FFCP PHASE1:Mm9::chr4:135528489..135528533,-: Difference between revisions
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{{FFCP|EntrezGene=26394|HGNC=|MCL_coexpression_id=247|UniProt=B1AV56,Q9WTL7|association_with_transcript=0bp_to_ENSMUST00000145350,ENSMUST00000150978,NM_011942,uc008vhn.1_5end|description=CAGE_peak_1_at_Lypla2_5end|id=chr4:135528489..135528533,-|ontology_enrichment_celltype=CL:0000144!1.32e-20!121;CL:0000012!1.32e-20!121;CL:0002371!5.15e-20!118;CL:0002319!7.18e-19!43;CL:0000221!9.82e-19!44;CL:0000133!9.82e-19!44;CL:0000548!3.31e-18!115;CL:0000004!3.31e-18!115;CL:0000255!3.31e-18!115;CL:0000034!5.11e-17!97;CL:0000723!6.42e-17!91;CL:0000048!6.42e-17!91;CL:0000055!1.29e-15!50;CL:0002321!8.91e-14!70;CL:0000220!8.91e-14!70;CL:0000540!1.29e-13!33;CL:0000047!1.29e-13!33;CL:0000031!1.29e-13!33;CL:0000404!1.29e-13!33;CL:0000117!1.34e-13!23;CL:0000337!1.34e-13!23;CL:0000393!4.39e-11!39;CL:0000211!4.39e-11!39;CL:0000219!1.46e-07!54|ontology_enrichment_celltype_v019_2=CL:0002319,7.18e-19,43;CL:0000221,9.82e-19,44;CL:0000133,9.82e-19,44;CL:0000034,5.11e-17,97;CL:0000723,6.42e-17,91;CL:0000048,6.42e-17,91;CL:0002321,8.91e-14,70;CL:0000540,1.29e-13,33;CL:0000047,1.29e-13,33;CL:0000031,1.29e-13,33;CL:0000404,1.29e-13,33;CL:0000117,1.34e-13,23;CL:0000337,1.34e-13,23;CL:0000393,4.39e-11,39;CL:0000211,4.39e-11,39;CL:0000219,1.46e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.51e-20!75;UBERON:0001016!1.51e-20!75;UBERON:0001017!3.05e-19!73;UBERON:0005743!3.05e-19!73;UBERON:0004121!2.43e-13!102;UBERON:0000924!2.43e-13!102;UBERON:0006601!2.43e-13!102;UBERON:0001049!9.38e-13!52;UBERON:0005068!9.38e-13!52;UBERON:0006241!9.38e-13!52;UBERON:0007135!9.38e-13!52;UBERON:0000955!3.20e-11!50;UBERON:0006238!3.20e-11!50;UBERON:0002616!3.96e-11!49;UBERON:0002020!9.47e-11!34;UBERON:0002780!1.50e-08!39;UBERON:0001890!1.50e-08!39;UBERON:0006240!1.50e-08!39;UBERON:0000033!1.80e-08!63;UBERON:0003080!2.21e-08!40;UBERON:0002791!3.43e-08!29;UBERON:0003528!3.43e-08!29;UBERON:0001893!3.43e-08!29;UBERON:0002346!1.97e-07!71;UBERON:0003075!1.97e-07!71;UBERON:0007284!1.97e-07!71|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.51e-20,75;UBERON:0001017,3.05e-19,73;UBERON:0004121,8.93e-16,95;UBERON:0000924,8.93e-16,95;UBERON:0006601,8.93e-16,95;UBERON:0000073,1.03e-13,54;UBERON:0001049,9.38e-13,52;UBERON:0005068,9.38e-13,52;UBERON:0006241,9.38e-13,52;UBERON:0007135,9.38e-13,52;UBERON:0002020,9.47e-11,34;UBERON:0000955,5.14e-10,47;UBERON:0006238,5.14e-10,47;UBERON:0002616,6.35e-10,46;UBERON:0002346,1.55e-09,64;UBERON:0003075,1.55e-09,64;UBERON:0007284,1.55e-09,64;UBERON:0010371,8.91e-09,73;UBERON:0002780,1.50e-08,39;UBERON:0001890,1.50e-08,39;UBERON:0006240,1.50e-08,39;UBERON:0003080,2.21e-08,40;UBERON:0003528,3.43e-08,29;UBERON:0002791,3.43e-08,29;UBERON:0001893,3.43e-08,29|phase1_expression=17.2960754873177,24.4282785347553,11.8299802241279,10.2837831844322,8.5152274090879,17.9630820945722,12.6150825921584,20.1432384568859,13.7972947708633,8.66038747391376,16.0944890131975,11.0085579413564,16.4352700733957,13.1130603628496,11.3257319017325,9.51633756732182,6.99561878128147,14.8267217718372,13.5743289269681,10.1853516431527,14.9676190665883,13.3049874609186,21.1571829202538,11.6794468639187,15.1410125504332,25.2662064210609,19.8150518233174,22.1935369666466,18.0522248483555,19.6583501212746,21.2861290229093,12.065582795733,23.9875267157982,15.8481681015439,16.4645423258227,17.9533416987172,11.637653306955,49.805264057692,32.0347491254758,34.0290433582969,52.9408339227913,35.5183652178392,54.8626698925204,4.90997590104751,6.9950082541465,8.07605709511399,25.0365230191373,26.5990690784145,25.7032833799332,15.748821825017,19.3181261843,20.125359011096,18.456086666351,14.5072428402269,17.8129713545506,16.7218633423366,14.6132054368766,19.0798674142654,39.6540263284812,33.3264316941381,33.5930643858275,24.3968063089775,20.4537803105562,72.4419272411526,49.4433181283487,68.9165711497717,48.8348180145,74.9225695377031,28.9294018340653,21.1959323180754,20.6118462124354,32.2785612376298,34.8972294703549,23.0282702524114,32.2999237331457,24.8189072384706,16.5173821499083,30.2618991261895,26.5739302533301,31.6527090552465,51.6905186353615,41.152156273984,40.7607178542016,25.8870800614573,25.9757021220577,24.1595440088408,30.8946547334053,29.2647129945722,51.2666328865656,34.3850598485874,8.98579914975201,11.185510400758,17.6792546764015,31.3027851149934,18.8435161059824,12.9927797258227,15.870219474888,10.7371103224176,9.61208217030615,15.1936017039446,13.3801248787846,6.41632387071589,0,0,20.5666488960653,21.0288688344332,12.6381111253696,13.1311461676919,11.3932668804756,10.984718290797,14.2257967948231,7.61163695780353,7.37969591219387,10.2491395575783,9.7598626922635,11.0586600370114,18.0452326446093,9.39895819979426,11.4999371753484,9.38247729694973,11.0420759230197,9.21262980956922,14.9113408974498,12.5895742714965,18.2218634927706,14.8165092020983,14.4976300652164,20.9965955847693,16.5191295194984,12.2828324311955,12.3525162761029,19.7277332817197,16.1656617778817,15.0872119824895,19.73986423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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:26394 | |||
|HGNC= | |||
|MCL_coexpression_id=247 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:B1AV56,uniprot:Q9WTL7 | |||
|association_with_transcript=0bp_to_ENSMUST00000145350,ENSMUST00000150978,NM_011942,uc008vhn.1_5end | |||
|cluster_id=chr4:135528489..135528533,- | |||
|description=CAGE_peak_1_at_Lypla2_5end | |||
|id=chr4:135528489..135528533,- | |||
|ontology_enrichment_celltype=CL:0000144!1.32e-20!121;CL:0000012!1.32e-20!121;CL:0002371!5.15e-20!118;CL:0002319!7.18e-19!43;CL:0000221!9.82e-19!44;CL:0000133!9.82e-19!44;CL:0000548!3.31e-18!115;CL:0000004!3.31e-18!115;CL:0000255!3.31e-18!115;CL:0000034!5.11e-17!97;CL:0000723!6.42e-17!91;CL:0000048!6.42e-17!91;CL:0000055!1.29e-15!50;CL:0002321!8.91e-14!70;CL:0000220!8.91e-14!70;CL:0000540!1.29e-13!33;CL:0000047!1.29e-13!33;CL:0000031!1.29e-13!33;CL:0000404!1.29e-13!33;CL:0000117!1.34e-13!23;CL:0000337!1.34e-13!23;CL:0000393!4.39e-11!39;CL:0000211!4.39e-11!39;CL:0000219!1.46e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,7.18e-19,43;CL:0000221,9.82e-19,44;CL:0000133,9.82e-19,44;CL:0000034,5.11e-17,97;CL:0000723,6.42e-17,91;CL:0000048,6.42e-17,91;CL:0002321,8.91e-14,70;CL:0000540,1.29e-13,33;CL:0000047,1.29e-13,33;CL:0000031,1.29e-13,33;CL:0000404,1.29e-13,33;CL:0000117,1.34e-13,23;CL:0000337,1.34e-13,23;CL:0000393,4.39e-11,39;CL:0000211,4.39e-11,39;CL:0000219,1.46e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.51e-20!75;UBERON:0001016!1.51e-20!75;UBERON:0001017!3.05e-19!73;UBERON:0005743!3.05e-19!73;UBERON:0004121!2.43e-13!102;UBERON:0000924!2.43e-13!102;UBERON:0006601!2.43e-13!102;UBERON:0001049!9.38e-13!52;UBERON:0005068!9.38e-13!52;UBERON:0006241!9.38e-13!52;UBERON:0007135!9.38e-13!52;UBERON:0000955!3.20e-11!50;UBERON:0006238!3.20e-11!50;UBERON:0002616!3.96e-11!49;UBERON:0002020!9.47e-11!34;UBERON:0002780!1.50e-08!39;UBERON:0001890!1.50e-08!39;UBERON:0006240!1.50e-08!39;UBERON:0000033!1.80e-08!63;UBERON:0003080!2.21e-08!40;UBERON:0002791!3.43e-08!29;UBERON:0003528!3.43e-08!29;UBERON:0001893!3.43e-08!29;UBERON:0002346!1.97e-07!71;UBERON:0003075!1.97e-07!71;UBERON:0007284!1.97e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.51e-20,75;UBERON:0001017,3.05e-19,73;UBERON:0004121,8.93e-16,95;UBERON:0000924,8.93e-16,95;UBERON:0006601,8.93e-16,95;UBERON:0000073,1.03e-13,54;UBERON:0001049,9.38e-13,52;UBERON:0005068,9.38e-13,52;UBERON:0006241,9.38e-13,52;UBERON:0007135,9.38e-13,52;UBERON:0002020,9.47e-11,34;UBERON:0000955,5.14e-10,47;UBERON:0006238,5.14e-10,47;UBERON:0002616,6.35e-10,46;UBERON:0002346,1.55e-09,64;UBERON:0003075,1.55e-09,64;UBERON:0007284,1.55e-09,64;UBERON:0010371,8.91e-09,73;UBERON:0002780,1.50e-08,39;UBERON:0001890,1.50e-08,39;UBERON:0006240,1.50e-08,39;UBERON:0003080,2.21e-08,40;UBERON:0003528,3.43e-08,29;UBERON:0002791,3.43e-08,29;UBERON:0001893,3.43e-08,29 | |||
|phase1_expression=17.2960754873177,24.4282785347553,11.8299802241279,10.2837831844322,8.5152274090879,17.9630820945722,12.6150825921584,20.1432384568859,13.7972947708633,8.66038747391376,16.0944890131975,11.0085579413564,16.4352700733957,13.1130603628496,11.3257319017325,9.51633756732182,6.99561878128147,14.8267217718372,13.5743289269681,10.1853516431527,14.9676190665883,13.3049874609186,21.1571829202538,11.6794468639187,15.1410125504332,25.2662064210609,19.8150518233174,22.1935369666466,18.0522248483555,19.6583501212746,21.2861290229093,12.065582795733,23.9875267157982,15.8481681015439,16.4645423258227,17.9533416987172,11.637653306955,49.805264057692,32.0347491254758,34.0290433582969,52.9408339227913,35.5183652178392,54.8626698925204,4.90997590104751,6.9950082541465,8.07605709511399,25.0365230191373,26.5990690784145,25.7032833799332,15.748821825017,19.3181261843,20.125359011096,18.456086666351,14.5072428402269,17.8129713545506,16.7218633423366,14.6132054368766,19.0798674142654,39.6540263284812,33.3264316941381,33.5930643858275,24.3968063089775,20.4537803105562,72.4419272411526,49.4433181283487,68.9165711497717,48.8348180145,74.9225695377031,28.9294018340653,21.1959323180754,20.6118462124354,32.2785612376298,34.8972294703549,23.0282702524114,32.2999237331457,24.8189072384706,16.5173821499083,30.2618991261895,26.5739302533301,31.6527090552465,51.6905186353615,41.152156273984,40.7607178542016,25.8870800614573,25.9757021220577,24.1595440088408,30.8946547334053,29.2647129945722,51.2666328865656,34.3850598485874,8.98579914975201,11.185510400758,17.6792546764015,31.3027851149934,18.8435161059824,12.9927797258227,15.870219474888,10.7371103224176,9.61208217030615,15.1936017039446,13.3801248787846,6.41632387071589,0,0,20.5666488960653,21.0288688344332,12.6381111253696,13.1311461676919,11.3932668804756,10.984718290797,14.2257967948231,7.61163695780353,7.37969591219387,10.2491395575783,9.7598626922635,11.0586600370114,18.0452326446093,9.39895819979426,11.4999371753484,9.38247729694973,11.0420759230197,9.21262980956922,14.9113408974498,12.5895742714965,18.2218634927706,14.8165092020983,14.4976300652164,20.9965955847693,16.5191295194984,12.2828324311955,12.3525162761029,19.7277332817197,16.1656617778817,15.0872119824895,19.7398642331582,14.6017136760982,12.8317598451399,9.45492976636707,12.1306924048164,11.1534183619831,11.7108398666433,15.4034409970427,11.343914177737,10.2479276128286,10.7497668659098,6.40568601424249,14.2426621330788,6.46758426847539,17.0298714416945,10.7790465695657,12.6684809398043,20.1660073833369,4.44875598760957,10.447564995665,8.64284972913362,11.9420560091096,9.12877143507205,13.1247432628505,20.1756084570871,11.1847917169171,8.44293815931946,7.92273070428465,7.33908680314152,8.26409773339096,10.7986979021165,7.20855228726264,10.1943892531855,10.3921154706781,12.0128690436841,9.85004784474571,9.07970666913584,9.64919917007193,8.56245449635098,5.2340503316545,18.0849355765149,16.3618333683062,14.8688452342709,10.5780226665418,11.9441420299731,6.50262681209228,10.4382643670896,11.2942773789072,13.1203045868473,11.223311940641,13.2868137232463,8.72904460037258,12.3154252312132,11.5394753783867,12.8676297498619,12.5834717211591,17.7233200897249,13.7407478545513,17.6391147886366,10.6251116727048,7.88954149711563,8.96065842519383,8.14600446104028,11.5022744620122,11.4458132194906,11.0707610984702,7.22194148070324,10.2419646055094,13.6368208460088,7.84171996865642,8.64859578498093,8.7696223830093,7.50582449137461,11.3353265083636,8.91190481234969,9.78166867332756,11.3494658742525,12.6298250066517,5.75072826109418,14.8856379067401,14.6657706363843,13.1341016532498,13.4548060141434,16.8855232477179,11.2699446001629,12.6959245886225,13.0371981153621,9.33597971763535,8.44884893838608,10.7204004762762,8.56957107189649,14.2447562936193,4.72905432318573,7.30833475840957,13.0752910299139,9.99566219766002,14.1601685130034,12.8737662137545,19.6028669121054,17.4049818821987,11.3105782794378,15.1765210467603,16.8578119487182,15.8235776899474,5.24591825205361,8.83648245215305,13.566853434899,11.7131623288992,12.0637102730367,15.7719406648684,19.6062833192507,19.2492040936406,12.9539424535966,15.7818163272108,16.602086673754,14.7807805554031,9.9358059645788,15.313641915384,12.8680697889325,9.89820737835213,5.30980553359851,9.22566417388929,13.302236506449,7.35559811048003,15.0603965369194,13.8345816574767,15.247269296925,8.36127577798263,10.3384239731569,11.3773232856894,13.7044191147498,12.3762651897824,16.6815406819356,9.90336017172206,15.0056073187995,16.9326257674958,14.1872186913819,10.167022603318,13.8221177305782,19.1812917942198,12.9069439435041,12.2862601101016,10.1443063105282,10.5527201882547,7.75029248140347,9.52944213864862,14.0859365923701,15.1009627765456,14.8655226681224,17.9862542950194,10.423123728669,12.1768252098301,5.55583582109135,4.89757988212197,5.19438065339896,6.86334519619568,14.9581018394593,14.1350966846895,15.4783970660955,10.5013767981662,10.2809197913869,12.6058069618646,9.720480673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| |||
|short_description=p1@Lypla2 | |||
}} |
Revision as of 23:24, 4 August 2015
Short description: | p1@Lypla2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lypla2_5end |
Coexpression cluster: | MCL_coexpression_mm9:247 |
Association with transcript: | 0bp_to_ENSMUST00000145350, ENSMUST00000150978, NM_011942, uc008vhn.1_5end |
EntrezGene: | 26394 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 7.18e-19 | 43 |
ectodermal cell | 9.82e-19 | 44 |
neurectodermal cell | 9.82e-19 | 44 |
stem cell | 5.11e-17 | 97 |
somatic stem cell | 6.42e-17 | 91 |
multi fate stem cell | 6.42e-17 | 91 |
embryonic cell | 8.91e-14 | 70 |
neuron | 1.29e-13 | 33 |
neuronal stem cell | 1.29e-13 | 33 |
neuroblast | 1.29e-13 | 33 |
electrically signaling cell | 1.29e-13 | 33 |
CNS neuron (sensu Vertebrata) | 1.34e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.34e-13 | 23 |
electrically responsive cell | 4.39e-11 | 39 |
electrically active cell | 4.39e-11 | 39 |
motile cell | 1.46e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.51e-20 | 75 |
central nervous system | 3.05e-19 | 73 |
ectoderm-derived structure | 8.93e-16 | 95 |
ectoderm | 8.93e-16 | 95 |
presumptive ectoderm | 8.93e-16 | 95 |
regional part of nervous system | 1.03e-13 | 54 |
neural tube | 9.38e-13 | 52 |
neural rod | 9.38e-13 | 52 |
future spinal cord | 9.38e-13 | 52 |
neural keel | 9.38e-13 | 52 |
gray matter | 9.47e-11 | 34 |
brain | 5.14e-10 | 47 |
future brain | 5.14e-10 | 47 |
regional part of brain | 6.35e-10 | 46 |
neurectoderm | 1.55e-09 | 64 |
neural plate | 1.55e-09 | 64 |
presumptive neural plate | 1.55e-09 | 64 |
ecto-epithelium | 8.91e-09 | 73 |
regional part of forebrain | 1.50e-08 | 39 |
forebrain | 1.50e-08 | 39 |
future forebrain | 1.50e-08 | 39 |
anterior neural tube | 2.21e-08 | 40 |
brain grey matter | 3.43e-08 | 29 |
regional part of telencephalon | 3.43e-08 | 29 |
telencephalon | 3.43e-08 | 29 |