FFCP PHASE1:Hg19::chr7:142498934..142498946,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=210bp_to_L34740_5end | |||
|coexpression_cluster_id=C419 | |||
|description=CAGE_peak_3_at_L34740_5end | |||
|id=chr7:142498934..142498946,+ | |||
|ontology_enrichment_celltype=CL:0000084!3.24e-39!25;CL:0000827!3.24e-39!25;CL:0000791!2.14e-36!18;CL:0000789!2.14e-36!18;CL:0002420!2.14e-36!18;CL:0002419!2.14e-36!18;CL:0000790!2.14e-36!18;CL:0000838!5.27e-25!52;CL:0000542!2.17e-24!53;CL:0000051!2.17e-24!53;CL:0000625!2.00e-21!11;CL:0000624!1.05e-14!6;CL:0002087!4.54e-11!119;CL:0000738!4.20e-09!140;CL:0000898!2.09e-08!3;CL:0002031!7.56e-08!124;CL:0000842!9.88e-08!3;CL:0000623!1.65e-07!3;CL:0000825!1.65e-07!3;CL:0000037!3.35e-07!172;CL:0000566!3.35e-07!172;CL:0000988!6.08e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.11e-26;25!CL:0000791;6.89e-25;18!CL:0000789;6.89e-25;18!CL:0002419;6.89e-25;18!CL:0000624;1.10e-15;6!CL:0000625;2.48e-13;11!CL:0000815;1.37e-12;2!CL:0000792;1.37e-12;2!CL:0002677;1.37e-12;2!CL:0000898;1.10e-08;3!CL:0000542;6.23e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.03e-26,25;CL:0000827,1.03e-26,25;CL:0000791,6.27e-25,18;CL:0000789,6.27e-25,18;CL:0002420,6.27e-25,18;CL:0002419,6.27e-25,18;CL:0000790,6.27e-25,18;CL:0000624,1.19e-15,6;CL:0000625,2.16e-13,11;CL:0000815,1.08e-12,2;CL:0000792,1.08e-12,2;CL:0002677,1.08e-12,2;CL:0000838,8.90e-12,52;CL:0000542,1.62e-11,53;CL:0000051,1.62e-11,53;CL:0000898,9.40e-09,3 | |||
|ontology_enrichment_development_v019=CL:0000790;6.89e-25;18!CL:0000051;6.23e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.40e-12!7;UBERON:0000178!2.21e-11!15;UBERON:0000179!2.21e-11!15;UBERON:0000463!2.21e-11!15;UBERON:0002370!1.06e-10!4;UBERON:0005058!1.06e-10!4;UBERON:0009113!1.06e-10!4;UBERON:0003295!1.06e-10!4;UBERON:0005562!1.06e-10!4;UBERON:0003351!4.21e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.22e-13;2!UBERON:0005058;1.22e-13;2!UBERON:0009113;1.22e-13;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.12e-07,4;UBERON:0005058,3.12e-07,4;UBERON:0009113,3.12e-07,4;UBERON:0003295,3.12e-07,4;UBERON:0005562,3.12e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,1.57204305099666,1.02800749499755,2.84217042164153,1.95553359980154,1.4203434172042,5.84480185223734,1.44833593950726,1.17842362989935,2.43687284041983,0.812411591295047,1.79327847615945,1.43065282315866,1.97325485524411,3.59255023121603,3.18783394308558,1.77943875794473,1.07016331235885,2.09071047609954,1.35971211237079,0.766440987203842,1.03088233644789,1.26509846009751,2.22995790026868,1.95325036156926,2.85135613334512,0.903450714466637,0.76791966692651,1.24930726552346,0.947109008176067,0.821127996921047,0.201606743224732,0,1.44824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7658523976586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336255431980582,0.394061520403854,0.431255149719035,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,1.52927441428475,0.569647187174163,0,0.411362273086194,0,1.08006287447623,0,0,0,0,0,0,27.318467845791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.8334533143799,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0,0.611030144933625,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0.0771741581079447,0,0.470317296361523,0,0,0,0,0,0,0.375935671919414,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.714193294391221,13.7574377950693,11.1734485732544,0.112131862580613,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,1.81146414231924,0 | |||
|short_description=p3@L34740 | |||
}} |
Revision as of 19:48, 22 January 2014
Short description: | p3@L34740 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_L34740_5end |
Coexpression cluster: | C419_acute_chronic_thymus_xeroderma_Burkitt_Hodgkin_CD4 |
Association with transcript: | 210bp_to_L34740_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.03e-26 | 25 |
pro-T cell | 1.03e-26 | 25 |
mature alpha-beta T cell | 6.27e-25 | 18 |
alpha-beta T cell | 6.27e-25 | 18 |
immature T cell | 6.27e-25 | 18 |
mature T cell | 6.27e-25 | 18 |
immature alpha-beta T cell | 6.27e-25 | 18 |
CD4-positive, alpha-beta T cell | 1.19e-15 | 6 |
CD8-positive, alpha-beta T cell | 2.16e-13 | 11 |
regulatory T cell | 1.08e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.08e-12 | 2 |
naive regulatory T cell | 1.08e-12 | 2 |
lymphoid lineage restricted progenitor cell | 8.90e-12 | 52 |
lymphocyte | 1.62e-11 | 53 |
common lymphoid progenitor | 1.62e-11 | 53 |
naive T cell | 9.40e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.12e-07 | 4 |
hemolymphoid system gland | 3.12e-07 | 4 |
thymic region | 3.12e-07 | 4 |
pharyngeal gland | 3.12e-07 | 4 |
thymus primordium | 3.12e-07 | 4 |