FFCP PHASE1:Mm9::chr1:82816230..82816240,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=129|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:82816230..82816240,+|id=chr1:82816230..82816240,+|ontology_enrichment_celltype=CL:0000791!4.83e-11!9;CL:0000789!4.83e-11!9;CL:0002420!4.83e-11!9;CL:0002419!4.83e-11!9;CL:0000790!4.83e-11!9;CL:0000624!6.09e-09!8;CL:0000084!6.82e-09!11;CL:0000827!6.82e-09!11;CL:0000838!4.36e-08!12;CL:0000542!2.10e-07!13;CL:0000051!2.10e-07!13|ontology_enrichment_celltype_v019_2=CL:0000815,6.79e-16,1;CL:0000792,6.79e-16,1;CL:0000624,3.14e-08,8;CL:0000791,2.03e-07,9;CL:0000789,2.03e-07,9;CL:0002420,2.03e-07,9;CL:0002419,2.03e-07,9;CL:0000790,2.03e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002370!1.23e-20!23;UBERON:0000974!1.23e-20!23;UBERON:0004807!1.23e-20!23;UBERON:0005058!1.23e-20!23;UBERON:0003351!1.23e-20!23;UBERON:0009113!1.23e-20!23;UBERON:0003295!1.23e-20!23;UBERON:0009722!1.23e-20!23;UBERON:0005562!1.23e-20!23;UBERON:0007690!1.23e-20!23;UBERON:0006562!1.21e-19!24;UBERON:0003408!1.21e-19!24;UBERON:0001557!1.21e-19!24;UBERON:0001042!1.21e-19!24;UBERON:0008814!1.21e-19!24;UBERON:0009145!1.21e-19!24;UBERON:0004177!5.88e-18!29;UBERON:0000072!4.20e-17!27;UBERON:0002193!2.85e-14!48;UBERON:0000063!1.83e-12!35;UBERON:0002390!5.77e-12!45;UBERON:0003061!5.77e-12!45;UBERON:0000065!1.09e-11!41;UBERON:0005057!1.86e-11!51;UBERON:0001004!2.48e-11!42;UBERON:0002405!7.97e-11!70;UBERON:0003929!4.28e-09!55;UBERON:0002368!4.81e-08!60;UBERON:0005911!1.76e-07!69;UBERON:0001007!1.82e-07!128;UBERON:0001555!1.82e-07!128;UBERON:0007026!1.82e-07!128;UBERON:0004119!2.87e-07!130;UBERON:0000925!2.87e-07!130;UBERON:0006595!2.87e-07!130;UBERON:0002530!3.70e-07!65;UBERON:0000490!5.35e-07!66;UBERON:0004921!7.71e-07!126;UBERON:0004185!7.71e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.15e-16,23;UBERON:0000974,3.15e-16,23;UBERON:0004807,3.15e-16,23;UBERON:0005058,3.15e-16,23;UBERON:0003351,3.15e-16,23;UBERON:0009113,3.15e-16,23;UBERON:0003295,3.15e-16,23;UBERON:0009722,3.15e-16,23;UBERON:0005562,3.15e-16,23;UBERON:0007690,3.15e-16,23;UBERON:0006562,1.42e-15,24;UBERON:0003408,1.42e-15,24;UBERON:0001557,1.42e-15,24;UBERON:0001042,1.42e-15,24;UBERON:0008814,1.42e-15,24;UBERON:0009145,1.42e-15,24;UBERON:0000072,6.71e-14,27;UBERON:0004177,5.64e-13,29;UBERON:0005057,5.64e-13,29;UBERON:0000077,7.92e-11,35;UBERON:0007811,1.54e-10,36;UBERON:0000065,2.65e-09,41;UBERON:0001004,4.32e-09,42;UBERON:0000153,6.89e-09,43;UBERON:0002390,1.65e-08,45;UBERON:0003061,1.65e-08,45;UBERON:0002193,5.33e-08,48;UBERON:0002405,5.33e-08,48;UBERON:0003929,5.04e-07,55|phase1_expression=0,0,0,0,0,0,0,1.67860320474049,0.985521055061667,1.17032263160997,0,0,0.513602189793617,0,0,0,0,0,0.274228867211478,0,0,0,0,0,0.22940928106717,0,0,0.215471232685889,0,0.504060259519861,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725362142011344,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0.264450566663544,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170870880797853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41907650703115,3.18403967210964,2.85825810551149,1.07416017400489,0.39736270956253,0.240390899039938,0.443068581523732,0.403865799792591,0,0,0.194915761479505,0.288635524920988,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0,0,0,0,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:82816230..82816240,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=129 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:82816230..82816240,+ | |||
|description=CAGE_peak_at_chr1:82816230..82816240,+ | |||
|id=chr1:82816230..82816240,+ | |||
|ontology_enrichment_celltype=CL:0000791!4.83e-11!9;CL:0000789!4.83e-11!9;CL:0002420!4.83e-11!9;CL:0002419!4.83e-11!9;CL:0000790!4.83e-11!9;CL:0000624!6.09e-09!8;CL:0000084!6.82e-09!11;CL:0000827!6.82e-09!11;CL:0000838!4.36e-08!12;CL:0000542!2.10e-07!13;CL:0000051!2.10e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000815,6.79e-16,1;CL:0000792,6.79e-16,1;CL:0000624,3.14e-08,8;CL:0000791,2.03e-07,9;CL:0000789,2.03e-07,9;CL:0002420,2.03e-07,9;CL:0002419,2.03e-07,9;CL:0000790,2.03e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!1.23e-20!23;UBERON:0000974!1.23e-20!23;UBERON:0004807!1.23e-20!23;UBERON:0005058!1.23e-20!23;UBERON:0003351!1.23e-20!23;UBERON:0009113!1.23e-20!23;UBERON:0003295!1.23e-20!23;UBERON:0009722!1.23e-20!23;UBERON:0005562!1.23e-20!23;UBERON:0007690!1.23e-20!23;UBERON:0006562!1.21e-19!24;UBERON:0003408!1.21e-19!24;UBERON:0001557!1.21e-19!24;UBERON:0001042!1.21e-19!24;UBERON:0008814!1.21e-19!24;UBERON:0009145!1.21e-19!24;UBERON:0004177!5.88e-18!29;UBERON:0000072!4.20e-17!27;UBERON:0002193!2.85e-14!48;UBERON:0000063!1.83e-12!35;UBERON:0002390!5.77e-12!45;UBERON:0003061!5.77e-12!45;UBERON:0000065!1.09e-11!41;UBERON:0005057!1.86e-11!51;UBERON:0001004!2.48e-11!42;UBERON:0002405!7.97e-11!70;UBERON:0003929!4.28e-09!55;UBERON:0002368!4.81e-08!60;UBERON:0005911!1.76e-07!69;UBERON:0001007!1.82e-07!128;UBERON:0001555!1.82e-07!128;UBERON:0007026!1.82e-07!128;UBERON:0004119!2.87e-07!130;UBERON:0000925!2.87e-07!130;UBERON:0006595!2.87e-07!130;UBERON:0002530!3.70e-07!65;UBERON:0000490!5.35e-07!66;UBERON:0004921!7.71e-07!126;UBERON:0004185!7.71e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.15e-16,23;UBERON:0000974,3.15e-16,23;UBERON:0004807,3.15e-16,23;UBERON:0005058,3.15e-16,23;UBERON:0003351,3.15e-16,23;UBERON:0009113,3.15e-16,23;UBERON:0003295,3.15e-16,23;UBERON:0009722,3.15e-16,23;UBERON:0005562,3.15e-16,23;UBERON:0007690,3.15e-16,23;UBERON:0006562,1.42e-15,24;UBERON:0003408,1.42e-15,24;UBERON:0001557,1.42e-15,24;UBERON:0001042,1.42e-15,24;UBERON:0008814,1.42e-15,24;UBERON:0009145,1.42e-15,24;UBERON:0000072,6.71e-14,27;UBERON:0004177,5.64e-13,29;UBERON:0005057,5.64e-13,29;UBERON:0000077,7.92e-11,35;UBERON:0007811,1.54e-10,36;UBERON:0000065,2.65e-09,41;UBERON:0001004,4.32e-09,42;UBERON:0000153,6.89e-09,43;UBERON:0002390,1.65e-08,45;UBERON:0003061,1.65e-08,45;UBERON:0002193,5.33e-08,48;UBERON:0002405,5.33e-08,48;UBERON:0003929,5.04e-07,55 | |||
|phase1_expression=0,0,0,0,0,0,0,1.67860320474049,0.985521055061667,1.17032263160997,0,0,0.513602189793617,0,0,0,0,0,0.274228867211478,0,0,0,0,0,0.22940928106717,0,0,0.215471232685889,0,0.504060259519861,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725362142011344,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0.264450566663544,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170870880797853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41907650703115,3.18403967210964,2.85825810551149,1.07416017400489,0.39736270956253,0.240390899039938,0.443068581523732,0.403865799792591,0,0,0.194915761479505,0.288635524920988,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0,0,0,0,0,0,0,0.192909220463705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:82816230..82816240,+ | |||
}} |
Latest revision as of 01:54, 6 August 2015
Short description: | p@chr1:82816230..82816240, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:82816230..82816240, + |
Coexpression cluster: | MCL_coexpression_mm9:129 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regulatory T cell | 6.79e-16 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.79e-16 | 1 |
CD4-positive, alpha-beta T cell | 3.14e-08 | 8 |
mature alpha-beta T cell | 2.03e-07 | 9 |
alpha-beta T cell | 2.03e-07 | 9 |
immature T cell | 2.03e-07 | 9 |
mature T cell | 2.03e-07 | 9 |
immature alpha-beta T cell | 2.03e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.15e-16 | 23 |
neck | 3.15e-16 | 23 |
respiratory system epithelium | 3.15e-16 | 23 |
hemolymphoid system gland | 3.15e-16 | 23 |
pharyngeal epithelium | 3.15e-16 | 23 |
thymic region | 3.15e-16 | 23 |
pharyngeal gland | 3.15e-16 | 23 |
entire pharyngeal arch endoderm | 3.15e-16 | 23 |
thymus primordium | 3.15e-16 | 23 |
early pharyngeal endoderm | 3.15e-16 | 23 |
pharynx | 1.42e-15 | 24 |
gland of gut | 1.42e-15 | 24 |
upper respiratory tract | 1.42e-15 | 24 |
chordate pharynx | 1.42e-15 | 24 |
pharyngeal arch system | 1.42e-15 | 24 |
pharyngeal region of foregut | 1.42e-15 | 24 |
segment of respiratory tract | 6.71e-14 | 27 |
hemopoietic organ | 5.64e-13 | 29 |
immune organ | 5.64e-13 | 29 |
mixed endoderm/mesoderm-derived structure | 7.92e-11 | 35 |
craniocervical region | 1.54e-10 | 36 |
respiratory tract | 2.65e-09 | 41 |
respiratory system | 4.32e-09 | 42 |
anterior region of body | 6.89e-09 | 43 |
hematopoietic system | 1.65e-08 | 45 |
blood island | 1.65e-08 | 45 |
hemolymphoid system | 5.33e-08 | 48 |
immune system | 5.33e-08 | 48 |
gut epithelium | 5.04e-07 | 55 |