FFCP PHASE2:Hg19::chr19:43709748..43709760,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:5672 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:9521 |TSSclass...") |
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| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=5672 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=9521 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=C9JWP2,B3KQL2,Q00888,Q6P520 | ||
|association_with_transcript=29bp_to_ENST00000451895,NM_002780,NM_213633,uc002ovy.2,uc002ovz.2,uc002owa.2,uc002owb.2_5end | |association_with_transcript=29bp_to_ENST00000451895,NM_002780,NM_213633,uc002ovy.2,uc002ovz.2,uc002owa.2,uc002owb.2_5end | ||
|cluster_id=chr19:43709748..43709760,- | |cluster_id=chr19:43709748..43709760,- | ||
Latest revision as of 10:38, 18 September 2015
| Short description: | p2@PSG4 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_PSG4_5end |
| Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
| Association with transcript: | 29bp_to_ENST00000451895, NM_002780, NM_213633, uc002ovy.2, uc002ovz.2, uc002owa.2, uc002owb.2_5end |
| EntrezGene: | PSG4 |
| HGNC: | 9521 |
| UniProt: | C9JWP2B3KQL2Q00888Q6P520 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@PSG4 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| skin fibroblast | 2.36e-14 | 23 |
| preadipocyte of the breast | 8.69e-13 | 3 |
| outer root sheath cell | 8.08e-10 | 2 |
| fibroblast | 1.40e-09 | 76 |
| adipocyte of breast | 6.31e-09 | 2 |
| receptor cell | 3.35e-07 | 6 |
| sensory epithelial cell | 3.35e-07 | 6 |
| olfactory epithelial cell | 3.35e-07 | 6 |
Showing 1 to 8 of 8 entries
| Ontology term | p-value | n |
|---|---|---|
| skin of body | 3.02e-13 | 41 |
| integument | 1.59e-11 | 46 |
| integumental system | 1.59e-11 | 46 |
| breast | 6.72e-10 | 10 |
| hair root sheath | 8.08e-10 | 2 |
| hair outer root sheath | 8.08e-10 | 2 |
| bulb of hair follicle | 8.08e-10 | 2 |
| chest | 5.60e-09 | 11 |
Showing 1 to 8 of 8 entries
| Ontology term | p-value | n |
|---|---|---|
| musculoskeletal system disease | 5.68e-09 | 5 |
| myotonic disease | 5.68e-09 | 5 |
| muscle tissue disease | 5.68e-09 | 5 |
| myopathy | 5.68e-09 | 5 |
| muscular disease | 5.68e-09 | 5 |
| myotonic dystrophy | 5.68e-09 | 5 |
Showing 1 to 6 of 6 entries
