERON:0005866,8.31e-26,5;UBERON:0005863,8.31e-26,5;UBERON:0007844,8.31e-26,5;UBERON:0011138,8.31e-26,5;UBERON:0001130,8.31e-26,5;UBERON:0001066,8.31e-26,5;UBERON:0001468,8.31e-26,5;UBERON:0000365,1.24e-17,5;UBERON:0004905,4.68e-16,8;UBERON:0000982,4.68e-16,8;UBERON:0004770,4.68e-16,8;UBERON:0002242,5.14e-16,3;UBERON:0003068,5.14e-16,3;UBERON:0002328,5.14e-16,3;UBERON:0004880,5.14e-16,3;UBERON:0000075,9.65e-15,16;UBERON:0005910,1.03e-14,6;UBERON:0006444,1.45e-11,2;UBERON:0001995,1.45e-11,2;UBERON:0004715,1.45e-11,2;UBERON:0001828,3.56e-10,8;UBERON:0011137,8.41e-09,14;UBERON:0002418,5.54e-08,3;UBERON:0004755,5.54e-08,3;UBERON:0006554,2.15e-07,47;UBERON:0001008,3.30e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,18.8124856499271,7.29074226601415,0,0,0,0,1.35433163884467,5.71201935483908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50401373190767,1.01392563272577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24569588380383,10.3180826541885,2.58314452939414,1.18800285728205,0,0,0,1.34668891163253,0.375355559615893,0.554128230968366,2.63386572528503,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05765899409714,12.766421882095,2.1313774321288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821905290201534,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71768088406796,18.5063092792081,7.05289061619313,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0,0,1.55776328755086,0,0,42.5073717042964,4.41988746892302,0,0,0,0,0,0,0,0,0,0,1.0795795805107,0,0.541892875087706,0,0,0,0,0,0.522870902049801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89827654831236,0,0.511795582622668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0.438450885253763,0.578775534266688,0.655894752046633,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,187.269837111985,13.47771805341,140.12392851759,548.349756294012,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,8.17801995440674,0,0,3.64980600856654,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,23.4341691145944,0,0,0,0,0,0,0,0,0,0,6.08837424270619,0,0,0,0.611989305817931,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.0620964029413835,0,66.2396162199165,0,0,313.374071837965,0,0,0,0,0,1.32582103692562,11.0689876771133,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80682027481408,0,0,2.94789451518174,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.271878931907327,0.0657727735628491,0,0,0.863424021355654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,6.35210769088245,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9307228228694,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:43307294..43307345,+ | |||
}} |
Revision as of 19:12, 20 January 2014
Short description: | p@chr18:43307294..43307345, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:43307294..43307345, + |
Coexpression cluster: | C1169_Urothelial_meningioma_medulloblastoma_Prostate_fibrosarcoma_Anulus_Nucleus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 5.27e-22 | 4 |
urothelial cell | 5.27e-22 | 4 |
mesenchymal stem cell of the bone marrow | 7.42e-21 | 6 |
fibroblast of gingiva | 3.38e-16 | 5 |
nucleus pulposus cell of intervertebral disc | 5.14e-16 | 3 |
bone marrow cell | 1.96e-12 | 10 |
annulus pulposus cell | 1.45e-11 | 2 |
epithelial cell of prostate | 6.14e-08 | 3 |
astrocyte of the cerebellum | 1.53e-07 | 3 |
meningothelial cell | 7.90e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 8.31e-26 | 5 |
symphysis | 8.31e-26 | 5 |
nonsynovial joint | 8.31e-26 | 5 |
fibrous joint | 8.31e-26 | 5 |
cartilaginous joint | 8.31e-26 | 5 |
developing mesenchymal condensation | 8.31e-26 | 5 |
pre-cartilage condensation | 8.31e-26 | 5 |
cartilaginous condensation | 8.31e-26 | 5 |
cartilage element | 8.31e-26 | 5 |
post-cranial axial skeletal system | 8.31e-26 | 5 |
vertebral column | 8.31e-26 | 5 |
intervertebral disk | 8.31e-26 | 5 |
intervertebral joint | 8.31e-26 | 5 |
urothelium | 1.24e-17 | 5 |
articulation | 4.68e-16 | 8 |
skeletal joint | 4.68e-16 | 8 |
articular system | 4.68e-16 | 8 |
nucleus pulposus | 5.14e-16 | 3 |
axial mesoderm | 5.14e-16 | 3 |
notochord | 5.14e-16 | 3 |
chordamesoderm | 5.14e-16 | 3 |
subdivision of skeletal system | 9.65e-15 | 16 |
transitional epithelium | 1.03e-14 | 6 |
annulus fibrosus | 1.45e-11 | 2 |
fibrocartilage | 1.45e-11 | 2 |
annulus fibrosus disci intervertebralis | 1.45e-11 | 2 |
gingiva | 3.56e-10 | 8 |
axial skeletal system | 8.41e-09 | 14 |
cartilage tissue | 5.54e-08 | 3 |
skeletal tissue | 5.54e-08 | 3 |
urinary system structure | 2.15e-07 | 47 |
renal system | 3.30e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 7.90e-07 | 1 |
meningioma | 7.90e-07 | 1 |