FFCP PHASE1:Mm9::chr9:41387933..41387975,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1851|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:41387933..41387975,+|id=chr9:41387933..41387975,+|ontology_enrichment_celltype=CL:0000393!3.18e-18!39;CL:0000211!3.18e-18!39;CL:0000055!1.07e-17!50;CL:0000221!8.78e-16!44;CL:0000133!8.78e-16!44;CL:0000540!3.82e-15!33;CL:0000047!3.82e-15!33;CL:0000031!3.82e-15!33;CL:0000404!3.82e-15!33;CL:0002319!4.25e-15!43;CL:0000117!2.23e-11!23;CL:0000337!2.23e-11!23;CL:0002321!3.60e-11!70;CL:0000220!3.60e-11!70|ontology_enrichment_celltype_v019_2=CL:0000393,1.31e-19,39;CL:0000211,1.31e-19,39;CL:0000221,2.10e-16,44;CL:0000133,2.10e-16,44;CL:0000540,2.84e-16,33;CL:0000047,2.84e-16,33;CL:0000031,2.84e-16,33;CL:0000404,2.84e-16,33;CL:0002319,1.14e-15,43;CL:0002321,1.14e-13,70;CL:0000117,3.41e-12,23;CL:0000337,3.41e-12,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.34e-22!75;UBERON:0001016!5.34e-22!75;UBERON:0001017!2.47e-21!73;UBERON:0005743!2.47e-21!73;UBERON:0004121!1.26e-17!102;UBERON:0000924!1.26e-17!102;UBERON:0006601!1.26e-17!102;UBERON:0000033!3.08e-15!63;UBERON:0000955!1.04e-14!50;UBERON:0006238!1.04e-14!50;UBERON:0001049!1.26e-14!52;UBERON:0005068!1.26e-14!52;UBERON:0006241!1.26e-14!52;UBERON:0007135!1.26e-14!52;UBERON:0002616!1.35e-14!49;UBERON:0002346!1.32e-13!71;UBERON:0003075!1.32e-13!71;UBERON:0007284!1.32e-13!71;UBERON:0000153!7.69e-13!94;UBERON:0003056!1.39e-11!49;UBERON:0002020!1.54e-11!34;UBERON:0003080!2.13e-11!40;UBERON:0002780!6.68e-11!39;UBERON:0001890!6.68e-11!39;UBERON:0006240!6.68e-11!39;UBERON:0002791!1.55e-10!29;UBERON:0003528!1.55e-10!29;UBERON:0001893!1.55e-10!29;UBERON:0007811!5.91e-10!86;UBERON:0000956!2.29e-07!21;UBERON:0001869!2.29e-07!21;UBERON:0000203!2.29e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.93e-23,75;UBERON:0001017,4.63e-22,73;UBERON:0004121,9.70e-19,95;UBERON:0000924,9.70e-19,95;UBERON:0006601,9.70e-19,95;UBERON:0000073,1.45e-16,54;UBERON:0002346,1.89e-16,64;UBERON:0003075,1.89e-16,64;UBERON:0007284,1.89e-16,64;UBERON:0001049,2.37e-15,52;UBERON:0005068,2.37e-15,52;UBERON:0006241,2.37e-15,52;UBERON:0007135,2.37e-15,52;UBERON:0010371,1.05e-14,73;UBERON:0000955,7.64e-14,47;UBERON:0006238,7.64e-14,47;UBERON:0002616,1.02e-13,46;UBERON:0010314,1.69e-13,92;UBERON:0002020,2.29e-12,34;UBERON:0003056,7.03e-12,49;UBERON:0003080,7.27e-12,40;UBERON:0002780,2.48e-11,39;UBERON:0001890,2.48e-11,39;UBERON:0006240,2.48e-11,39;UBERON:0003528,2.78e-11,29;UBERON:0002791,2.78e-11,29;UBERON:0001893,2.78e-11,29;UBERON:0000956,7.53e-08,21;UBERON:0001869,7.53e-08,21;UBERON:0000203,7.53e-08,21|phase1_expression=12.0111635328595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21112554392781,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.42073771675444,7.70464677268311,7.34187008646726,7.04152209913235,3.48840250208714,2.63623419281366,3.11087838518853,2.65974201088189,1.43752564364972,0,0,0,9.26133969729409,6.01720223871389,4.64104883049698,11.9366711907163,16.9277113367051,6.33831403506179,4.06613438482959,3.55717918444456,0.449949858640699,1.97773272513395,0,0.599200221036809,0.768436610643109,13.1685807631767,10.5304631898719,8.83364837675805,3.42781181284564,5.52171352379034,7.7169203505421,10.8305382250607,7.35375029288017,13.2139057199266,7.2781782708557,4.30098293117482,6.85808696197008,5.12330804173494,7.8137005583514,6.42120897703176,5.06486349028512,5.04234217663473,1.76777151284201,3.98640706237488,4.28718725398191,3.63485727999283,4.08086424576642,1.15945795480671,0.860423876981386,0,0,0,0,0.842666520790511,10.7371103224176,11.6903702071291,11.6602059588412,15.7744630149882,5.13305909657271,7.64415719119937,7.11066703153331,7.79367747640371,11.4011939463794,7.58286667522175,0.34255163915718,1.29468941823586,0.29688427812965,1.73485326766136,0.913396434936424,0.230615497256059,1.20578112442098,1.17588707135705,0.502666365318702,0,1.44599356919912,0,2.26473589926373,0.441683036920787,0.969750506270444,1.86391761218122,2.34224637609238,2.51336048176146,0,0,0,0,7.33974133083631,7.32000964509802,3.26701315493447,3.99795936442236,2.55715457330331,5.40248915854856,6.00292673350703,2.95334155165917,1.36847667671102,1.26361379216837,0.631325567659422,12.3614420814569,4.36813998423599,3.60124259610698,1.9591626318643,1.83698547708585,1.40925092313335,1.49922759295566,1.81092359517311,13.3652155618362,23.6382600209774,15.6596500505914,5.47989331068937,8.89751197521913,3.48252166522167,4.52720700097476,5.7719937377363,0,0,0,1.65700618028402,3.98694301967864,2.52086886045421,2.60419209143731,1.37734962223183,1.23413690309903,2.09280550275367,2.14618721119695,0.583826711835847,1.15191894939436,1.31333971263276,0.56748166682099,0.584799949701329,1.09775057645525,0.805238512562231,2.94405927989778,3.49875682089567,0,0.264450566663544,6.18535926552179,5.10920678092965,2.96395161040815,0.80673409849337,0.889512175379481,0.570676878337677,0.474529061544512,0.329397909448022,1.75934646160189,0,0.77985634847648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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1851 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr9:41387933..41387975,+ | |||
|description=CAGE_peak_at_chr9:41387933..41387975,+ | |||
|id=chr9:41387933..41387975,+ | |||
|ontology_enrichment_celltype=CL:0000393!3.18e-18!39;CL:0000211!3.18e-18!39;CL:0000055!1.07e-17!50;CL:0000221!8.78e-16!44;CL:0000133!8.78e-16!44;CL:0000540!3.82e-15!33;CL:0000047!3.82e-15!33;CL:0000031!3.82e-15!33;CL:0000404!3.82e-15!33;CL:0002319!4.25e-15!43;CL:0000117!2.23e-11!23;CL:0000337!2.23e-11!23;CL:0002321!3.60e-11!70;CL:0000220!3.60e-11!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.31e-19,39;CL:0000211,1.31e-19,39;CL:0000221,2.10e-16,44;CL:0000133,2.10e-16,44;CL:0000540,2.84e-16,33;CL:0000047,2.84e-16,33;CL:0000031,2.84e-16,33;CL:0000404,2.84e-16,33;CL:0002319,1.14e-15,43;CL:0002321,1.14e-13,70;CL:0000117,3.41e-12,23;CL:0000337,3.41e-12,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.34e-22!75;UBERON:0001016!5.34e-22!75;UBERON:0001017!2.47e-21!73;UBERON:0005743!2.47e-21!73;UBERON:0004121!1.26e-17!102;UBERON:0000924!1.26e-17!102;UBERON:0006601!1.26e-17!102;UBERON:0000033!3.08e-15!63;UBERON:0000955!1.04e-14!50;UBERON:0006238!1.04e-14!50;UBERON:0001049!1.26e-14!52;UBERON:0005068!1.26e-14!52;UBERON:0006241!1.26e-14!52;UBERON:0007135!1.26e-14!52;UBERON:0002616!1.35e-14!49;UBERON:0002346!1.32e-13!71;UBERON:0003075!1.32e-13!71;UBERON:0007284!1.32e-13!71;UBERON:0000153!7.69e-13!94;UBERON:0003056!1.39e-11!49;UBERON:0002020!1.54e-11!34;UBERON:0003080!2.13e-11!40;UBERON:0002780!6.68e-11!39;UBERON:0001890!6.68e-11!39;UBERON:0006240!6.68e-11!39;UBERON:0002791!1.55e-10!29;UBERON:0003528!1.55e-10!29;UBERON:0001893!1.55e-10!29;UBERON:0007811!5.91e-10!86;UBERON:0000956!2.29e-07!21;UBERON:0001869!2.29e-07!21;UBERON:0000203!2.29e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.93e-23,75;UBERON:0001017,4.63e-22,73;UBERON:0004121,9.70e-19,95;UBERON:0000924,9.70e-19,95;UBERON:0006601,9.70e-19,95;UBERON:0000073,1.45e-16,54;UBERON:0002346,1.89e-16,64;UBERON:0003075,1.89e-16,64;UBERON:0007284,1.89e-16,64;UBERON:0001049,2.37e-15,52;UBERON:0005068,2.37e-15,52;UBERON:0006241,2.37e-15,52;UBERON:0007135,2.37e-15,52;UBERON:0010371,1.05e-14,73;UBERON:0000955,7.64e-14,47;UBERON:0006238,7.64e-14,47;UBERON:0002616,1.02e-13,46;UBERON:0010314,1.69e-13,92;UBERON:0002020,2.29e-12,34;UBERON:0003056,7.03e-12,49;UBERON:0003080,7.27e-12,40;UBERON:0002780,2.48e-11,39;UBERON:0001890,2.48e-11,39;UBERON:0006240,2.48e-11,39;UBERON:0003528,2.78e-11,29;UBERON:0002791,2.78e-11,29;UBERON:0001893,2.78e-11,29;UBERON:0000956,7.53e-08,21;UBERON:0001869,7.53e-08,21;UBERON:0000203,7.53e-08,21 | |||
|phase1_expression=12.0111635328595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21112554392781,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.42073771675444,7.70464677268311,7.34187008646726,7.04152209913235,3.48840250208714,2.63623419281366,3.11087838518853,2.65974201088189,1.43752564364972,0,0,0,9.26133969729409,6.01720223871389,4.64104883049698,11.9366711907163,16.9277113367051,6.33831403506179,4.06613438482959,3.55717918444456,0.449949858640699,1.97773272513395,0,0.599200221036809,0.768436610643109,13.1685807631767,10.5304631898719,8.83364837675805,3.42781181284564,5.52171352379034,7.7169203505421,10.8305382250607,7.35375029288017,13.2139057199266,7.2781782708557,4.30098293117482,6.85808696197008,5.12330804173494,7.8137005583514,6.42120897703176,5.06486349028512,5.04234217663473,1.76777151284201,3.98640706237488,4.28718725398191,3.63485727999283,4.08086424576642,1.15945795480671,0.860423876981386,0,0,0,0,0.842666520790511,10.7371103224176,11.6903702071291,11.6602059588412,15.7744630149882,5.13305909657271,7.64415719119937,7.11066703153331,7.79367747640371,11.4011939463794,7.58286667522175,0.34255163915718,1.29468941823586,0.29688427812965,1.73485326766136,0.913396434936424,0.230615497256059,1.20578112442098,1.17588707135705,0.502666365318702,0,1.44599356919912,0,2.26473589926373,0.441683036920787,0.969750506270444,1.86391761218122,2.34224637609238,2.51336048176146,0,0,0,0,7.33974133083631,7.32000964509802,3.26701315493447,3.99795936442236,2.55715457330331,5.40248915854856,6.00292673350703,2.95334155165917,1.36847667671102,1.26361379216837,0.631325567659422,12.3614420814569,4.36813998423599,3.60124259610698,1.9591626318643,1.83698547708585,1.40925092313335,1.49922759295566,1.81092359517311,13.3652155618362,23.6382600209774,15.6596500505914,5.47989331068937,8.89751197521913,3.48252166522167,4.52720700097476,5.7719937377363,0,0,0,1.65700618028402,3.98694301967864,2.52086886045421,2.60419209143731,1.37734962223183,1.23413690309903,2.09280550275367,2.14618721119695,0.583826711835847,1.15191894939436,1.31333971263276,0.56748166682099,0.584799949701329,1.09775057645525,0.805238512562231,2.94405927989778,3.49875682089567,0,0.264450566663544,6.18535926552179,5.10920678092965,2.96395161040815,0.80673409849337,0.889512175379481,0.570676878337677,0.474529061544512,0.329397909448022,1.75934646160189,0,0.779856348476481,0,0.432276099749388,0.597423819763102,1.13800740571849,1.48523066392647,0,2.03651327845314,1.35766741017338,0.841629838683823,0.189709611372772,0.147610147979602,0.156998727841375,0.123397163921801,0,0.667380422864376,0.982794975566015,0.224862112384854,0,0,0,0,0,0,0,0,0.936113019343682,0,0,0,1.10851914099963,4.16881105895066,0.977789858652155,2.37643120085263,0.938760993154008,0.670025029767263,0.952174563544055,0.195133647857799,0.472905432318573,0.664394068946325,0.318909537314974,0.81931657357869,0.863424909329478,1.3018415272336,0,0,0.983528546038072,0.275936746304732,6.90367536947505,6.91548950893999,1.96721934452011,0.504941854408746,3.47059041357882,3.90438744296638,5.38558494331997,5.25731355495614,5.79276552614225,4.81230102341015,6.8817819284732,6.13737301613755,3.55759000151871,2.89189184779626,0.99358059645788,1.78065603667255,1.46598263418218,1.64970122972535,0,2.42780636154981,0.302323556964751,0.565815239267694,0.590603785761546,1.22974059177571,1.29214146584111,1.09060118843252,0,0.632073515871632,0,0,1.36175842301515,7.56256594931503,2.06973894052407,3.21505552547388,1.95074257006501,1.60531935841864,1.64549020602121,0.913394847343798,0,0,0.441056796109924,0.8244312647074,2.26050197374268,2.0506394475573,0.835606408021955,0.492422699235184,0.874442509889552,4.82105785227325,0,2.68302928352189,2.77791791054568,0.188368457004691,0.27338845544205,0.457556346413045,0,0,0,0.954670618015114,6.48488786841327,1.82987520414164,3.02414954301044,2.50905955217362,2.40198820120795,0.944050424693745,0.909188012978695,1.04702376793612,0.259229946583586,0.621339313086926,0,2.0932316446157,2.81279433777066,0.777804753376191,1.42075805825504,2.02747350588934,1.40828686374905,0.781226309063701,0.629156066554265,0.724752362478018,0,0,4.05450430580328,2.67048488628551,2.98817892848929,1.43221356533985,1.58945083825012,0.240390899039938,1.18151621739662,1.00966449948148,0.533447646584999,0.403304740547362,0.682205165178267,0.384847366561318,0.701261413089414,0.453460767230423,0,0.0897138566094757,0.167884616364078,1.35232715822533,0.563047426353546,0.915758121336325,2.14368379079066,0,3.3885110557024,2.30162618253588,3.43737308063638,3.09335728218638,5.48066015816514,3.7769694869485,8.10027000278167,1.80128481289688,4.53142408984205,4.65984280576638,5.81209146471389,9.97562183502578,13.3172212488225,2.91728060481953,3.35381060204772,1.65459157605013,4.88942801163553,3.09052585858341,3.85103051510178,3.53776096469316,3.8021894983536,2.45214243801899,1.87283014939765,3.00918216302886,2.5845961030026,2.85776214769844,2.0859178670074,2.70072908649187,5.35711671044299,2.94397840268795,4.114431028624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| |||
|short_description=p@chr9:41387933..41387975,+ | |||
}} |
Latest revision as of 02:37, 5 August 2015
Short description: | p@chr9:41387933..41387975, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:41387933..41387975, + |
Coexpression cluster: | MCL_coexpression_mm9:1851 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.31e-19 | 39 |
electrically active cell | 1.31e-19 | 39 |
ectodermal cell | 2.10e-16 | 44 |
neurectodermal cell | 2.10e-16 | 44 |
neuron | 2.84e-16 | 33 |
neuronal stem cell | 2.84e-16 | 33 |
neuroblast | 2.84e-16 | 33 |
electrically signaling cell | 2.84e-16 | 33 |
neural cell | 1.14e-15 | 43 |
embryonic cell | 1.14e-13 | 70 |
CNS neuron (sensu Vertebrata) | 3.41e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.41e-12 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.93e-23 | 75 |
central nervous system | 4.63e-22 | 73 |
ectoderm-derived structure | 9.70e-19 | 95 |
ectoderm | 9.70e-19 | 95 |
presumptive ectoderm | 9.70e-19 | 95 |
regional part of nervous system | 1.45e-16 | 54 |
neurectoderm | 1.89e-16 | 64 |
neural plate | 1.89e-16 | 64 |
presumptive neural plate | 1.89e-16 | 64 |
neural tube | 2.37e-15 | 52 |
neural rod | 2.37e-15 | 52 |
future spinal cord | 2.37e-15 | 52 |
neural keel | 2.37e-15 | 52 |
ecto-epithelium | 1.05e-14 | 73 |
brain | 7.64e-14 | 47 |
future brain | 7.64e-14 | 47 |
regional part of brain | 1.02e-13 | 46 |
structure with developmental contribution from neural crest | 1.69e-13 | 92 |
gray matter | 2.29e-12 | 34 |
pre-chordal neural plate | 7.03e-12 | 49 |
anterior neural tube | 7.27e-12 | 40 |
regional part of forebrain | 2.48e-11 | 39 |
forebrain | 2.48e-11 | 39 |
future forebrain | 2.48e-11 | 39 |
brain grey matter | 2.78e-11 | 29 |
regional part of telencephalon | 2.78e-11 | 29 |
telencephalon | 2.78e-11 | 29 |
cerebral cortex | 7.53e-08 | 21 |
cerebral hemisphere | 7.53e-08 | 21 |
pallium | 7.53e-08 | 21 |