FFCP PHASE1:Hg19::chr6:33043729..33043782,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3115 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4940 | |||
|TSSclassifier=not | |||
|UniProt=A2BEU2,E7EQF5,F5H135,P04440 | |||
|association_with_transcript=0bp_to_ENST00000411942,ENST00000422592,ENST00000535465,uc003ocu.1,uc011dqn.1,uc011dqo.1,uc011dqp.1_5end | |||
|coexpression_cluster_id=C187 | |||
|description=CAGE_peak_1_at_HLA-DPB1_5end | |||
|id=chr6:33043729..33043782,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.38e-58!140;CL:0000037!1.17e-53!172;CL:0000566!1.17e-53!172;CL:0002087!2.10e-52!119;CL:0002031!7.20e-51!124;CL:0002032!1.46e-50!165;CL:0000837!1.46e-50!165;CL:0000988!6.23e-50!182;CL:0002009!4.96e-32!65;CL:0000557!1.55e-31!71;CL:0000766!2.59e-31!76;CL:0002194!1.75e-30!63;CL:0000576!1.75e-30!63;CL:0000040!1.75e-30!63;CL:0000559!1.75e-30!63;CL:0000839!2.65e-29!70;CL:0000763!2.87e-29!112;CL:0000049!2.87e-29!112;CL:0002057!3.06e-28!42;CL:0000860!3.29e-25!45;CL:0000542!5.62e-19!53;CL:0000051!5.62e-19!53;CL:0000838!1.38e-18!52;CL:0000945!2.71e-14!24;CL:0000826!2.71e-14!24;CL:0000236!1.08e-10!14;CL:0000451!2.25e-09!10;CL:0000990!3.63e-08!8;CL:0002393!4.85e-07!9;CL:0002397!4.85e-07!9;CL:0000134!5.82e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.05e-22;33!CL:0002057;1.05e-22;33!CL:0000473;1.89e-22;39!CL:0000234;1.89e-22;39!CL:0000576;1.03e-19;48!CL:0002087;1.21e-16;104!CL:0000945;1.08e-15;24!CL:0000766;2.35e-14;69!CL:0000738;7.87e-14;136!CL:0000542;5.52e-13;53!CL:0000236;3.59e-11;13!CL:0000451;3.13e-10;10!CL:0000988;2.11e-09;177!CL:0000990;6.84e-09;8!CL:0000763;7.71e-09;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.40e-65,136;CL:0002087,5.09e-60,115;CL:0000037,6.14e-58,168;CL:0002031,2.45e-56,120;CL:0000988,2.85e-55,177;CL:0002032,2.08e-54,161;CL:0000837,2.08e-54,161;CL:0002009,2.63e-37,61;CL:0002194,1.49e-35,59;CL:0000576,1.49e-35,59;CL:0000040,1.49e-35,59;CL:0000559,1.49e-35,59;CL:0000473,2.36e-35,48;CL:0000234,2.36e-35,48;CL:0000557,2.66e-35,67;CL:0000766,3.18e-34,72;CL:0000839,3.66e-32,66;CL:0000860,3.56e-31,42;CL:0002057,3.56e-31,42;CL:0000763,1.15e-30,108;CL:0000049,1.15e-30,108;CL:0000542,3.07e-21,53;CL:0000051,3.07e-21,53;CL:0000838,8.36e-21,52;CL:0000945,1.09e-15,24;CL:0000826,1.09e-15,24;CL:0000236,1.08e-11,14;CL:0000451,3.14e-10,10;CL:0000990,6.84e-09,8;CL:0000134,1.02e-07,354;CL:0002393,1.21e-07,9;CL:0002397,1.21e-07,9;CL:0002320,8.09e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.46e-22;42!CL:0000051;5.52e-13;53!CL:0000049;3.27e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.95e-40!102;UBERON:0003061!3.95e-40!102;UBERON:0002193!1.06e-34!112;UBERON:0007023!1.78e-32!115;UBERON:0002371!2.02e-29!80;UBERON:0001474!9.71e-25!86;UBERON:0002405!4.51e-22!115;UBERON:0004765!9.95e-20!101;UBERON:0001434!9.95e-20!101;UBERON:0001049!5.37e-11!57;UBERON:0005068!5.37e-11!57;UBERON:0006241!5.37e-11!57;UBERON:0007135!5.37e-11!57;UBERON:0000178!1.39e-08!15;UBERON:0000179!1.39e-08!15;UBERON:0000463!1.39e-08!15;UBERON:0003080!2.21e-08!42;UBERON:0002616!3.30e-08!59;UBERON:0002780!3.59e-08!41;UBERON:0001890!3.59e-08!41;UBERON:0006240!3.59e-08!41;UBERON:0001017!2.33e-07!82;UBERON:0005743!9.91e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.56e-09;114!UBERON:0000178;2.38e-09;15!UBERON:0000179;2.38e-09;15!UBERON:0000463;2.38e-09;15!UBERON:0002390;2.79e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.96e-45,98;UBERON:0003061,4.96e-45,98;UBERON:0002193,1.09e-39,108;UBERON:0007023,3.22e-35,114;UBERON:0002371,4.11e-33,76;UBERON:0002405,3.57e-31,93;UBERON:0001474,2.44e-28,82;UBERON:0004765,4.36e-23,90;UBERON:0001434,3.90e-19,100;UBERON:0003081,4.11e-11,203;UBERON:0001049,1.13e-10,56;UBERON:0005068,1.13e-10,56;UBERON:0006241,1.13e-10,56;UBERON:0007135,1.13e-10,56;UBERON:0000073,9.38e-10,53;UBERON:0002616,9.38e-10,53;UBERON:0000178,2.35e-09,15;UBERON:0000179,2.35e-09,15;UBERON:0000463,2.35e-09,15;UBERON:0002780,9.75e-08,41;UBERON:0001890,9.75e-08,41;UBERON:0003080,9.75e-08,41;UBERON:0006240,9.75e-08,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.5313801258121,0,0,0,5.29420549730188,0,44.1971157284104,5.72471974262113,2.46373965131192,0.376627918784408,346.993275501447,306.481500416648,309.412081344073,505.079731473993,295.932465932951,644.65433748814,0,0,0,239.218715391971,140.463201697572,499.70794774791,453.168244179076,520.011752290077,369.35250195838,509.183788421588,948.360654103572,807.756980100809,920.952444429763,1025.93318711512,744.490483785408,1029.42820445528,1045.18877135148,934.074414619632,1353.88039826804,1161.43264340294,1360.95523300881,1026.65263723365,871.404322838165,1226.96396854474,1153.172572038,1003.20300761264,1065.41403975415,1321.67024725756,1063.87972475725,1154.64284919307,1032.43456958442,1213.53689297001,1098.38118212275,1233.38926417148,960.015800177408,1015.20026586279,989.165995115798,1200.4536782033,1202.79182197694,1116.35668285593,1045.5402085687,1240.21609638083,2146.14245364302,2652.02603776395,2462.86010878689,658.470435780754,889.497736300242,481.694583331149,903.775410403499,997.368219476238,1027.12053661854,4294.30836485627,3893.968298299,4377.27503826255,3309.29287600326,3805.36346079026,3697.38244622719,4462.7139361706,4649.10394585083,1765.1294172084,1912.04428859178,1946.15300438554,374.044859878643,367.693617315888,279.187129861582,14.7532327585375,27.5107533924415,40.9146983009023,4.68122187093899,11.7332015988093,7.101717086021,5.84480185223734,73.6423120010997,115.780121637611,122.508243704742,110.758780279891,33.6880170878526,70.6222257250139,3.12432018746985,11.3303507292198,1.73881851441031,7.1177550317789,11.2367147797679,4.18142095219907,19.4892069439814,32.5737419561633,51.5441168223945,37.1938947268669,120.417726614509,138.029692217561,168.230011867362,230.681082427148,173.677831336546,157.412715455956,168.348626203296,158.477703405762,64.1109443454649,82.6390204971038,42.5783747415429,0,0,0,0,0,0.144846518960824,0,3.40644409211845,0.0945348171640679,0,3.07421749925941,186.776161659738,0,0,1972.27451123951,2179.58192177493,1880.55739357883,1072.96931874973,1071.91846280196,853.60933805534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.495845917967,11.6334079244498,0,0,0,0.132409180813219,0,12.7680617591409,0.560677600142307,0,0,0,0,0,0.151357427644931,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0.30648779579902,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0.504641701751257,0.72995471815166,0,0.643240938192885,0,0,0,0,0,0,0.110293972732394,0,0,0.539325232640658,0.196221465125346,0,0,0,0,0,11.4079531339648,40.2959158837827,114.022451989511,0,0.491953754172454,0,0,0,0,0,0,0,1.44331342025273,0.579652024875384,0,0,0,0,0,0,1113.39330152721,527.445613623842,829.213254408815,0,0.16798212819886,0.141775097242386,0,0,0,0.492663237895943,0.088048434013226,14.0983118567725,10.0883967391873,9.84690980725764,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0.301439377059586,0,0,1219.88651983114,698.639614182088,777.977236692387,0,0,2.85273810081437,0,0,0.179060963239896,34.6343094939999,153.092900676897,70.2945894042026,121.797541429481,2.03275699377971,1.30139853857622,6.18631050222156,0.502548796003046,2.55175500661265,5.24304916763028,23.932916736322,0.828831026872071,0.12269149171914,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0.0868836144680828,0,0,368.460622550985,523.538365386783,563.841687875596,0,0,0,0,0,0,0,0,0,0,0.308419387605311,8.70052454034323,6.57017248110473,0,5.92672930145792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,1.0457418040996,0,0,0,134.880684246868,0,0,0,0,0,1.16004861950546,0.154048617114644,0,0,0,0.145016693914229,10.8237816818448,0,0.165284915360978,0,0,0.30347334256665,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.0377607605685,0,0,0,0,0,6.54433669422759,0.329294892959902,0,0,0,14.0763477862515,1.08890984861323,128.882863263411,0,0,0,0,355.720774071751,315.795166549801,432.362215065189,477.654709792867,684.918184688513,326.83054884113,366.68134588468,446.529474253674,0,0,0,172.425346516667,87.2828738507491,0,0,24.9474214291021,219.27364880156,0.423347165447766,2.921597462471,276.02362608553,29.4422735952818,0,5.01268954180134,9.14175600128658,2.72999727676289,59.9345130357411,157.988954183111,35.037545165088,0.614481528616916,1.11838053946208,0.834245708559542,12.1140619149265,0,1.23087398947712,0,0,4.22961015263549,0,162.184554453987,0,588.421068985086,1.42068073403207,4.53614521001611,11.8785872333055,0.307160702099232,59.6488588659779,78.4935343570661,0,98.5527167876022,0,223.954738794202,430.726624313059,0,0.306806047506464,326.051649666373,0,0.0898683511473268,0,5.11572370226872,86.0170497154061,490.940339311227,1.11136990144637,22.29465316019,57.3306846640241,0,0,0,50.0249707050007,0.341380344856499,0,0,0,0.291604613383254,0,63.7733797785964,50.5299077840459,15.2581736317083,14.9282000907153,32.5102380848902,44.5352356222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| |||
|short_description=p1@HLA-DPB1 | |||
}} |
Revision as of 11:21, 22 January 2014
Short description: | p1@HLA-DPB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-DPB1_5end |
Coexpression cluster: | C187_migratory_immature_Dendritic_CD19_CD14_Monocytederived_Macrophage |
Association with transcript: | 0bp_to_ENST00000411942, ENST00000422592, ENST00000535465, uc003ocu.1, uc011dqn.1, uc011dqo.1, uc011dqp.1_5end |
EntrezGene: | HLA-DPB1 |
HGNC: | 4940 |
UniProt: | A2BEU2E7EQF5F5H135P04440 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.96e-45 | 98 |
blood island | 4.96e-45 | 98 |
hemolymphoid system | 1.09e-39 | 108 |
adult organism | 3.22e-35 | 114 |
bone marrow | 4.11e-33 | 76 |
immune system | 3.57e-31 | 93 |
bone element | 2.44e-28 | 82 |
skeletal element | 4.36e-23 | 90 |
skeletal system | 3.90e-19 | 100 |
lateral plate mesoderm | 4.11e-11 | 203 |
neural tube | 1.13e-10 | 56 |
neural rod | 1.13e-10 | 56 |
future spinal cord | 1.13e-10 | 56 |
neural keel | 1.13e-10 | 56 |
regional part of nervous system | 9.38e-10 | 53 |
regional part of brain | 9.38e-10 | 53 |
blood | 2.35e-09 | 15 |
haemolymphatic fluid | 2.35e-09 | 15 |
organism substance | 2.35e-09 | 15 |
regional part of forebrain | 9.75e-08 | 41 |
forebrain | 9.75e-08 | 41 |
anterior neural tube | 9.75e-08 | 41 |
future forebrain | 9.75e-08 | 41 |