FFCP PHASE1:Mm9::chr1:180919481..180919491,-: Difference between revisions
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{{FFCP|EntrezGene=69726|HGNC=|MCL_coexpression_id=1118|UniProt=|association_with_transcript=-5bp_to_ENSMUST00000129393_5end|description=CAGE_peak_4_at_Smyd3_5end|id=chr1:180919481..180919491,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000355,8.84e-30,9|ontology_enrichment_disease=DOID:0060100!5.27e-09!3;DOID:4045!5.27e-09!3|ontology_enrichment_disease_v019_2=DOID:0060100,1.58e-86,3;DOID:4045,1.58e-86,3;DOID:0050686,5.38e-44,6|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0001134,8.84e-30,9;UBERON:0002036,8.84e-30,9;UBERON:0002385,8.84e-30,9;UBERON:0000486,8.84e-30,9;UBERON:0007503,8.84e-30,9;UBERON:0001015,8.84e-30,9;UBERON:0002329,8.84e-30,9;UBERON:0003082,8.84e-30,9;UBERON:0003059,8.84e-30,9;UBERON:0007282,8.84e-30,9;UBERON:0004290,8.84e-30,9;UBERON:0009618,8.84e-30,9;UBERON:0000383,6.24e-27,10;UBERON:0007524,1.34e-24,11;UBERON:0003077,1.34e-24,11;UBERON:0007285,1.34e-24,11;UBERON:0002204,3.42e-09,32;UBERON:0005256,8.07e-07,45|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09265815368454,14.0640362014284,6.28228492768558,0,0,0,0,0,0,0,0,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0.286533439938757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0.274462930807229,0,0,0,0.15279824777681,0,0.711858403995515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,0,0.209446706813455,0,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0.170870880797853,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0.206035057238894,0.320919209591815,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0.182927972872773,0,0,0,0,0.0985044823755635,0,0,0,0.249810577937946,0,0,0,0,0|short_description=p4@Smyd3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:69726 | |||
|HGNC= | |||
|MCL_coexpression_id=1118 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-5bp_to_ENSMUST00000129393_5end | |||
|cluster_id=chr1:180919481..180919491,- | |||
|description=CAGE_peak_4_at_Smyd3_5end | |||
|id=chr1:180919481..180919491,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000355,8.84e-30,9 | |||
|ontology_enrichment_disease=DOID:0060100!5.27e-09!3;DOID:4045!5.27e-09!3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,1.58e-86,3;DOID:4045,1.58e-86,3;DOID:0050686,5.38e-44,6 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,8.84e-30,9;UBERON:0002036,8.84e-30,9;UBERON:0002385,8.84e-30,9;UBERON:0000486,8.84e-30,9;UBERON:0007503,8.84e-30,9;UBERON:0001015,8.84e-30,9;UBERON:0002329,8.84e-30,9;UBERON:0003082,8.84e-30,9;UBERON:0003059,8.84e-30,9;UBERON:0007282,8.84e-30,9;UBERON:0004290,8.84e-30,9;UBERON:0009618,8.84e-30,9;UBERON:0000383,6.24e-27,10;UBERON:0007524,1.34e-24,11;UBERON:0003077,1.34e-24,11;UBERON:0007285,1.34e-24,11;UBERON:0002204,3.42e-09,32;UBERON:0005256,8.07e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09265815368454,14.0640362014284,6.28228492768558,0,0,0,0,0,0,0,0,0,0.194429899074283,0.139986421625363,0,0,0,0,0,0.286533439938757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0.274462930807229,0,0,0,0.15279824777681,0,0.711858403995515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,0,0.209446706813455,0,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0.702213187313235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0.170870880797853,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0.206035057238894,0.320919209591815,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0.182927972872773,0,0,0,0,0.0985044823755635,0,0,0,0.249810577937946,0,0,0,0,0 | |||
|short_description=p4@Smyd3 | |||
}} |
Revision as of 09:38, 5 August 2015
Short description: | p4@Smyd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Smyd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1118 |
Association with transcript: | -5bp_to_ENSMUST00000129393_5end |
EntrezGene: | 69726 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi-potent skeletal muscle stem cell | 8.84e-30 | 9 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 8.84e-30 | 9 |
striated muscle tissue | 8.84e-30 | 9 |
muscle tissue | 8.84e-30 | 9 |
multilaminar epithelium | 8.84e-30 | 9 |
epithelial vesicle | 8.84e-30 | 9 |
musculature | 8.84e-30 | 9 |
somite | 8.84e-30 | 9 |
myotome | 8.84e-30 | 9 |
presomitic mesoderm | 8.84e-30 | 9 |
presumptive segmental plate | 8.84e-30 | 9 |
dermomyotome | 8.84e-30 | 9 |
trunk paraxial mesoderm | 8.84e-30 | 9 |
musculature of body | 6.24e-27 | 10 |
dense mesenchyme tissue | 1.34e-24 | 11 |
paraxial mesoderm | 1.34e-24 | 11 |
presumptive paraxial mesoderm | 1.34e-24 | 11 |
musculoskeletal system | 3.42e-09 | 32 |
trunk mesenchyme | 8.07e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 1.58e-86 | 3 |
muscle cancer | 1.58e-86 | 3 |
organ system cancer | 5.38e-44 | 6 |