FFCP PHASE1:Hg19::chr8:38758640..38758708,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=59339 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14336 | |||
|TSSclassifier=strong | |||
|UniProt=Q9HB19,E5RHB5,A8K727 | |||
|association_with_transcript=-44bp_to_ENST00000420274,ENST00000521746,NM_021623,uc003xmi.3,uc011lce.1_5end | |||
|description=CAGE_peak_2_at_PLEKHA2_5end | |||
|id=chr8:38758640..38758708,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.65e-29!115;UBERON:0003075!2.17e-16!86;UBERON:0007284!2.17e-16!86;UBERON:0002346!8.03e-15!90;UBERON:0001049!2.71e-13!57;UBERON:0005068!2.71e-13!57;UBERON:0006241!2.71e-13!57;UBERON:0007135!2.71e-13!57;UBERON:0003056!2.93e-13!61;UBERON:0000955!3.72e-13!69;UBERON:0006238!3.72e-13!69;UBERON:0002616!3.81e-13!59;UBERON:0000153!1.49e-11!129;UBERON:0007811!1.49e-11!129;UBERON:0005743!1.65e-11!86;UBERON:0003080!2.87e-11!42;UBERON:0000033!4.34e-11!123;UBERON:0002780!5.99e-11!41;UBERON:0001890!5.99e-11!41;UBERON:0006240!5.99e-11!41;UBERON:0000073!2.00e-10!94;UBERON:0001016!2.00e-10!94;UBERON:0001017!2.66e-10!82;UBERON:0001893!1.35e-09!34;UBERON:0002020!2.41e-09!34;UBERON:0003528!2.41e-09!34;UBERON:0002791!3.05e-09!33;UBERON:0001869!5.63e-09!32;UBERON:0004121!1.94e-08!169;UBERON:0000924!8.52e-08!173;UBERON:0006601!8.52e-08!173;UBERON:0002619!2.55e-07!22;UBERON:0000062!2.68e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;7.42e-09;34!UBERON:0002780;1.30e-08;41!UBERON:0001890;1.30e-08;41!UBERON:0002791;1.80e-08;32!UBERON:0001869;2.06e-08;32!UBERON:0003528;2.29e-08;34!UBERON:0002020;2.29e-08;34!UBERON:0007023;1.08e-07;114!UBERON:0002619;1.51e-07;22!UBERON:0000073;2.87e-07;53!UBERON:0002616;2.87e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.02e-28,114;UBERON:0003075,1.26e-15,82;UBERON:0007284,1.26e-15,82;UBERON:0002346,4.23e-14,86;UBERON:0003056,3.06e-13,61;UBERON:0001049,6.20e-13,56;UBERON:0005068,6.20e-13,56;UBERON:0006241,6.20e-13,56;UBERON:0007135,6.20e-13,56;UBERON:0000955,7.04e-13,68;UBERON:0006238,7.04e-13,68;UBERON:0000073,6.17e-12,53;UBERON:0002616,6.17e-12,53;UBERON:0002780,5.39e-11,41;UBERON:0001890,5.39e-11,41;UBERON:0003080,5.39e-11,41;UBERON:0006240,5.39e-11,41;UBERON:0001017,3.96e-10,81;UBERON:0010371,4.75e-10,104;UBERON:0001893,1.24e-09,34;UBERON:0003528,2.22e-09,34;UBERON:0002020,2.22e-09,34;UBERON:0001016,3.40e-09,89;UBERON:0002791,4.83e-09,32;UBERON:0001869,5.20e-09,32;UBERON:0010314,4.73e-08,132;UBERON:0004121,9.30e-08,171;UBERON:0000924,9.30e-08,171;UBERON:0006601,9.30e-08,171;UBERON:0002619,2.41e-07,22;UBERON:0011216,5.79e-07,223 | |||
|phase1_expression=0.726713517082227,1.92690471501885,1.12763523276777,0,4.46961094427288,2.61701557230111,0,1.26343974685366,1.04474251279935,3.93174298402414,2.09340350391728,2.83973783769224,6.06664049925443,5.44571953024205,9.27912652038164,1.34465029290355,2.41077811209591,0.730310090387373,0,3.20114750999649,5.71201935483908,8.77673220138646,2.86235987131057,1.77936752594749,2.13422487311165,3.51501666440576,3.03772180964799,3.93553906568396,4.32700704533794,2.68680578668049,2.47705797305722,0.919421224478927,0.30120591877825,2.21852406100073,5.11283523829991,0.995184627411951,1.76160263600908,1.10799081706375,2.4065333696417,2.38711957787437,6.04571780447796,5.18229865630367,5.92423805558629,3.34415949192999,3.40088349319928,3.39617685662943,3.48643555358527,4.52284676824008,5.57471467611186,1.43846196161075,2.30544635876191,1.41889337933151,3.44745680736619,3.22742341791913,5.41705946377367,3.76484679085209,3.82068610080984,1.34834090667051,2.14258724659632,3.53021929783703,4.47535988059329,3.62836430205388,2.19410023383795,0.426224750532694,2.90209238628584,5.10646702222026,1.86846674698672,2.26123798731069,3.12889751052121,1.52032191293582,4.23779651843358,4.05105399586321,1.58231193720442,2.74631872205524,2.76385589954557,1.67726916406701,1.46027220490444,1.50176892841506,2.57160938715328,3.13514018115373,3.9783335439818,3.47061892152804,15.839662001519,4.36910889009705,0.889509253863555,3.41384178053206,7.20712776664822,3.4485146397269,3.96626923670917,7.63243003628291,1.1384259382189,1.76171156811282,2.6759125968766,1.32171328579026,3.36305137788922,1.31692042387539,1.180258620683,1.96505381374582,1.23360899399706,0.501559486172034,0.977766799900771,0.946895611469467,3.89653456815823,1.11410456885174,0.883817722424512,1.10766947291811,1.35401931882508,1.5370958367081,1.04047478047903,1.80881695064044,1.38175008892924,0.869409257205157,0.593146252648242,0.802622484269139,0,2.03956816855619,0.766440987203842,1.37450978193052,0.253019692019503,0.637130828648193,1.30216690771284,0.950452044448374,1.20460095262218,1.91979916731628,1.24930726552346,0,2.46338399076314,2.41928091869679,2.13952156626806,1.73789284659359,2.43806866313962,2.01210257911091,4.73091478821062,2.1686349143074,2.50668955317945,2.17269778441236,0,2.91980922181582,3.49778823507051,5.32150553910154,4.0404001418838,4.32230949142452,3.27865759463288,3.70784442784429,5.51730569212962,5.57215159357655,4.12169677608482,4.29283123749616,4.0039643754609,4.08603251462521,0.596287222100115,1.72046919021225,0.694281003215189,0,0.419499436209906,0,0,0,0,0,0.402829317109147,0,0,0,0.81014194788176,0.446498641420399,0.22452937262617,0.563057402416611,0,0,0.183201743930407,3.9534125230819,3.87780264148325,2.61656431285521,2.48485975847659,1.2663051166458,0.794455084879313,0.286836620748814,0.354668382198357,1.68203280042692,2.1349799145941,1.72667283892012,3.42332138939743,1.48181739276657,1.47115712802113,4.8434376846378,4.60940739583999,3.28050004567315,0.936480230490962,1.1409436430889,0.896692083310806,2.70099346880659,3.39933183173076,1.96631129383148,2.65400422631361,1.84251475967652,3.61640234115179,2.37600571456411,1.97813543422845,3.64064544775211,2.87447256726495,1.5150250255866,1.62654075833553,2.21651292387346,3.95079858792754,0.612975591598039,1.05166641234618,0.680593098960126,0.89694817844431,2.56268866582281,1.69545520927649,1.80054657650641,2.78241828943785,3.60696756063881,1.8611685633159,2.02531598689519,1.94874010322397,3.5340728394176,3.22174645248048,1.45481451136931,1.77504796258307,2.82105875037393,1.69560592310488,0.193260853163297,1.63647672354501,2.58124135850103,1.46368447355514,0.530119073285941,2.78865462886844,1.14027160516907,1.26160425437814,0.36497735907583,1.56449532329816,1.28648187638577,1.38134921352481,2.3218396401599,4.33127689001751,3.785817601275,3.20310911148393,4.09718750801919,4.52205288202815,3.26819166138609,4.27087114399974,3.10112008768378,3.33576490713088,3.07797725557112,0,2.80483547606892,4.5273141246454,5.88034845542168,0,0.982827216677626,2.95394953340702,3.09024169590255,1.47586126251736,2.57351715447788,1.86575485194663,0,2.01057944823262,0.833296006426766,3.25808305310325,8.31947828223663,1.44331342025273,5.10093781890338,5.51820862908362,0.433099343283221,0.462985512576611,0.380508304469197,0.790204397959275,1.71697232418975,6.64785916435973,4.21207677250628,4.45893486866185,1.87467667973554,1.6798212819886,0.992425680696705,2.14940454486836,0.871901815541886,4.21720947081732,0.492663237895943,1.93706554829097,6.42717158176393,7.92659743793288,4.16600030307054,1.71444314588856,1.90994212779139,3.51652341630141,5.13217338068116,1.02827492703324,3.30377363628309,2.28661146104463,0.897048674762886,5.23152082599936,0.4400297149257,1.42198887333556,3.57656445851882,0.845302752556,2.92531928243358,3.12022310734098,5.14414748524284,4.25547396069835,2.66422179016099,4.14636181608628,4.34097284313154,4.11620168390384,0,4.6200953336531,1.58390374586686,3.01439377059586,4.35766729300147,3.69900067373611,6.08118903205952,2.51128545716063,2.10833939483032,0.479249710983165,1.14861935834114,5.70547620162874,1.01346914667305,1.64381058040307,1.96967059563885,7.73387493555338,1.97030760201927,2.37190332345469,2.82354679815446,0.76228387266739,0,0,1.34013012267479,1.27587750330633,11.2351053592077,2.99161459204025,13.6757119433892,6.74803204455269,6.5022167737758,6.23909554509392,2.49565033836969,1.60586089917446,1.10391690523754,4.33423235473039,8.42649079237613,13.6444502433591,6.2083842775503,5.31380478828349,6.82165923604302,1.65078867489357,6.06983588134496,5.14715135716284,3.3082884179662,3.45142721309787,1.81436848265855,1.5156378572313,4.99306318531491,3.62868351995616,0.496215615637554,1.38115775959256,0.841980283299221,1.66580894032411,2.04682899626681,1.28683136914886,2.96836132889982,1.69630663182921,0,1.8067974323038,0.519254429183621,1.85936605535935,1.0877350463246,2.40607764363942,2.4861867012692,1.60740227430449,4.00600569614778,3.40923478894503,2.70719767744447,1.84836809050595,1.56869953835371,1.46139224653261,1.47772280450026,0,0.170093705276516,0.863663664408557,0,3.79325012561394,6.02027728625824,2.80363900349542,1.66215201785745,2.68649705666614,0,0.261435451024901,5.38545262744417,5.576248976895,3.57916234130733,2.88514832613622,3.11336180382368,1.81520899825294,1.14853107599234,1.30012049207304,1.6068392984416,2.80345083047154,1.84858340537573,2.76306614507033,1.51620229732984,3.75970857038958,4.35050081742686,2.38634556765083,3.02708921198907,2.14870389969272,2.11409074101617,0.765676274967505,4.2486267959331,4.18360994367557,4.40737285562896,2.7881490806424,0.616067160352178,0,3.47973196830029,1.29726953372744,2.43312307461385,3.34942532423701,4.11293252134344,3.0500831027812,2.81487570442467,1.28381696410176,2.54562598340749,0.78494864019923,2.51821440616641,3.29444435683266,4.83030849617314,1.61745985258653,1.58510321173008,1.68503382495592,2.43816869544795,0.731140468893853,0,3.41249778519964,2.54529777516683,2.26016233240486,1.10273068709225,0,0.438450885253763,6.36653087693356,6.55894752046633,2.43492452355245,1.8589409885985,2.53526042279017,3.01163839628508,4.12645972255109,1.426684205925,1.06428319221179,2.9555068941673,1.97576935775941,2.27683904259429,6.29882496440969,1.92444225451024,2.68120910214315,2.17781969722645,3.67160823029439,3.01353760869861,1.68471475667626,3.54744122829341,1.60806380144872,2.53723804616085,6.88173486428138,3.98753031021914,4.04994018278241,3.70226045777575,3.24236655596359,5.40031437238115,3.17250070517708,0.534120355637366,0,2.69544237579135,6.13150477914872,2.16403819464667,2.48996451719449,2.71024663638998,4.98948428582042,2.10655907145603,2.75175657541048,0.973865820823666,1.40398589056729,1.82587743226554,1.09675927041116,2.50634477090067,2.37008488922245,2.08764497634809,1.00899853595524,4.25846237690326,1.71752672377882,2.15068535015921,2.23676107892416,4.0043794010858,3.12620952643264,2.22724939116194,2.46174797895425,1.35227839237992,2.66457574398256,1.4098700508785,5.80135675265481,4.10222901961303,0.970884173996107,1.33732061132974,0.568272293612826,8.59480145055684,8.31501106331388,11.0577852755724,2.98244294329889,8.44016498463076,1.22439575525196,0.824019371133798,0.422250816255987,6.17668763578316,5.8019622261541,1.76352923497993,1.43176155503017,2.46169610922139,1.55519793830904,2.96565558786179,3.22238114416096,2.55786185113436,8.68061969605016,4.7896618469388,3.33410970433911,6.78532922266653,6.12269447868218,1.99613798001194,1.30213880542617,1.04951999995435,5.07499702804355,1.93448862085349,1.5255219017566,1.89110145414349,2.06846023944879,5.54048765428183,2.08349993919951,6.20018970069687,6.39161124714662,3.05163472634166,0.884634079449797,1.47773809476774,7.89787429754301,2.06983080686081,2.37020365273626,7.15637404085313,1.48124672601102,1.61394733071642,0.987334088507493,0.869178975376065,6.38002319463839,3.48070854927077,5.33034776018635,1.02193298195737,2.66866435871542,3.15802195610297,2.48155226678899,2.35275041181287,2.85296697858933,1.3282761290693,1.90723894776454,4.64195741961659,2.12202650606892,1.27217764290547,4.54416143458391,11.9431431729421,7.60735054728717,4.27721101453538,0.593042257361244,3.08909847366257,1.46190729307638,4.31367251076333,1.60515529459758,3.98249557733077,3.46664099509765,2.15231080825299,0.971121518136371,9.47002566838537,7.25944296291983,1.53036380815245,4.29668741473718,0.150323419414493,0.829505531177977,1.99396161812156,1.323967823502,3.13932918407225,1.19472429772959,0,0,2.2562765983567,3.13575671726008,1.56706571844725,4.89234671077684,5.67553907156335,3.87025325156341,6.13950263523959,3.61308011034121,5.14041787388623,0.176512253383001,5.87549926029384,1.78154502040776,0.794858446811959,5.00155288051442,1.95551382734803,2.80555870880368,4.90941887900511,0.19980960958213,0.432271251462318,0.80175617316141,1.54435498075768,1.29649318189335,1.11827282008889,4.71388069233591,6.65930609760709,5.85775939349066,3.16194474672598,10.1132706465532,3.00210144354895,5.47621515567972,2.55493176133945,2.57859264851974,2.36598618851383,8.37847203816763,10.3122190805258,2.87149209830726,6.19004901546872,10.3014251552777,14.9524876486055,15.7881160343807,2.16179930125442,0,1.02418136999391,0.741742725430498,0.404421263125109,1.47641222272123,2.28617996577618,7.15706720828373,5.5843396505746,0.321506296930038,1.2378549293751,0.83088067605837,7.19916452964801,3.86900977278975,6.07495566580247,1.34173875039706,3.15222829196793,3.46200281690987,1.05600336519407,0.35857467866569,2.49489756515279,9.29103924285377,7.28301167401975,0.25426853765475,3.80099721227599,0,2.28611152076586,1.19730191562487,2.21649806023215,5.28202867534807,2.60617810496289,0.879313402068495,1.32506888912221,5.55916712354667,3.04134984008187,2.39521573038061,0,3.41719720216623,5.03053776318931,2.89967338743037,4.96166021811951,5.92834895693833,1.70509637733254,0.638341257770182,2.72008901684737,3.2589686222951,6.43325711203269,3.60659893780785,7.53859662001125,4.43034089983493,5.97928698019619,6.00916467391199,2.29363678276028,6.76667214374799,6.52012230884526,0.138348634936231,1.8747061194316,1.97143852804142,3.71104933608458,0.941063278792687,0.936669811613763,0.579684114443301,1.64180283175561,2.10341978862502,0.554805861502613,2.65164207385125,3.27038272278348,0.889811221596536,0.686520205190771,0.302461847526478,1.08806040407946,0.295710299979268,1.11507737014592,0,1.39736661188633,1.65882483136342,1.86089200190596,3.65221543268214,3.45592500693602,2.28483127301277,1.22061219961398,2.18218391043071,2.36303225493475,2.32016879939247,1.19428766609585,2.80019435264208,1.71697852591396,1.34699795506368,2.52369796457302,8.09003287710674,3.85994864474866,1.82696004375648,1.81364740409818,4.63044948647668,3.67105056759701,4.65630986811867,5.5584260488975,4.60496504115285,0.883445729729405,3.47245268887647,4.56144589763296,2.81865670446741,0.690860683462397,2.12701969324168,7.05118024373827,3.11776494143022,3.98594520940089,2.12635012532597,1.96565909307848,4.91545817507439,3.38099397373803,0.59996218756479,1.38699248602383,3.09986963389468,9.08025525706937,0,1.53867458491389,2.48830904013189,1.02315497042921,2.15649622793364,2.51625506969434,0,0.33946505990805,0.425149840203366,1.48722917110803,4.46915934378595,2.86203915588077,2.12926711503384,4.80342448971282,3.87943538059752,3.062454773532,6.29446405945303,5.6678630530234,6.2257205032289,5.33302547025963,0.504143392443436,6.15499546931539,5.32869630585109,4.28308260777463,3.04257927353179,2.94924308369351,1.10057159113007,3.46576998451015,1.52552838186867,0,4.97290555290687,7.29540184987795,2.82387096184928,1.56302802246618,2.09525355585138,0.49131575253029,1.18284868973636,5.40300676947157,6.24862478891078,7.85409826704499,8.11722370482007,1.09394961803644,2.19303106742873,6.45074531906083,4.39678110899052,2.8107734080711,1.07140367175657,5.04425583328236,8.49751845931284,6.82986574053893,3.81420191699347,3.45701962667338,3.25827217931095,4.62194184242456,5.39336743215362,1.65471377237555,0.778619813244484,7.2998576350978,8.0128950857161,4.20408244970683,2.73947616152849,0.215927591218621,2.38875843943525,9.50638037549529,1.73814972905999,0.23248285073625,16.516535868745,4.00855682365126,2.27937780579341,3.92652497316085,4.14755797088455,2.15113679410139,2.01164401241961,2.2155485237381,8.46774100381858,0.9164274741762,1.24082554265728,3.82215575590973,1.11855431797792,1.76670420507437,0.365753774946808,3.23714418593947,1.7452677165562,4.6392577253528,7.77137588894623,2.33939463462106,7.75908023129336,3.56760272332706,3.04954421505192,0.219881033490858,1.50962843566674,5.78806185809585,1.96703604453562,0.940634592723046,10.0510811919101,0.942706188406504,7.45972175036792,9.50548481046675,2.9585900930838,2.37897960562944,2.53756578545605,3.54518383854674,3.39799930144758,2.14264726326789,2.11736923029415,0.401206833445841,7.30336388246517,1.83491713361816,5.73358332605805,0.473314686579554,6.66316603870964,1.30905207102113,2.645134202577,2.23197010900051,0.924351257262837,0.865253124247578,0.252332849670158,0.327796715891087,2.15387451719443,0.305966489225945,0.534434810531121,0.551369397209069,0.250707539292375,6.28963195211387,4.55539021265503,3.31667775783512,7.34374270619456,5.33084954752452,6.66580408098473,2.32520075409622,2.48298857183432,1.23345048838675,6.173774352982,3.84022659020617,1.95945073107265,2.73786640868225,3.7717149688169,2.51027718874367,5.98788641782824,0.814032686109745,2.66818364694289,1.9307228228694,1.70667884002515,7.03922827210363,5.25638209986326,5.69654649642034,9.98635161278269,3.8242020782295,2.8851164307291 | |||
|short_description=p2@PLEKHA2 | |||
}} |
Revision as of 21:44, 22 January 2014
Short description: | p2@PLEKHA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PLEKHA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -44bp_to_ENST00000420274, ENST00000521746, NM_021623, uc003xmi.3, uc011lce.1_5end |
EntrezGene: | PLEKHA2 |
HGNC: | 14336 |
UniProt: | Q9HB19E5RHB5A8K727 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.02e-28 | 114 |
neural plate | 1.26e-15 | 82 |
presumptive neural plate | 1.26e-15 | 82 |
neurectoderm | 4.23e-14 | 86 |
pre-chordal neural plate | 3.06e-13 | 61 |
neural tube | 6.20e-13 | 56 |
neural rod | 6.20e-13 | 56 |
future spinal cord | 6.20e-13 | 56 |
neural keel | 6.20e-13 | 56 |
brain | 7.04e-13 | 68 |
future brain | 7.04e-13 | 68 |
regional part of nervous system | 6.17e-12 | 53 |
regional part of brain | 6.17e-12 | 53 |
regional part of forebrain | 5.39e-11 | 41 |
forebrain | 5.39e-11 | 41 |
anterior neural tube | 5.39e-11 | 41 |
future forebrain | 5.39e-11 | 41 |
central nervous system | 3.96e-10 | 81 |
ecto-epithelium | 4.75e-10 | 104 |
telencephalon | 1.24e-09 | 34 |
brain grey matter | 2.22e-09 | 34 |
gray matter | 2.22e-09 | 34 |
nervous system | 3.40e-09 | 89 |
regional part of telencephalon | 4.83e-09 | 32 |
cerebral hemisphere | 5.20e-09 | 32 |
structure with developmental contribution from neural crest | 4.73e-08 | 132 |
ectoderm-derived structure | 9.30e-08 | 171 |
ectoderm | 9.30e-08 | 171 |
presumptive ectoderm | 9.30e-08 | 171 |
regional part of cerebral cortex | 2.41e-07 | 22 |
organ system subdivision | 5.79e-07 | 223 |