UBERON:0005721: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005721
|name=pronephric mesoderm
|namespace=
|def=
|xref=AAO:0011090;;EFO:0003479;;TAO:0000067;;VHOG:0001239;;XAO:0000264;;ZFA:0000067
|is_a=UBERON:...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:23, 15 June 2012
| Name: | pronephric mesoderm | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"pronephric anlage" RELATED [XAO:0000264] "pronephric bulge" RELATED [XAO:0000264] "pronephric mesenchyme" RELATED [XAO:0000264] "pronephric primordium" RELATED [XAO:0000264] | ||
| Comments: | the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007297(presumptive pronephric mesoderm) |
| part_of: | UBERON:0003064(intermediate mesoderm) |
Children
| develops from: | UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51680551..51680555,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:51680551..51680555, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379107..21379136,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379107..21379136, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:56515486..56515496,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:56515486..56515496, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:28323634..28323657,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:28323634..28323657, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164434346..164434353,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:164434346..164434353, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:152302813..152302821,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Defb20 |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:75798132..75798152,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:75798132..75798152, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:25706249..25706254,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:25706249..25706254, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:114385720..114385732,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr12:114385720..114385732, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90155923..90155932,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:90155923..90155932, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:23308115..23308126,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:23308115..23308126, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:70761885..70761895,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:70761885..70761895, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26704579..26704582,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:26704579..26704582, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:100350777..100350782,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:100350777..100350782, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:103837894..103837900,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:103837894..103837900, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:120078716..120078763,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:120078716..120078763, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:75798157..75798162,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:75798157..75798162, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:116901540..116901549,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@uc007mmw.1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:130496372..130496393,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:130496372..130496393, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:34107562..34107572,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:34107562..34107572, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35657485..35657490,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Gm3428 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379550..31379559,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379550..31379559, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:148676919..148676930,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@9230104L09Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:75304900..75304907,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:75304900..75304907, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:52712765..52712772,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:52712765..52712772, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:35930667..35930691,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:35930667..35930691, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:89596972..89596981,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:89596972..89596981, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101958844..101958851,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101958844..101958851, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:25349488..25349492,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p6@Lcn12 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:28323634..28323657,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:28323634..28323657, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:105797824..105797838,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p13@Cyb561 |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:103276578..103276585,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:103276578..103276585, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:35715997..35716008,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p1@9230113P08Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:12571679..12571688,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:12571679..12571688, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26785438..26785446,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Acad8 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:25563187..25563205,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:25563187..25563205, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:39707572..39707583,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:39707572..39707583, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:54678902..54678911,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:54678902..54678911, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:103896102..103896116,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr12:103896102..103896116, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr19:24582739..24582748,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr19:24582739..24582748, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:53938008..53938022,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p11@P4ha2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:31507623..31507631,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Atp4a |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:106730107..106730125,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:106730107..106730125, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379845..31379855,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379845..31379855, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:43230846..43230884,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:43230846..43230884, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21380610..21380620,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21380610..21380620, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr3:146278590..146278595,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p10@Dnase2b |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21381141..21381155,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21381141..21381155, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:54678983..54678995,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:54678983..54678995, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:52542711..52542716,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@Rnase13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:168436322..168436326,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:168436322..168436326, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152290340..152290344,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@Defb23 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101959159..101959163,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101959159..101959163, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:75866210..75866235,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:75866210..75866235, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:151928014..151928021,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:151928014..151928021, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:123977104..123977120,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p1@ENSMUST00000139012, p1@uc008uqo.1 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:103837894..103837900,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:103837894..103837900, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51627586..51627595,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Rnase10 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21378296..21378303,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21378296..21378303, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90155966..90155989,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:90155966..90155989, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr18:46301295..46301302,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr18:46301295..46301302, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379065..21379072,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379065..21379072, - |
