UBERON:0002028: Difference between revisions
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|located_in= | |located_in= | ||
|name=hindbrain | |name=hindbrain | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000955 | |part_of=UBERON:0000955 | ||
Latest revision as of 17:24, 12 September 2014
| Name: | hindbrain | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [Wikipedia:Rhombencephalon, ZFA:0000029, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: | "rhombencephalon" RELATED [] | ||
| Comments: | in MA, brainstem and hindbrain and part-of siblings under brain, consistent with FMA and NIF. See also notes for cerebellum. We weaken the relation in ABA to overlaps | ||
| Alt_id: | UBERON:FMA_67687-MA_0000195-MIAA_0000107-XAO_0000015-ZFA_0000029 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-EmbryonicBrain.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002616(regional part of brain),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| develops_from: | UBERON:0003076(posterior neural tube),UBERON:0007277(presumptive hindbrain) |
| part_of: | UBERON:0000955(brain) |
Children
| part of: | UBERON:0001895 (metencephalon),UBERON:0001896 (medulla oblongata),UBERON:0002037 (cerebellum),UBERON:0004733 (segmental subdivision of hindbrain),UBERON:0005290 (myelencephalon),UBERON:0006215 (rhombic lip),UBERON:0009662 (hindbrain nucleus),UBERON:0010092 (future metencephalon),UBERON:0010096 (future myelencephalon) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
... further results Mouse (Mus musculus)
- 10033-101E6 (pons, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002028 (hindbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.71e-110 | FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_478bbfa21a5d49ca5ca714f9b653910a | p@chr2:72381655..72381673, - |
| 1.71e-110 | FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_478bbfa21a5d49ca5ca714f9b653910a | p@chr2:72381655..72381673, - |
| 5.84e-89 | FFCP PHASE2:Hg19::chr11:20621148..20621166,+#_f8b25900e50d117fd9b58589b3eb80d6 | p1@SLC6A5 |
| 5.84e-89 | FFCP PHASE1:Hg19::chr11:20621148..20621166,+#_f8b25900e50d117fd9b58589b3eb80d6 | p1@SLC6A5 |
| 2.65e-84 | FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_4241139a4054a028f93164d0adfa24cd | p3@CRTAM |
| 2.65e-84 | FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_4241139a4054a028f93164d0adfa24cd | p3@CRTAM |
| 3.05e-84 | FFCP PHASE2:Hg19::chr9:135457981..135458003,+#_db8d02b3edff4009342e63333e8e2d35 | p1@BARHL1 |
| 3.05e-84 | FFCP PHASE1:Hg19::chr9:135457981..135458003,+#_db8d02b3edff4009342e63333e8e2d35 | p1@BARHL1 |
| 4.43e-82 | FFCP PHASE1:Hg19::chr6:152884391..152884402,-#_3268b04ca1bee777413dce455fa4d411 | p@chr6:152884391..152884402, - |
| 4.43e-82 | FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_3268b04ca1bee777413dce455fa4d411 | p@chr4:117873850..117873861, - |
| 4.43e-82 | FFCP PHASE2:Hg19::chr6:152884391..152884402,-#_3268b04ca1bee777413dce455fa4d411 | p@chr6:152884391..152884402, - |
| 4.43e-82 | FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_3268b04ca1bee777413dce455fa4d411 | p@chr4:117873850..117873861, - |
| 6.69e-74 | FFCP PHASE2:Hg19::chr6:152884406..152884453,-#_caf113662b6819c09b1ca4cc9816aceb | p@chr6:152884406..152884453, - |
| 6.69e-74 | FFCP PHASE1:Hg19::chr6:152884406..152884453,-#_caf113662b6819c09b1ca4cc9816aceb | p@chr6:152884406..152884453, - |
| 1.11e-73 | FFCP PHASE2:Hg19::chr13:100311142..100311153,+#_43a3cfbf296cb1e4bebb309206e7712e | p@chr13:100311142..100311153, + |
| 1.11e-73 | FFCP PHASE1:Hg19::chr13:100311142..100311153,+#_43a3cfbf296cb1e4bebb309206e7712e | p@chr13:100311142..100311153, + |
| 4.59e-73 | FFCP PHASE1:Hg19::chr10:130489605..130489614,-#_dd18b819a4e1600871b595bf954daeec | p@chr10:130489605..130489614, - |
| 4.59e-73 | FFCP PHASE2:Hg19::chr10:130489605..130489614,-#_dd18b819a4e1600871b595bf954daeec | p@chr10:130489605..130489614, - |
| 3.5e-70 | FFCP PHASE1:Hg19::chr9:73736442..73736451,-#_b73118162c9733ebe8622b98e163ac45 | p9@TRPM3 |
| 3.5e-70 | FFCP PHASE2:Hg19::chr9:73736442..73736451,-#_b73118162c9733ebe8622b98e163ac45 | p9@TRPM3 |
| 1.26e-68 | FFCP PHASE1:Hg19::chr11:43855489..43855503,-#_df472c743af46a8a51283a6ea6b126aa | p1@ENST00000524643 |
| 1.26e-68 | FFCP PHASE1:Hg19::chr5:161112715..161112736,+#_df472c743af46a8a51283a6ea6b126aa | p1@GABRA6 |
| 1.26e-68 | FFCP PHASE2:Hg19::chr11:43855489..43855503,-#_df472c743af46a8a51283a6ea6b126aa | p1@ENST00000524643 |
| 1.26e-68 | FFCP PHASE2:Hg19::chr5:161112715..161112736,+#_df472c743af46a8a51283a6ea6b126aa | p1@GABRA6 |
| 1.26e-68 | FFCP PHASE2:Hg19::chr3:147110022..147110050,-#_df472c743af46a8a51283a6ea6b126aa | p8@ZIC4 |
| 1.26e-68 | FFCP PHASE1:Hg19::chr3:147110022..147110050,-#_df472c743af46a8a51283a6ea6b126aa | p8@ZIC4 |
| 1.45e-68 | FFCP PHASE2:Hg19::chr6:72922590..72922605,+#_fd1b5464299bd9b90231ba6c02e4a93e | p5@RIMS1 |
| 1.45e-68 | FFCP PHASE1:Hg19::chr6:72922590..72922605,+#_fd1b5464299bd9b90231ba6c02e4a93e | p5@RIMS1 |
| 1.67e-68 | FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_a4938906cf8c764e791eb7eee10a1458 | p17@BDNF |
| 1.67e-68 | FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_a4938906cf8c764e791eb7eee10a1458 | p17@BDNF |
| 6.16e-67 | FFCP PHASE2:Hg19::chr19:29493486..29493497,+#_62cfb0554644f3da22502fa2fe6fdc4f | p2@LOC100505835 |
| 6.16e-67 | FFCP PHASE1:Hg19::chr19:29493486..29493497,+#_62cfb0554644f3da22502fa2fe6fdc4f | p2@LOC100505835 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr5:161112968..161112988,+#_86ae5f31b1717f7ea540967181fd5815 | p3@GABRA6 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr3:98519943..98519958,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr3:98519943..98519958, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr1:16366392..16366411,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr1:16366392..16366411, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:60049016..60049032,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr14:60049016..60049032, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr18:8783586..8783597,+#_86ae5f31b1717f7ea540967181fd5815 | p2@CCDC165 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr20:45061746..45061763,-#_86ae5f31b1717f7ea540967181fd5815 | p4@ELMO2 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:72922614..72922626,+#_86ae5f31b1717f7ea540967181fd5815 | p19@RIMS1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr5:161112968..161112988,+#_86ae5f31b1717f7ea540967181fd5815 | p3@GABRA6 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:72922728..72922737,+#_86ae5f31b1717f7ea540967181fd5815 | p29@RIMS1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr20:39790925..39790940,+#_86ae5f31b1717f7ea540967181fd5815 | p@chr20:39790925..39790940, + |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_86ae5f31b1717f7ea540967181fd5815 | p22@CA10 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:588423..588441,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr17:588423..588441, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr20:45061746..45061763,-#_86ae5f31b1717f7ea540967181fd5815 | p4@ELMO2 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr2:149835088..149835109,+#_86ae5f31b1717f7ea540967181fd5815 | p9@KIF5C |
| 5.11e-66 | FFCP PHASE1:Hg19::chr15:81489280..81489292,+#_86ae5f31b1717f7ea540967181fd5815 | p15@IL16 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:36720287..36720302,-#_86ae5f31b1717f7ea540967181fd5815 | p18@SRCIN1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:77582905..77582916,+#_86ae5f31b1717f7ea540967181fd5815 | p5@TMEM63C |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:52168958..52169000,+#_86ae5f31b1717f7ea540967181fd5815 | p27@FRMD6 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:60049016..60049032,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr14:60049016..60049032, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr11:122733033..122733052,+#_86ae5f31b1717f7ea540967181fd5815 | p4@CRTAM |
| 5.11e-66 | FFCP PHASE2:Hg19::chr5:161112654..161112669,+#_86ae5f31b1717f7ea540967181fd5815 | p2@GABRA6 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr5:161112654..161112669,+#_86ae5f31b1717f7ea540967181fd5815 | p2@GABRA6 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr1:16366392..16366411,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr1:16366392..16366411, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr2:149835088..149835109,+#_86ae5f31b1717f7ea540967181fd5815 | p9@KIF5C |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:36720287..36720302,-#_86ae5f31b1717f7ea540967181fd5815 | p18@SRCIN1 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr20:39790925..39790940,+#_86ae5f31b1717f7ea540967181fd5815 | p@chr20:39790925..39790940, + |
| 5.11e-66 | FFCP PHASE2:Hg19::chr3:98519943..98519958,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr3:98519943..98519958, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_86ae5f31b1717f7ea540967181fd5815 | p2@CU680380 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr18:8783586..8783597,+#_86ae5f31b1717f7ea540967181fd5815 | p2@CCDC165 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr17:72857611..72857619, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:127533959..127533972,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr6:127533959..127533972, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr17:72857611..72857619, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr3:147125238..147125275,+#_86ae5f31b1717f7ea540967181fd5815 | p@chr3:147125238..147125275, + |
| 5.11e-66 | FFCP PHASE1:Hg19::chr18:8783637..8783650,+#_86ae5f31b1717f7ea540967181fd5815 | p@chr18:8783637..8783650, + |
| 5.11e-66 | FFCP PHASE2:Hg19::chr11:122733033..122733052,+#_86ae5f31b1717f7ea540967181fd5815 | p4@CRTAM |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:77582905..77582916,+#_86ae5f31b1717f7ea540967181fd5815 | p5@TMEM63C |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:34073743..34073761,-#_86ae5f31b1717f7ea540967181fd5815 | p1@GRM4 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:72667462..72667471,+#_86ae5f31b1717f7ea540967181fd5815 | p11@RAB37 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr11:123448159..123448170,+#_86ae5f31b1717f7ea540967181fd5815 | p4@AB384137 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_86ae5f31b1717f7ea540967181fd5815 | p4@AB384137 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_86ae5f31b1717f7ea540967181fd5815 | p22@CA10 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:72922614..72922626,+#_86ae5f31b1717f7ea540967181fd5815 | p19@RIMS1 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:127533978..127533993,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr6:127533978..127533993, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_86ae5f31b1717f7ea540967181fd5815 | p29@RIMS1 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr3:147125238..147125275,+#_86ae5f31b1717f7ea540967181fd5815 | p@chr3:147125238..147125275, + |
| 5.11e-66 | FFCP PHASE1:Hg19::chr15:79724672..79724683,+#_86ae5f31b1717f7ea540967181fd5815 | p1@KIAA1024 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr17:588423..588441,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr17:588423..588441, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr15:81489280..81489292,+#_86ae5f31b1717f7ea540967181fd5815 | p15@IL16 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:60031159..60031181,-#_86ae5f31b1717f7ea540967181fd5815 | p1@ENST00000556936 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr18:8783637..8783650,+#_86ae5f31b1717f7ea540967181fd5815 | p@chr18:8783637..8783650, + |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:127533978..127533993,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr6:127533978..127533993, - |
| 5.11e-66 | FFCP PHASE2:Hg19::chr14:60031159..60031181,-#_86ae5f31b1717f7ea540967181fd5815 | p1@ENST00000556936 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_86ae5f31b1717f7ea540967181fd5815 | p1@KIAA1024 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr6:127533959..127533972,-#_86ae5f31b1717f7ea540967181fd5815 | p@chr6:127533959..127533972, - |
| 5.11e-66 | FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_86ae5f31b1717f7ea540967181fd5815 | p2@CU680380 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr14:52168958..52169000,+#_86ae5f31b1717f7ea540967181fd5815 | p27@FRMD6 |
| 5.11e-66 | FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_86ae5f31b1717f7ea540967181fd5815 | p11@RAB37 |
| 5.11e-66 | FFCP PHASE2:Hg19::chr6:34073743..34073761,-#_86ae5f31b1717f7ea540967181fd5815 | p1@GRM4 |
| 1.63e-65 | FFCP PHASE2:Hg19::chr10:62149532..62149539,-#_70ce0fdbd0b6bef9921be0d1bf3cd7d3 | p38@ANK3 |
| 1.63e-65 | FFCP PHASE1:Hg19::chr10:62149532..62149539,-#_70ce0fdbd0b6bef9921be0d1bf3cd7d3 | p38@ANK3 |
| 2.29e-65 | FFCP PHASE1:Hg19::chrX:106692537..106692551,+#_f9cb0ca4b99e09695ae0d64d7fdc9037 | p@chrX:106692537..106692551, + |
| 2.29e-65 | FFCP PHASE2:Hg19::chrX:106692537..106692551,+#_f9cb0ca4b99e09695ae0d64d7fdc9037 | p@chrX:106692537..106692551, + |
| 8.77e-62 | FFCP PHASE2:Hg19::chr7:153445213..153445251,+#_104065991d5d4f166b6e56d05d1bca0a | p@chr7:153445213..153445251, + |
| 8.77e-62 | FFCP PHASE1:Hg19::chr7:153445213..153445251,+#_104065991d5d4f166b6e56d05d1bca0a | p@chr7:153445213..153445251, + |
| 9.7e-62 | FFCP PHASE2:Hg19::chr9:8779377..8779397,-#_7c18808ad16c87f726ae6ad43ddf9918 | p@chr9:8779377..8779397, - |
| 9.7e-62 | FFCP PHASE1:Hg19::chr9:8779377..8779397,-#_7c18808ad16c87f726ae6ad43ddf9918 | p@chr9:8779377..8779397, - |
| 2.04e-59 | FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_9faeb273febbff39fd7f3e5720aadf1e | p1@TPH2 |
| 2.04e-59 | FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_9faeb273febbff39fd7f3e5720aadf1e | p1@TPH2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Posterior part of the brain consisting of the cerebellum and medulla oblongata.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The most posterior of the three principal regions of the brain, forming the rhombencephalon and all or most of the metencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: develops_from hindbrain neural tube (TAO:0007043)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
